Literature DB >> 24215478

Self-assembly and bilayer-micelle transition of fatty acids studied by replica-exchange constant pH molecular dynamics.

Brian H Morrow1, Peter H Koenig, Jana K Shen.   

Abstract

Recent interest in the development of surfactant-based nanodelivery systems targeting tumor sites has sparked our curiosity in understanding the detailed mechanism of the self-assembly and phase transitions of pH-sensitive surfactants. Toward this goal, we applied a state-of-the-art simulation technique, continuous constant pH molecular dynamics (CpHMD) with the hybrid-solvent scheme and pH-based replica-exchange protocol, to study the de novo self-assembly of 30 and 40 lauric acids, a simple model titratable surfactant. We observed the formation of a gel-state bilayer at low and intermediate pH and a spherical micelle at high pH, with the phase transition starting at 20-30% ionization and being completed at 50%. The degree of cooperativity for the transition increases from the 30-mer to the 40-mer. The calculated apparent or bulk pKa value is 7.0 for the 30-mer and 7.5 for the 40-mer. Congruent with experiment, these data demonstrate that CpHMD is capable of accurately modeling large conformational transitions of surfactant systems while allowing the simultaneous proton titration of constituent molecules. We suggest that CpHMD simulations may become a useful tool in aiding in the design and development of pH-sensitive nanocarriers for a variety of biomedical and technological applications.

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Year:  2013        PMID: 24215478      PMCID: PMC3946477          DOI: 10.1021/la403398n

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  30 in total

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Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

4.  Charge-leveling and proper treatment of long-range electrostatics in all-atom molecular dynamics at constant pH.

Authors:  Jason A Wallace; Jana K Shen
Journal:  J Chem Phys       Date:  2012-11-14       Impact factor: 3.488

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Authors:  Jana Khandogin; Charles L Brooks
Journal:  Biophys J       Date:  2005-04-29       Impact factor: 4.033

7.  Molecular dynamics simulations of ionic and nonionic surfactant micelles with a generalized Born implicit-solvent model.

Authors:  Yuhang Wang; Jason A Wallace; Peter H Koenig; Jana K Shen
Journal:  J Comput Chem       Date:  2011-05-04       Impact factor: 3.376

Review 8.  Why do cancers have high aerobic glycolysis?

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10.  Phase behavior and bilayer properties of fatty acids: hydrated 1:1 acid-soaps.

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  14 in total

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Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

2.  Predicting proton titration in cationic micelle and bilayer environments.

Authors:  Brian H Morrow; David M Eike; Bruce P Murch; Peter H Koenig; Jana K Shen
Journal:  J Chem Phys       Date:  2014-08-28       Impact factor: 3.488

3.  Effects of system net charge and electrostatic truncation on all-atom constant pH molecular dynamics.

Authors:  Wei Chen; Jana K Shen
Journal:  J Comput Chem       Date:  2014-08-21       Impact factor: 3.376

4.  Origin of pKa Shifts of Internal Lysine Residues in SNase Studied Via Equal-Molar VMMS Simulations in Explicit Water.

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5.  pH-Responsive Self-Assembly of Polysaccharide through a Rugged Energy Landscape.

Authors:  Brian H Morrow; Gregory F Payne; Jana Shen
Journal:  J Am Chem Soc       Date:  2015-09-30       Impact factor: 15.419

6.  SAMPL6: calculation of macroscopic pKa values from ab initio quantum mechanical free energies.

Authors:  Edithe Selwa; Ian M Kenney; Oliver Beckstein; Bogdan I Iorga
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7.  Dynamic Protonation Dramatically Affects the Membrane Permeability of Drug-like Molecules.

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Journal:  J Am Chem Soc       Date:  2019-08-16       Impact factor: 15.419

8.  Recent development and application of constant pH molecular dynamics.

Authors:  Wei Chen; Brian H Morrow; Chuanyin Shi; Jana K Shen
Journal:  Mol Simul       Date:  2014-01-01       Impact factor: 2.178

9.  Simulating Replica Exchange: Markov State Models, Proposal Schemes, and the Infinite Swapping Limit.

Authors:  Bin W Zhang; Wei Dai; Emilio Gallicchio; Peng He; Junchao Xia; Zhiqiang Tan; Ronald M Levy
Journal:  J Phys Chem B       Date:  2016-04-29       Impact factor: 2.991

10.  Mechanism of the pH-Controlled Self-Assembly of Nanofibers from Peptide Amphiphiles.

Authors:  Yoann Cote; Iris W Fu; Eric T Dobson; Joshua E Goldberger; Hung D Nguyen; Jana K Shen
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2014-07-04       Impact factor: 4.126

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