Xavier Rogé1, Xuegong Zhang. 1. MOE Key Laboratory of Bioinformatics, Bioinformatics Division and Center for Synthetic and Systems Biology, TNLIST/Department of Automation and School of Life Sciences, Tsinghua University, Beijing 100084, China.
Abstract
SUMMARY: With the advances of RNA sequencing technologies, scientists need new tools to analyze transcriptome data. We introduce RNAseqViewer, a new visualization tool dedicated to RNA-Seq data. The program offers innovative ways to represent transcriptome data for single or multiple samples. It is a handy tool for scientists who use RNA-Seq data to compare multiple transcriptomes, for example, to compare gene expression and alternative splicing of cancer samples or of different development stages. AVAILABILITY AND IMPLEMENTATION: RNAseqViewer is freely available for academic use at http://bioinfo.au.tsinghua.edu.cn/software/RNAseqViewer/ CONTACT: zhangxg@tsinghua.edu.cn SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
SUMMARY: With the advances of RNA sequencing technologies, scientists need new tools to analyze transcriptome data. We introduce RNAseqViewer, a new visualization tool dedicated to RNA-Seq data. The program offers innovative ways to represent transcriptome data for single or multiple samples. It is a handy tool for scientists who use RNA-Seq data to compare multiple transcriptomes, for example, to compare gene expression and alternative splicing of cancer samples or of different development stages. AVAILABILITY AND IMPLEMENTATION: RNAseqViewer is freely available for academic use at http://bioinfo.au.tsinghua.edu.cn/software/RNAseqViewer/ CONTACT: zhangxg@tsinghua.edu.cn SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Authors: Ana Conesa; Pedro Madrigal; Sonia Tarazona; David Gomez-Cabrero; Alejandra Cervera; Andrew McPherson; Michał Wojciech Szcześniak; Daniel J Gaffney; Laura L Elo; Xuegong Zhang; Ali Mortazavi Journal: Genome Biol Date: 2016-01-26 Impact factor: 13.583
Authors: Craig P Hersh; Ian M Adcock; Juan C Celedón; Michael H Cho; David C Christiani; Blanca E Himes; Naftali Kaminski; Rasika A Mathias; Deborah A Meyers; John Quackenbush; Susan Redline; Katrina A Steiling; Holly K Tabor; Martin D Tobin; Mark M Wurfel; Ivana V Yang; Gerard H Koppelman Journal: Ann Am Thorac Soc Date: 2019-01