Literature DB >> 24214536

Population genomic analysis reveals no evidence for GC-biased gene conversion in Drosophila melanogaster.

Matthew C Robinson1, Eric A Stone, Nadia D Singh.   

Abstract

Gene conversion is the nonreciprocal exchange of genetic material between homologous chromosomes. Multiple lines of evidence from a variety of taxa strongly suggest that gene conversion events are biased toward GC-bearing alleles. However, in Drosophila, the data have largely been indirect and unclear, with some studies supporting the predictions of a GC-biased gene conversion model and other data showing contradictory findings. Here, we test whether gene conversion events are GC-biased in Drosophila melanogaster using whole-genome polymorphism and divergence data. Our results provide no support for GC-biased gene conversion and thus suggest that this process is unlikely to significantly contribute to patterns of polymorphism and divergence in this system.

Entities:  

Keywords:  Drosophila melanogaster; GC-biased gene conversion; polymorphism and divergence data; whole genome

Mesh:

Substances:

Year:  2013        PMID: 24214536     DOI: 10.1093/molbev/mst220

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  15 in total

1.  Recent and Long-Term Selection Across Synonymous Sites in Drosophila ananassae.

Authors:  Jae Young Choi; Charles F Aquadro
Journal:  J Mol Evol       Date:  2016-08-01       Impact factor: 2.395

2.  Extreme recombination frequencies shape genome variation and evolution in the honeybee, Apis mellifera.

Authors:  Andreas Wallberg; Sylvain Glémin; Matthew T Webster
Journal:  PLoS Genet       Date:  2015-04-22       Impact factor: 5.917

3.  Low Genetic Quality Alters Key Dimensions of the Mutational Spectrum.

Authors:  Nathaniel P Sharp; Aneil F Agrawal
Journal:  PLoS Biol       Date:  2016-03-25       Impact factor: 8.029

4.  Evolutionary forces affecting synonymous variations in plant genomes.

Authors:  Yves Clément; Gautier Sarah; Yan Holtz; Felix Homa; Stéphanie Pointet; Sandy Contreras; Benoit Nabholz; François Sabot; Laure Sauné; Morgane Ardisson; Roberto Bacilieri; Guillaume Besnard; Angélique Berger; Céline Cardi; Fabien De Bellis; Olivier Fouet; Cyril Jourda; Bouchaib Khadari; Claire Lanaud; Thierry Leroy; David Pot; Christopher Sauvage; Nora Scarcelli; James Tregear; Yves Vigouroux; Nabila Yahiaoui; Manuel Ruiz; Sylvain Santoni; Jean-Pierre Labouisse; Jean-Louis Pham; Jacques David; Sylvain Glémin
Journal:  PLoS Genet       Date:  2017-05-22       Impact factor: 5.917

5.  Variation in the Intensity of Selection on Codon Bias over Time Causes Contrasting Patterns of Base Composition Evolution in Drosophila.

Authors:  Benjamin C Jackson; José L Campos; Penelope R Haddrill; Brian Charlesworth; Kai Zeng
Journal:  Genome Biol Evol       Date:  2017-01-01       Impact factor: 3.416

6.  Transcription-Associated Compositional Skews in Drosophila Genes.

Authors:  Juraj Bergman; Andrea J Betancourt; Claus Vogl
Journal:  Genome Biol Evol       Date:  2018-01-01       Impact factor: 4.065

7.  1000 human genomes carry widespread signatures of GC biased gene conversion.

Authors:  Rajib Dutta; Arnab Saha-Mandal; Xi Cheng; Shuhao Qiu; Jasmine Serpen; Larisa Fedorova; Alexei Fedorov
Journal:  BMC Genomics       Date:  2018-04-16       Impact factor: 3.969

8.  Pervasive Strong Selection at the Level of Codon Usage Bias in Drosophila melanogaster.

Authors:  Heather E Machado; David S Lawrie; Dmitri A Petrov
Journal:  Genetics       Date:  2019-12-23       Impact factor: 4.562

9.  Genomic correlates of recombination rate and its variability across eight recombination maps in the western honey bee (Apis mellifera L.).

Authors:  Caitlin R Ross; Dominick S DeFelice; Greg J Hunt; Kate E Ihle; Gro V Amdam; Olav Rueppell
Journal:  BMC Genomics       Date:  2015-02-21       Impact factor: 3.969

10.  Tetrad analysis in plants and fungi finds large differences in gene conversion rates but no GC bias.

Authors:  Haoxuan Liu; Ju Huang; Xiaoguang Sun; Jing Li; Yingwen Hu; Luyao Yu; Gianni Liti; Dacheng Tian; Laurence D Hurst; Sihai Yang
Journal:  Nat Ecol Evol       Date:  2017-11-20       Impact factor: 15.460

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