Literature DB >> 24212404

Systems biology of human atherosclerosis.

Joseph Shalhoub1, Markus B Sikkel, Kerry J Davies, Panagiotis A Vorkas, Elizabeth J Want, Alun H Davies.   

Abstract

Systems biology describes a holistic and integrative approach to understand physiology and pathology. The "omic" disciplines include genomics, transcriptomics, proteomics, and metabolic profiling (metabonomics and metabolomics). By adopting a stance, which is opposing (yet complimentary) to conventional research techniques, systems biology offers an overview by assessing the "net" biological effect imposed by a disease or nondisease state. There are a number of different organizational levels to be understood, from DNA to protein, metabolites, cells, organs and organisms, even beyond this to an organism's context. Systems biology relies on the existence of "nodes" and "edges." Nodes are the constituent part of the system being studied (eg, proteins in the proteome), while the edges are the way these constituents interact. In future, it will be increasingly important to collaborate, collating data from multiple studies to improve data sets, making them freely available and undertaking integrative analyses.

Entities:  

Keywords:  atherosclerosis; genomics; metabolomics; metabonomics; proteomics; systems biology; transcriptomics

Mesh:

Substances:

Year:  2013        PMID: 24212404     DOI: 10.1177/1538574413510628

Source DB:  PubMed          Journal:  Vasc Endovascular Surg        ISSN: 1538-5744            Impact factor:   1.089


  11 in total

1.  Glycosphingolipids promote pro-atherogenic pathways in the pathogenesis of hyperglycemia-induced accelerated atherosclerosis.

Authors:  Vi T Dang; Lexy H Zhong; Aric Huang; Arlinda Deng; Geoff H Werstuck
Journal:  Metabolomics       Date:  2018-07-03       Impact factor: 4.290

Review 2.  The role of endothelial mechanosensitive genes in atherosclerosis and omics approaches.

Authors:  Rachel D Simmons; Sandeep Kumar; Hanjoong Jo
Journal:  Arch Biochem Biophys       Date:  2015-12-11       Impact factor: 4.013

Review 3.  Omics-based approaches to understand mechanosensitive endothelial biology and atherosclerosis.

Authors:  Rachel D Simmons; Sandeep Kumar; Salim Raid Thabet; Sanjoli Sur; Hanjoong Jo
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2016-06-24

4.  Identification of "antigen-specific" neutrophils in atherosclerosis patients that compromise vascular endothelial barrier function.

Authors:  Haisheng Chen; Liying Wu; Kaiyuan Diao; Yixuan Sheng; Xiao Chen; Yannan Song; Qiaoruo Jin; Pingchang Yang; Jiangping Song
Journal:  Am J Transl Res       Date:  2020-10-15       Impact factor: 4.060

Review 5.  Biomarkers of coronary artery disease: the promise of the transcriptome.

Authors:  Marten Antoon Siemelink; Tanja Zeller
Journal:  Curr Cardiol Rep       Date:  2014-08       Impact factor: 2.931

6.  Comprehensive Plasma Metabolomic Analyses of Atherosclerotic Progression Reveal Alterations in Glycerophospholipid and Sphingolipid Metabolism in Apolipoprotein E-deficient Mice.

Authors:  Vi T Dang; Aric Huang; Lexy H Zhong; Yuanyuan Shi; Geoff H Werstuck
Journal:  Sci Rep       Date:  2016-10-10       Impact factor: 4.379

7.  Modified LDL Particles Activate Inflammatory Pathways in Monocyte-derived Macrophages: Transcriptome Analysis.

Authors:  Alexander N Orekhov; Yumiko Oishi; Nikita G Nikiforov; Andrey V Zhelankin; Larisa Dubrovsky; Igor A Sobenin; Alexander Kel; Daria Stelmashenko; Vsevolod J Makeev; Kathy Foxx; Xueting Jin; Howard S Kruth; Michael Bukrinsky
Journal:  Curr Pharm Des       Date:  2018       Impact factor: 3.116

8.  Identification of novel genes and pathways in carotid atheroma using integrated bioinformatic methods.

Authors:  Wenqing Nai; Diane Threapleton; Jingbo Lu; Kewei Zhang; Hongyuan Wu; You Fu; Yuanyuan Wang; Zejin Ou; Lanlan Shan; Yan Ding; Yanlin Yu; Meng Dai
Journal:  Sci Rep       Date:  2016-01-08       Impact factor: 4.379

9.  Targeted metabolomic approach in men with carotid plaque.

Authors:  Teresa Auguet; Gemma Aragonès; Marina Colom; Carmen Aguilar; Vicente Martín-Paredero; Núria Canela; Xavier Ruyra; Cristóbal Richart
Journal:  PLoS One       Date:  2018-07-16       Impact factor: 3.240

Review 10.  Conceptualization of Heterogeneity of Chronic Diseases and Atherosclerosis as a Pathway to Precision Medicine: Endophenotype, Endotype, and Residual Cardiovascular Risk.

Authors:  Vadim V Genkel; Igor I Shaposhnik
Journal:  Int J Chronic Dis       Date:  2020-02-12
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