| Literature DB >> 24209605 |
Hana Zelená, Jakub Mrázek, Tomáš Kuhn.
Abstract
We report molecular evidence of Tula hantavirus as an etiologic agent of pulmonary-renal syndrome in an immunocompromised patient. Acute hantavirus infection was confirmed by using serologic and molecular methods. Sequencing revealed Tula virus genome RNA in the patient's blood. This case shows that Tula virus can cause serious disease in humans.Entities:
Keywords: Tula virus; hantavirus; hantavirus pulmonary syndrome; hemorrhagic fever with renal syndrome; immunocompromised host; viruses
Mesh:
Substances:
Year: 2013 PMID: 24209605 PMCID: PMC3837639 DOI: 10.3201/eid1911.130421
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Results of hantavirus serologic testing, Ostrava, Czech Republic, October 2012 *
| Virus | Serum samples obtained on day | Positivity range (IP)† | |||
|---|---|---|---|---|---|
| 11 | 12 | 20 | 39 | ||
| Hantavirus IgG ELISA | 0.26 | 0.38 |
|
| >1.1 |
| Hantavirus IgM ELISA |
|
|
|
| >1.1 |
| Puumala virus IgG Immunoblot | ND | Negative | ND | ND | ND |
| Puumala virus IgM Immunoblot | ND |
| ND | ND | ND |
| Dobrava virus IgG Immunoblot | ND | Negative | ND | ND | ND |
| Dobrava virus IgM Immunoblot | ND | Negative | ND | ND | ND |
| Hantaan virus IgG Immunoblot | ND | Negative | ND | ND | ND |
| Hantaan virus IgM Immunoblot | ND | Negative | ND | ND | ND |
*Bold font indicates positive results. IP, positivity index; ND, not done.
†ELISA serology is considered positive when the index value (optical density divided by the cutoff value) is >1.1.
Primers used in the study, Ostrava, Czech Republic, October 2012
| Primer | Step | Target segment | Sequence (5′→ 3′) | Reference |
|---|---|---|---|---|
| HAN-L-F1 | 1st PCR | Large | ATGTAYGTBAGTGCWGATGC | ( |
| HAN-L-R1 | 1st PCR | Large | AACCADTCWGTYCCRTCATC | ( |
| HAN-L-F2 | 2nd PCR, sequencing | Large | TGCWGATGCHACIAARTGGTC | ( |
| HAN-L-R2 | 2nd PCR, sequencing | Large | GCRTCRTCWGARTGRTGDGCAA | ( |
| S1 | 1st PCR | Small | GGMCAGACAGCAGAYTGG | ( |
| S2 | 1st PCR | Small | AGCTCAGGATCCATRTCATC | ( |
| MaS4F | 2nd PCR, sequencing | Small | CATCACAGGSYTTGCACTTGCAAT | ( |
| MaS5C | 2nd PCR, sequencing | Small | TCCTGAGGCTGCAAGGTCAA | ( |
Figure 1Phylogenetic tree (neighbor-joining analysis with maximum composite likelihood method) of Tula virus on the basis of large segment partial sequences (nt 2957–3337), Ostrava, Czech Republic, October 2012 GenBank accesion numbers: Haantaan virus (NC_005222), Puumala virus (Z66548), Prospect Hill virus (EF646763), 09/1905/Magr (HQ728460), 08/712/Arv (HQ728453), 09/2155/Arv (HQ728456), 08/525/Marv (HQ728461), 152/Arv (HQ728459), 78/Marv (HQ728464), 20/Marv (HQ728462), 109/Arv (HQ728457), 127/Arv (HQ728458), 09/1026/Arv (HQ728455), Moravia/5302v (AJ005637), JiTr/Opava /12 (KC522413), Hodos/Ma99/99 (FJ495101), Sred ob Dravi/Ms51/97 (FJ495102), Griblje/Ma57/01 (FJ495099), Sestrze/Mag98/02 (FJ495100). Bootstrap values ≥70%, calculated from 1,000 replicates, are shown at the tree branches. Arrow indicates strain isolated in this study. The tree is drawn to scale. The scale bar indicates an evolutionary distance of 0.05 substitutions per position in the sequence.
Figure 2Phylogenetic tree (neighbor-joining analysis with maximum composite likelihood method) of Tula virus on the basis of small segment partial sequences (nt 428–758), Ostrava, Czech Republic, October 2012 GenBank accession numbers: Haantaan virus (NC_005218), Puumala virus (NC_005224), Prospect Hill virus (Z49098), Isla Vista virus (U19302), Karatal322 (AM945877), Taldykorgan343 (AM945879), Karatal340 (AM945878), Omsk23 (AF442621), Tula76 (Z30941), Tula53 (Z30942), Tula175 (Z30943), Lodz-1 (AF063892), Lodz-2 (AF063897), Cottbus/D63/98 (AF289821), Cottbus/D5/98 (AF289819), Cacak/Serbia (AF017659), Kosice/667 (Y13980), Kosice/144 (Y13979), Waldnaab/g20-s (AF164093), c109s (AF164094), Wels/O64 (U95309), Wels/O24 (U95302), JiTr/Opava /12 (KC494908), Moravia/02 (Z49915), Moravia/94 (Z48741), Moravia/86 (Z48573), Moravia/93 (Z48574), Koziky/47 (AJ223600), Koziky/76 (AJ223601), Korneuburg/K11 (U95305), Korneuburg/K26 (U95310), Malacky/370, Malacky/32. Bootstrap values ≥70%, calculated from 1,000 replicates, are shown at the tree branches. Arrow indicates strain isolated in this study. The tree is drawn to scale. The scale bar indicates an evolutionary distance of 0.02 substitutions per position in the sequence.