Literature DB >> 24205893

An autonomously replicating sequence for use in a wide range of budding yeasts.

Ivan Liachko1, Maitreya J Dunham.   

Abstract

The initiation of DNA replication at replication origins is essential for the duplication of genomes. In yeast, the autonomously replicating sequence (ARS) property of replication origins is necessary for the stable maintenance of episomal plasmids. However, because the sequence determinants of ARS function differ among yeast species, current ARS modules are limited for use to a subset of yeasts. Here, we describe a short ARS sequence that functions in at least 10 diverse species of budding yeast. These include, but are not limited to members of the Saccharomyces, Lachancea, Kluyveromyces, and Pichia (Komagataella) genera spanning over 500 million years of evolution. In addition to its wide species range, this ARS and an optimized derivative confer improved plasmid stability relative to other currently used ARS modules.
© 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Entities:  

Keywords:  Kluyveromyces; Pichia pastoris; Saccharomyces; autonomously replicating sequence; replication origin; yeast

Mesh:

Substances:

Year:  2013        PMID: 24205893      PMCID: PMC3959236          DOI: 10.1111/1567-1364.12123

Source DB:  PubMed          Journal:  FEMS Yeast Res        ISSN: 1567-1356            Impact factor:   2.796


  21 in total

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Journal:  Yeast       Date:  2005-10-15       Impact factor: 3.239

2.  Localization and sequence analysis of yeast origins of DNA replication.

Authors:  J R Broach; Y Y Li; J Feldman; M Jayaram; J Abraham; K A Nasmyth; J B Hicks
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1983

3.  An episomal expression vector for screening mutant gene libraries in Pichia pastoris.

Authors:  Charles C Lee; Tina G Williams; Dominic W S Wong; George H Robertson
Journal:  Plasmid       Date:  2005-01-20       Impact factor: 3.466

4.  A comprehensive genome-wide map of autonomously replicating sequences in a naive genome.

Authors:  Ivan Liachko; Anand Bhaskar; Chanmi Lee; Shau Chee Claire Chung; Bik-Kwoon Tye; Uri Keich
Journal:  PLoS Genet       Date:  2010-05-13       Impact factor: 5.917

5.  Replicative transformation of the filamentous fungus Ashbya gossypii with plasmids containing Saccharomyces cerevisiae ARS elements.

Authors:  M C Wright; P Philippsen
Journal:  Gene       Date:  1991-12-20       Impact factor: 3.688

6.  Genome evolution in yeasts.

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Journal:  Nature       Date:  2004-07-01       Impact factor: 49.962

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Authors:  J M Cregg; K J Barringer; A Y Hessler; K R Madden
Journal:  Mol Cell Biol       Date:  1985-12       Impact factor: 4.272

8.  New and Redesigned pRS Plasmid Shuttle Vectors for Genetic Manipulation of Saccharomycescerevisiae.

Authors:  Mark K Chee; Steven B Haase
Journal:  G3 (Bethesda)       Date:  2012-05-01       Impact factor: 3.154

9.  GC-rich DNA elements enable replication origin activity in the methylotrophic yeast Pichia pastoris.

Authors:  Ivan Liachko; Rachel A Youngblood; Kyle Tsui; Kerry L Bubb; Christine Queitsch; M K Raghuraman; Corey Nislow; Bonita J Brewer; Maitreya J Dunham
Journal:  PLoS Genet       Date:  2014-03-06       Impact factor: 5.917

10.  High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast.

Authors:  Ivan Liachko; Rachel A Youngblood; Uri Keich; Maitreya J Dunham
Journal:  Genome Res       Date:  2012-12-12       Impact factor: 9.043

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  23 in total

1.  Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system.

Authors:  Sara J Hanson; Kevin P Byrne; Kenneth H Wolfe
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

2.  A Stable, Autonomously Replicating Plasmid Vector Containing Pichia pastoris Centromeric DNA.

Authors:  Yasuyuki Nakamura; Teruyuki Nishi; Risa Noguchi; Yoichiro Ito; Toru Watanabe; Tozo Nishiyama; Shimpei Aikawa; Tomohisa Hasunuma; Jun Ishii; Yuji Okubo; Akihiko Kondo
Journal:  Appl Environ Microbiol       Date:  2018-07-17       Impact factor: 4.792

Review 3.  The revenge of Zygosaccharomyces yeasts in food biotechnology and applied microbiology.

Authors:  L Solieri
Journal:  World J Microbiol Biotechnol       Date:  2021-05-10       Impact factor: 3.312

4.  A series of conditional shuttle vectors for targeted genomic integration in budding yeast.

Authors:  Chia-Ching Chou; Michael T Patel; Marc R Gartenberg
Journal:  FEMS Yeast Res       Date:  2015-03-02       Impact factor: 2.796

Review 5.  Expanding the promoter toolbox for metabolic engineering of methylotrophic yeasts.

Authors:  Chunxiao Yan; Wei Yu; Lun Yao; Xiaoyu Guo; Yongjin J Zhou; Jiaoqi Gao
Journal:  Appl Microbiol Biotechnol       Date:  2022-05-11       Impact factor: 4.813

6.  Strains and Molecular Tools for Recombinant Protein Production in Pichia pastoris.

Authors:  Claudia Rinnofner; Michael Felber; Harald Pichler
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7.  Design of a novel switchable antibody display system in Pichia pastoris.

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Journal:  Appl Microbiol Biotechnol       Date:  2022-08-12       Impact factor: 5.560

8.  Establishment of a Cre-loxP System Based on a Leaky LAC4 Promoter and an Unstable panARS Element in Kluyveromyces marxianus.

Authors:  Haiyan Ren; Anqi Yin; Pingping Wu; Huanyu Zhou; Jungang Zhou; Yao Yu; Hong Lu
Journal:  Microorganisms       Date:  2022-06-17

9.  Accurate identification of centromere locations in yeast genomes using Hi-C.

Authors:  Nelle Varoquaux; Ivan Liachko; Ferhat Ay; Joshua N Burton; Jay Shendure; Maitreya J Dunham; Jean-Philippe Vert; William S Noble
Journal:  Nucleic Acids Res       Date:  2015-05-04       Impact factor: 16.971

10.  GC-rich DNA elements enable replication origin activity in the methylotrophic yeast Pichia pastoris.

Authors:  Ivan Liachko; Rachel A Youngblood; Kyle Tsui; Kerry L Bubb; Christine Queitsch; M K Raghuraman; Corey Nislow; Bonita J Brewer; Maitreya J Dunham
Journal:  PLoS Genet       Date:  2014-03-06       Impact factor: 5.917

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