Literature DB >> 24205870

Networked enzymatic logic gates with filtering: new theoretical modeling expressions and their experimental application.

Vladimir Privman1, Oleksandr Zavalov, Lenka Halámková, Fiona Moseley, Jan Halámek, Evgeny Katz.   

Abstract

We report the first study of a network of connected enzyme-catalyzed reactions, with added chemical and enzymatic processes that incorporate the recently developed biochemical filtering steps into the functioning of this biocatalytic cascade. New theoretical expressions are derived to allow simple, few-parameter modeling of network components concatenated in such cascades, both with and without filtering. The derived expressions are tested against experimental data obtained for the realized network's responses, measured optically, to variations of its input chemicals' concentrations with and without filtering processes. We also describe how the present modeling approach captures and explains several observations and features identified in earlier studies of enzymatic processes when they were considered as potential network components for multistep information/signal processing systems.

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Year:  2013        PMID: 24205870     DOI: 10.1021/jp408973g

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  3 in total

1.  Bridging the Two Worlds: A Universal Interface between Enzymatic and DNA Computing Systems.

Authors:  Shay Mailloux; Yulia V Gerasimova; Nataliia Guz; Dmitry M Kolpashchikov; Evgeny Katz
Journal:  Angew Chem Int Ed Engl       Date:  2015-04-09       Impact factor: 15.336

2.  Design of Flow Systems for Improved Networking and Reduced Noise in Biomolecular Signal Processing in Biocomputing and Biosensing Applications.

Authors:  Arjun Verma; Brian E Fratto; Vladimir Privman; Evgeny Katz
Journal:  Sensors (Basel)       Date:  2016-07-05       Impact factor: 3.576

3.  Advanced Chemical Computing Using Discrete Turing Patterns in Arrays of Coupled Cells.

Authors:  František Muzika; Lenka Schreiberová; Igor Schreiber
Journal:  Front Chem       Date:  2020-10-29       Impact factor: 5.221

  3 in total

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