Literature DB >> 24203343

Mespeus--a database of metal interactions with proteins.

Marjorie M Harding1, Kun-Yi Hsin.   

Abstract

Modeling and analogy are commonly used to identify the part that a metal may play in the structure or function of a new protein which has been recognized by structural genomics. Mespeus ( http://mespeus.bch.ed.ac.uk/MESPEUS_10/) lists metal protein interactions whose geometry has been experimentally determined and allows them to be visualized. This can contribute to the modeling process. The use of Mespeus is described with a series of examples.

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Year:  2014        PMID: 24203343     DOI: 10.1007/978-1-62703-691-7_23

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

1.  Time-lapse anomalous X-ray diffraction shows how Fe(2+) substrate ions move through ferritin protein nanocages to oxidoreductase sites.

Authors:  Cecilia Pozzi; Flavio Di Pisa; Daniela Lalli; Camilla Rosa; Elizabeth Theil; Paola Turano; Stefano Mangani
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-03-27

2.  Defining the metal specificity of a multifunctional biofilm adhesion protein.

Authors:  Catherine T Chaton; Andrew B Herr
Journal:  Protein Sci       Date:  2017-07-25       Impact factor: 6.725

Review 3.  Cooperativity, allostery and synergism in ligand binding to riboswitches.

Authors:  Alla Peselis; Ang Gao; Alexander Serganov
Journal:  Biochimie       Date:  2015-07-02       Impact factor: 4.079

4.  Perspectives and expectations in structural bioinformatics of metalloproteins.

Authors:  Sen Yao; Robert M Flight; Eric C Rouchka; Hunter N B Moseley
Journal:  Proteins       Date:  2017-03-15

5.  Mn(2+)-sensing mechanisms of yybP-ykoY orphan riboswitches.

Authors:  Ian R Price; Ahmed Gaballa; Fang Ding; John D Helmann; Ailong Ke
Journal:  Mol Cell       Date:  2015-03-19       Impact factor: 17.970

6.  Structural basis for the interaction of protein S1 with the Escherichia coli ribosome.

Authors:  Konstantin Byrgazov; Irina Grishkovskaya; Stefan Arenz; Nicolas Coudevylle; Hannes Temmel; Daniel N Wilson; Kristina Djinovic-Carugo; Isabella Moll
Journal:  Nucleic Acids Res       Date:  2014-12-15       Impact factor: 16.971

Review 7.  The solvent component of macromolecular crystals.

Authors:  Christian X Weichenberger; Pavel V Afonine; Katherine Kantardjieff; Bernhard Rupp
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-04-30

8.  A less-biased analysis of metalloproteins reveals novel zinc coordination geometries.

Authors:  Sen Yao; Robert M Flight; Eric C Rouchka; Hunter N B Moseley
Journal:  Proteins       Date:  2015-06-13

9.  Identification of functionally important conserved trans-membrane residues of bacterial PIB -type ATPases.

Authors:  Daniel Zhitnitsky; Oded Lewinson
Journal:  Mol Microbiol       Date:  2014-01-14       Impact factor: 3.501

10.  Structure-function analyses of human kallikrein-related peptidase 2 establish the 99-loop as master regulator of activity.

Authors:  Wolfgang Skala; Daniel T Utzschneider; Viktor Magdolen; Mekdes Debela; Shihui Guo; Charles S Craik; Hans Brandstetter; Peter Goettig
Journal:  J Biol Chem       Date:  2014-10-16       Impact factor: 5.157

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