Literature DB >> 24203342

Navigating the global protein-protein interaction landscape using iRefWeb.

Andrei L Turinsky1, Sabry Razick, Brian Turner, Ian M Donaldson, Shoshana J Wodak.   

Abstract

iRefWeb is a bioinformatics resource that offers access to a large collection of data on protein-protein interactions in over a thousand organisms. This collection is consolidated from 14 major public databases that curate the scientific literature. The collection is enhanced with a range of versatile data filters and search options that categorize various types of protein-protein interactions and protein complexes. Users of iRefWeb are able to retrieve all curated interactions for a given organism or those involving a given protein (or a list of proteins), narrow down their search results based on different supporting evidence, and assess the reliability of these interactions using various criteria. They may also examine all data and annotations related to any publication that described the interaction-detection experiments. iRefWeb is freely available to the research community worldwide at http://wodaklab.org/iRefWeb .

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Year:  2014        PMID: 24203342     DOI: 10.1007/978-1-62703-691-7_22

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

Review 1.  From gene networks to drugs: systems pharmacology approaches for AUD.

Authors:  Laura B Ferguson; R Adron Harris; Roy Dayne Mayfield
Journal:  Psychopharmacology (Berl)       Date:  2018-03-01       Impact factor: 4.530

2.  Integrative analysis of human protein, function and disease networks.

Authors:  Wei Liu; Aiping Wu; Matteo Pellegrini; Xiaofan Wang
Journal:  Sci Rep       Date:  2015-09-24       Impact factor: 4.379

Review 3.  Drug-Like Protein-Protein Interaction Modulators: Challenges and Opportunities for Drug Discovery and Chemical Biology.

Authors:  Bruno O Villoutreix; Melaine A Kuenemann; Jean-Luc Poyet; Heriberto Bruzzoni-Giovanelli; Céline Labbé; David Lagorce; Olivier Sperandio; Maria A Miteva
Journal:  Mol Inform       Date:  2014-06-02       Impact factor: 3.353

Review 4.  Fundamentals of protein interaction network mapping.

Authors:  Jamie Snider; Max Kotlyar; Punit Saraon; Zhong Yao; Igor Jurisica; Igor Stagljar
Journal:  Mol Syst Biol       Date:  2015-12-17       Impact factor: 11.429

5.  Integrated interactions database: tissue-specific view of the human and model organism interactomes.

Authors:  Max Kotlyar; Chiara Pastrello; Nicholas Sheahan; Igor Jurisica
Journal:  Nucleic Acids Res       Date:  2015-10-29       Impact factor: 16.971

6.  Computational analysis of multimorbidity between asthma, eczema and rhinitis.

Authors:  Daniel Aguilar; Mariona Pinart; Gerard H Koppelman; Yvan Saeys; Martijn C Nawijn; Dirkje S Postma; Mübeccel Akdis; Charles Auffray; Stéphane Ballereau; Marta Benet; Judith García-Aymerich; Juan Ramón González; Stefano Guerra; Thomas Keil; Manolis Kogevinas; Bart Lambrecht; Nathanael Lemonnier; Erik Melen; Jordi Sunyer; Rudolf Valenta; Sergi Valverde; Magnus Wickman; Jean Bousquet; Baldo Oliva; Josep M Antó
Journal:  PLoS One       Date:  2017-06-09       Impact factor: 3.240

7.  Identification of a multi-cancer gene expression biomarker for cancer clinical outcomes using a network-based algorithm.

Authors:  Emmanuel Martinez-Ledesma; Roeland G W Verhaak; Victor Treviño
Journal:  Sci Rep       Date:  2015-07-23       Impact factor: 4.379

8.  Differential protein network analysis of the immune cell lineage.

Authors:  Trevor Clancy; Eivind Hovig
Journal:  Biomed Res Int       Date:  2014-09-21       Impact factor: 3.411

9.  Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system.

Authors:  Mainak Guharoy; Pallab Bhowmick; Mohamed Sallam; Peter Tompa
Journal:  Nat Commun       Date:  2016-01-06       Impact factor: 14.919

10.  Profiling networks of distinct immune-cells in tumors.

Authors:  Trevor Clancy; Eivind Hovig
Journal:  BMC Bioinformatics       Date:  2016-07-04       Impact factor: 3.169

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