Literature DB >> 24198427

Intracellular dynamics of HIV infection.

Janka Petravic1, Paula Ellenberg, Ming-Liang Chan, Geza Paukovics, Redmond P Smyth, Johnson Mak, Miles P Davenport.   

Abstract

Early studies of HIV infection dynamics suggested that virus-producing HIV-infected cells had an average half-life of approximately 1 day. However, whether this average behavior is reflective of the dynamics of individual infected cells is unclear. Here, we use HIV-enhanced green fluorescent protein (EGFP) constructs and flow cytometry sorting to explore the dynamics of cell infection, viral protein production, and cell death in vitro. By following the numbers of productively infected cells expressing EGFP over time, we show that infected cell death slows down over time. Although infected cell death in vivo could be very different, our results suggest that the constant decay of cell numbers observed in vivo during antiretroviral treatment could reflect a balance of cell death and delayed viral protein production. We observe no correlation between viral protein production and death rate of productively infected cells, showing that viral protein production is not likely to be the sole determinant of the death of HIV-infected cells. Finally, we show that all observed features can be reproduced by a simple model in which infected cells have broad distributions of productive life spans, times to start viral protein production, and viral protein production rates. This broad spectrum of the level and timing of viral protein production provides new insights into the behavior and characteristics of HIV-infected cells.

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Year:  2013        PMID: 24198427      PMCID: PMC3911679          DOI: 10.1128/JVI.02038-13

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  31 in total

1.  Attenuation of green fluorescent protein half-life in mammalian cells.

Authors:  P Corish; C Tyler-Smith
Journal:  Protein Eng       Date:  1999-12

2.  The dependence of viral parameter estimates on the assumed viral life cycle: limitations of studies of viral load data.

Authors:  A L Lloyd
Journal:  Proc Biol Sci       Date:  2001-04-22       Impact factor: 5.349

3.  Mathematical analysis of delay differential equation models of HIV-1 infection.

Authors:  Patrick W Nelson; Alan S Perelson
Journal:  Math Biosci       Date:  2002 Jul-Aug       Impact factor: 2.144

Review 4.  The HIV-1 vaccine race.

Authors:  David D Ho; Yaoxing Huang
Journal:  Cell       Date:  2002-07-26       Impact factor: 41.582

5.  Optimizing within-host viral fitness: infected cell lifespan and virion production rate.

Authors:  Michael A Gilchrist; Daniel Coombs; A S Alan S Perelson
Journal:  J Theor Biol       Date:  2004-07-21       Impact factor: 2.691

6.  Sexual transmission and propagation of SIV and HIV in resting and activated CD4+ T cells.

Authors:  Z Zhang; T Schuler; M Zupancic; S Wietgrefe; K A Staskus; K A Reimann; T A Reinhart; M Rogan; W Cavert; C J Miller; R S Veazey; D Notermans; S Little; S A Danner; D D Richman; D Havlir; J Wong; H L Jordan; T W Schacker; P Racz; K Tenner-Racz; N L Letvin; S Wolinsky; A T Haase
Journal:  Science       Date:  1999-11-12       Impact factor: 47.728

7.  The site of HIV-1 integration in the human genome determines basal transcriptional activity and response to Tat transactivation.

Authors:  A Jordan; P Defechereux; E Verdin
Journal:  EMBO J       Date:  2001-04-02       Impact factor: 11.598

8.  Direct and quantitative single-cell analysis of human immunodeficiency virus type 1 reactivation from latency.

Authors:  Olaf Kutsch; Etty N Benveniste; George M Shaw; David N Levy
Journal:  J Virol       Date:  2002-09       Impact factor: 5.103

9.  Entry and transcription as key determinants of differences in CD4 T-cell permissiveness to human immunodeficiency virus type 1 infection.

Authors:  Angela Ciuffi; Gabriela Bleiber; Miguel Muñoz; Raquel Martinez; Corinne Loeuillet; Manuela Rehr; Marek Fischer; Huldrych F Günthard; Annette Oxenius; Pascal Meylan; Sebastian Bonhoeffer; Didier Trono; Amalio Telenti
Journal:  J Virol       Date:  2004-10       Impact factor: 5.103

10.  24 hours in the life of HIV-1 in a T cell line.

Authors:  Pejman Mohammadi; Sébastien Desfarges; István Bartha; Beda Joos; Nadine Zangger; Miguel Muñoz; Huldrych F Günthard; Niko Beerenwinkel; Amalio Telenti; Angela Ciuffi
Journal:  PLoS Pathog       Date:  2013-01-31       Impact factor: 6.823

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  9 in total

1.  Relationship between Measures of HIV Reactivation and Decline of the Latent Reservoir under Latency-Reversing Agents.

Authors:  Janka Petravic; Thomas A Rasmussen; Sharon R Lewin; Stephen J Kent; Miles P Davenport
Journal:  J Virol       Date:  2017-04-13       Impact factor: 5.103

2.  Kinetics of HIV-1 Latency Reversal Quantified on the Single-Cell Level Using a Novel Flow-Based Technique.

Authors:  G Martrus; A Niehrs; R Cornelis; A Rechtien; W García-Beltran; M Lütgehetmann; C Hoffmann; M Altfeld
Journal:  J Virol       Date:  2016-09-29       Impact factor: 5.103

Review 3.  Dynamic models of viral replication and latency.

Authors:  Pejman Mohammadi; Angela Ciuffi; Niko Beerenwinkel
Journal:  Curr Opin HIV AIDS       Date:  2015-03       Impact factor: 4.283

4.  Quantifying the Antiviral Effect of IFN on HIV-1 Replication in Cell Culture.

Authors:  Hiroki Ikeda; Ana Godinho-Santos; Sylvie Rato; Bénédicte Vanwalscappel; François Clavel; Kazuyuki Aihara; Shingo Iwami; Fabrizio Mammano
Journal:  Sci Rep       Date:  2015-06-29       Impact factor: 4.379

5.  A method to determine the duration of the eclipse phase for in vitro infection with a highly pathogenic SHIV strain.

Authors:  Yusuke Kakizoe; Shinji Nakaoka; Catherine A A Beauchemin; Satoru Morita; Hiromi Mori; Tatsuhiko Igarashi; Kazuyuki Aihara; Tomoyuki Miura; Shingo Iwami
Journal:  Sci Rep       Date:  2015-05-21       Impact factor: 4.379

6.  Simple mathematical models do not accurately predict early SIV dynamics.

Authors:  Cecilia Noecker; Krista Schaefer; Kelly Zaccheo; Yiding Yang; Judy Day; Vitaly V Ganusov
Journal:  Viruses       Date:  2015-03-13       Impact factor: 5.048

7.  Duration of SHIV production by infected cells is not exponentially distributed: Implications for estimates of infection parameters and antiviral efficacy.

Authors:  Catherine A A Beauchemin; Tomoyuki Miura; Shingo Iwami
Journal:  Sci Rep       Date:  2017-02-16       Impact factor: 4.379

8.  In-host modeling.

Authors:  Stanca M Ciupe; Jane M Heffernan
Journal:  Infect Dis Model       Date:  2017-04-29

9.  Expression Profiles of Ligands for Activating Natural Killer Cell Receptors on HIV Infected and Uninfected CD4⁺ T Cells.

Authors:  Alexandra Tremblay-McLean; Julie Bruneau; Bertrand Lebouché; Irene Lisovsky; Rujun Song; Nicole F Bernard
Journal:  Viruses       Date:  2017-10-12       Impact factor: 5.048

  9 in total

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