Literature DB >> 24196950

Proton-mediated conformational changes in an acid-sensing ion channel.

Swarna S Ramaswamy1, David M MacLean, Alemayehu A Gorfe, Vasanthi Jayaraman.   

Abstract

Acid-sensing ion channels are cation channels activated by external protons and play roles in nociception, synaptic transmission, and the physiopathology of ischemic stroke. Using luminescence resonance energy transfer (LRET), we show that upon proton binding, there is a conformational change that increases LRET efficiency between the probes at the thumb and finger subdomains in the extracellular domain of acid-sensing ion channels. Additionally, we show that this conformational change is lost upon mutating Asp-238, Glu-239, and Asp-260, which line the finger domains, to alanines. Electrophysiological studies showed that the single mutant D260A shifted the EC50 by 0.2 pH units, the double mutant D238A/E239A shifted the EC50 by 2.5 pH units, and the triple mutant D238A/E239A/D260A exhibited no response to protons despite surface expression. The LRET experiments on D238A/E239A/D260A showed no changes in LRET efficiency upon reduction in pH from 8 to 6. The LRET and electrophysiological studies thus suggest that the three carboxylates, two of which are involved in carboxyl/carboxylate interactions, are essential for proton-induced conformational changes in the extracellular domain, which in turn are necessary for receptor activation.

Entities:  

Keywords:  Acid-sensing Ion Channels (ASICs); Fluorescence Resonance Energy Transfer (FRET); Ligand-binding Protein; Ligand-gated Ion Channels; Receptor Activation; Receptor Desensitization; Receptor Structure-Function

Mesh:

Substances:

Year:  2013        PMID: 24196950      PMCID: PMC3861639          DOI: 10.1074/jbc.M113.478982

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  24 in total

1.  Two residues in the extracellular domain convert a nonfunctional ASIC1 into a proton-activated channel.

Authors:  Tianbo Li; Youshan Yang; Cecilia M Canessa
Journal:  Am J Physiol Cell Physiol       Date:  2010-04-28       Impact factor: 4.249

2.  Role of dimer interface in activation and desensitization in AMPA receptors.

Authors:  Jennifer Gonzalez; Mei Du; Kodeeswaran Parameshwaran; Vishnu Suppiramaniam; Vasanthi Jayaraman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

3.  Leu85 in the beta1-beta2 linker of ASIC1 slows activation and decreases the apparent proton affinity by stabilizing a closed conformation.

Authors:  Tianbo Li; Youshan Yang; Cecilia M Canessa
Journal:  J Biol Chem       Date:  2010-05-17       Impact factor: 5.157

4.  Subunit arrangement in N-methyl-D-aspartate (NMDA) receptors.

Authors:  Anu Rambhadran; Jennifer Gonzalez; Vasanthi Jayaraman
Journal:  J Biol Chem       Date:  2010-03-19       Impact factor: 5.157

Review 5.  Acid-sensing ion channels in sensory perception.

Authors:  Eric Lingueglia
Journal:  J Biol Chem       Date:  2007-04-12       Impact factor: 5.157

6.  Identification of protein domains that control proton and calcium sensitivity of ASIC1a.

Authors:  Thomas Sherwood; Ruthie Franke; Shannon Conneely; Jeffrey Joyner; Prakash Arumugan; Candice Askwith
Journal:  J Biol Chem       Date:  2009-08-04       Impact factor: 5.157

7.  Interaction of the aromatics Tyr-72/Trp-288 in the interface of the extracellular and transmembrane domains is essential for proton gating of acid-sensing ion channels.

Authors:  Tianbo Li; Youshan Yang; Cecilia M Canessa
Journal:  J Biol Chem       Date:  2008-12-11       Impact factor: 5.157

8.  Oxidant regulated inter-subunit disulfide bond formation between ASIC1a subunits.

Authors:  Xiang-ming Zha; Runping Wang; Dan M Collier; Peter M Snyder; John A Wemmie; Michael J Welsh
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-13       Impact factor: 11.205

9.  Structure of acid-sensing ion channel 1 at 1.9 A resolution and low pH.

Authors:  Jayasankar Jasti; Hiroyasu Furukawa; Eric B Gonzales; Eric Gouaux
Journal:  Nature       Date:  2007-09-20       Impact factor: 49.962

10.  LRET investigations of conformational changes in the ligand binding domain of a functional AMPA receptor.

Authors:  Jennifer Gonzalez; Anu Rambhadran; Mei Du; Vasanthi Jayaraman
Journal:  Biochemistry       Date:  2008-08-30       Impact factor: 3.162

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  10 in total

1.  Molecular dynamics and functional studies define a hot spot of crystal contacts essential for PcTx1 inhibition of acid-sensing ion channel 1a.

Authors:  Natalie J Saez; Evelyne Deplazes; Ben Cristofori-Armstrong; Irène R Chassagnon; Xiaozhen Lin; Mehdi Mobli; Alan E Mark; Lachlan D Rash; Glenn F King
Journal:  Br J Pharmacol       Date:  2015-09-22       Impact factor: 8.739

2.  Conformational dynamics and role of the acidic pocket in ASIC pH-dependent gating.

Authors:  Sabrina Vullo; Gaetano Bonifacio; Sophie Roy; Niklaus Johner; Simon Bernèche; Stephan Kellenberger
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-20       Impact factor: 11.205

3.  Deactivation kinetics of acid-sensing ion channel 1a are strongly pH-sensitive.

Authors:  David M MacLean; Vasanthi Jayaraman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

4.  The Thumb Domain Mediates Acid-sensing Ion Channel Desensitization.

Authors:  Aram J Krauson; Marcelo D Carattino
Journal:  J Biol Chem       Date:  2016-03-25       Impact factor: 5.157

5.  Mapping allosteric linkage to channel gating by extracellular domains in the human epithelial sodium channel.

Authors:  Mahmoud Shobair; Konstantin I Popov; Yan L Dang; Hong He; M Jackson Stutts; Nikolay V Dokholyan
Journal:  J Biol Chem       Date:  2018-01-22       Impact factor: 5.157

6.  Luminescence resonance energy transfer to study conformational changes in membrane proteins expressed in mammalian cells.

Authors:  Drew M Dolino; Swarna S Ramaswamy; Vasanthi Jayaraman
Journal:  J Vis Exp       Date:  2014-09-16       Impact factor: 1.355

7.  Cryo-EM structure of the ASIC1a-mambalgin-1 complex reveals that the peptide toxin mambalgin-1 inhibits acid-sensing ion channels through an unusual allosteric effect.

Authors:  Demeng Sun; You Yu; Xiaobin Xue; Man Pan; Ming Wen; Siyu Li; Qian Qu; Xiaorun Li; Longhua Zhang; Xueming Li; Lei Liu; Maojun Yang; Changlin Tian
Journal:  Cell Discov       Date:  2018-06-05       Impact factor: 10.849

Review 8.  Coupling structure with function in acid-sensing ion channels: challenges in pursuit of proton sensors.

Authors:  Matthew L Rook; Maria Musgaard; David M MacLean
Journal:  J Physiol       Date:  2020-05-20       Impact factor: 5.182

9.  Gating mechanisms of acid-sensing ion channels.

Authors:  Nate Yoder; Craig Yoshioka; Eric Gouaux
Journal:  Nature       Date:  2018-03-07       Impact factor: 49.962

10.  Structural insights into human acid-sensing ion channel 1a inhibition by snake toxin mambalgin1.

Authors:  Demeng Sun; Sanling Liu; Siyu Li; Mengge Zhang; Fan Yang; Ming Wen; Pan Shi; Tao Wang; Man Pan; Shenghai Chang; Xing Zhang; Longhua Zhang; Changlin Tian; Lei Liu
Journal:  Elife       Date:  2020-09-11       Impact factor: 8.140

  10 in total

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