Literature DB >> 24192529

A computer-assisted multi-electrode patch-clamp system.

Rodrigo Perin1, Henry Markram.   

Abstract

The patch-clamp technique is today the most well-established method for recording electrical activity from individual neurons or their subcellular compartments. Nevertheless, achieving stable recordings, even from individual cells, remains a time-consuming procedure of considerable complexity. Automation of many steps in conjunction with efficient information display can greatly assist experimentalists in performing a larger number of recordings with greater reliability and in less time. In order to achieve large-scale recordings we concluded the most efficient approach is not to fully automatize the process but to simplify the experimental steps and reduce the chances of human error while efficiently incorporating the experimenter's experience and visual feedback. With these goals in mind we developed a computer-assisted system which centralizes all the controls necessary for a multi-electrode patch-clamp experiment in a single interface, a commercially available wireless gamepad, while displaying experiment related information and guidance cues on the computer screen. Here we describe the different components of the system which allowed us to reduce the time required for achieving the recording configuration and substantially increase the chances of successfully recording large numbers of neurons simultaneously.

Entities:  

Mesh:

Year:  2013        PMID: 24192529      PMCID: PMC3948366          DOI: 10.3791/50630

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  13 in total

1.  Monosynaptic restriction of transsynaptic tracing from single, genetically targeted neurons.

Authors:  Ian R Wickersham; David C Lyon; Richard J O Barnard; Takuma Mori; Stefan Finke; Karl-Klaus Conzelmann; John A T Young; Edward M Callaway
Journal:  Neuron       Date:  2007-03-01       Impact factor: 17.173

2.  Frequency-dependent disynaptic inhibition in the pyramidal network: a ubiquitous pathway in the developing rat neocortex.

Authors:  Thomas K Berger; Rodrigo Perin; Gilad Silberberg; Henry Markram
Journal:  J Physiol       Date:  2009-09-21       Impact factor: 5.182

3.  Patterned photostimulation with digital micromirror devices to investigate dendritic integration across branch points.

Authors:  Conrad W Liang; Michael Mohammadi; M Daniel Santos; M Danial Santos; Cha-Min Tang
Journal:  J Vis Exp       Date:  2011-03-02       Impact factor: 1.355

4.  Ephaptic coupling of cortical neurons.

Authors:  Costas A Anastassiou; Rodrigo Perin; Henry Markram; Christof Koch
Journal:  Nat Neurosci       Date:  2011-01-16       Impact factor: 24.884

5.  A synaptic organizing principle for cortical neuronal groups.

Authors:  Rodrigo Perin; Thomas K Berger; Henry Markram
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

6.  Dense inhibitory connectivity in neocortex.

Authors:  Elodie Fino; Rafael Yuste
Journal:  Neuron       Date:  2011-03-24       Impact factor: 17.173

7.  SLM Microscopy: Scanless Two-Photon Imaging and Photostimulation with Spatial Light Modulators.

Authors:  Volodymyr Nikolenko; Brendon O Watson; Roberto Araya; Alan Woodruff; Darcy S Peterka; Rafael Yuste
Journal:  Front Neural Circuits       Date:  2008-12-19       Impact factor: 3.492

8.  Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation.

Authors:  Rohit Prakash; Ofer Yizhar; Benjamin Grewe; Charu Ramakrishnan; Nancy Wang; Inbal Goshen; Adam M Packer; Darcy S Peterka; Rafael Yuste; Mark J Schnitzer; Karl Deisseroth
Journal:  Nat Methods       Date:  2012-12       Impact factor: 28.547

9.  Brief bursts self-inhibit and correlate the pyramidal network.

Authors:  Thomas K Berger; Gilad Silberberg; Rodrigo Perin; Henry Markram
Journal:  PLoS Biol       Date:  2010-09-07       Impact factor: 8.029

10.  Automated whole-cell patch-clamp electrophysiology of neurons in vivo.

Authors:  Suhasa B Kodandaramaiah; Giovanni Talei Franzesi; Brian Y Chow; Edward S Boyden; Craig R Forest
Journal:  Nat Methods       Date:  2012-05-06       Impact factor: 28.547

View more
  17 in total

1.  MATLAB-based automated patch-clamp system for awake behaving mice.

Authors:  Niraj S Desai; Jennifer J Siegel; William Taylor; Raymond A Chitwood; Daniel Johnston
Journal:  J Neurophysiol       Date:  2015-06-17       Impact factor: 2.714

2.  Microchip amplifier for in vitro, in vivo, and automated whole cell patch-clamp recording.

Authors:  Reid R Harrison; Ilya Kolb; Suhasa B Kodandaramaiah; Alexander A Chubykin; Aimei Yang; Mark F Bear; Edward S Boyden; Craig R Forest
Journal:  J Neurophysiol       Date:  2014-11-26       Impact factor: 2.714

3.  Integration of autopatching with automated pipette and cell detection in vitro.

Authors:  Qiuyu Wu 吴秋雨; Ilya Kolb; Brendan M Callahan; Zhaolun Su; William Stoy; Suhasa B Kodandaramaiah; Rachael Neve; Hongkui Zeng; Edward S Boyden; Craig R Forest; Alexander A Chubykin
Journal:  J Neurophysiol       Date:  2016-07-06       Impact factor: 2.714

4.  Application of Automated Image-guided Patch Clamp for the Study of Neurons in Brain Slices.

Authors:  Qiuyu Wu; Alexander A Chubykin
Journal:  J Vis Exp       Date:  2017-07-31       Impact factor: 1.355

5.  A comprehensive knowledge base of synaptic electrophysiology in the rodent hippocampal formation.

Authors:  Keivan Moradi; Giorgio A Ascoli
Journal:  Hippocampus       Date:  2019-08-31       Impact factor: 3.899

6.  Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq.

Authors:  Cathryn R Cadwell; Federico Scala; Shuang Li; Giulia Livrizzi; Shan Shen; Rickard Sandberg; Xiaolong Jiang; Andreas S Tolias
Journal:  Nat Protoc       Date:  2017-11-16       Impact factor: 13.491

7.  Method for Rapid Enzymatic Cleaning for Reuse of Patch Clamp Pipettes: Increasing Throughput by Eliminating Manual Pipette Replacement between Patch Clamp Attempts.

Authors:  Corey R Landry; Mighten C Yip; Ilya Kolb; William A Stoy; Mercedes M Gonzalez; Craig R Forest
Journal:  Bio Protoc       Date:  2021-07-20

8.  Closed-Loop Real-Time Imaging Enables Fully Automated Cell-Targeted Patch-Clamp Neural Recording In Vivo.

Authors:  Ho-Jun Suk; Ingrid van Welie; Suhasa B Kodandaramaiah; Brian Allen; Craig R Forest; Edward S Boyden
Journal:  Neuron       Date:  2017-08-30       Impact factor: 17.173

9.  Single neuron recording: progress towards high-throughput analysis.

Authors:  Andrew Alegria; Amey Joshi; Jacob O'Brien; Suhasa B Kodandaramaiah
Journal:  Bioelectron Med (Lond)       Date:  2020-09-17

10.  Imaging Voltage in Complete Neuronal Networks Within Patterned Microislands Reveals Preferential Wiring of Excitatory Hippocampal Neurons.

Authors:  Alison S Walker; Benjamin K Raliski; Dat Vinh Nguyen; Patrick Zhang; Kate Sanders; Kaveh Karbasi; Evan W Miller
Journal:  Front Neurosci       Date:  2021-05-13       Impact factor: 5.152

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.