Literature DB >> 24192366

Preliminary crystallographic analysis of RraB from Escherichia coli.

Hui Shen1, Huihui Liu, Hong Wang, Maikun Teng, Xu Li.   

Abstract

RraB, an inhibitor of the essential endoribonuclease RNE in Escherichia coli, is essential in regulating the abundance of RNA by directly interacting with RNE. In this study, RraB from E. coli was cloned, expressed, purified and crystallized. The crystals belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 58.59, b = 58.34, c = 156.95 Å. X-ray diffraction data were collected to a resolution of 2.9 Å. Analysis of the native Patterson map revealed a peak of ∼37% the height of the origin peak in the ν = 0.5 Harker section, suggesting twofold noncrystallographic symmetry parallel to the b crystallographic axis. The Matthews coefficient and the solvent content were estimated to be 4.09 Å(3) Da(-1) and 69.94%, respectively, assuming the presence of two molecules in the asymmetric unit.

Entities:  

Keywords:  Escherichia coli; RraB

Mesh:

Substances:

Year:  2013        PMID: 24192366      PMCID: PMC3818050          DOI: 10.1107/S1744309113026559

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  16 in total

1.  A tale of two mRNA degradation pathways mediated by RNase E.

Authors:  Marie Bouvier; Agamemnon J Carpousis
Journal:  Mol Microbiol       Date:  2011-11-10       Impact factor: 3.501

2.  Solution structure of Vibrio cholerae protein VC0424: a variation of the ferredoxin-like fold.

Authors:  Theresa A Ramelot; Shuisong Ni; Sharon Goldsmith-Fischman; John R Cort; Barry Honig; Michael A Kennedy
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

3.  Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E.

Authors:  Anastasia J Callaghan; Jukka P Aurikko; Leopold L Ilag; J Günter Grossmann; Vidya Chandran; Karin Kühnel; Leonora Poljak; Agamennon J Carpousis; Carol V Robinson; Martyn F Symmons; Ben F Luisi
Journal:  J Mol Biol       Date:  2004-07-23       Impact factor: 5.469

Review 4.  The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.

Authors:  Agamemnon J Carpousis
Journal:  Annu Rev Microbiol       Date:  2007       Impact factor: 15.500

Review 5.  Degradation of mRNA in Escherichia coli: an old problem with some new twists.

Authors:  G A Coburn; G A Mackie
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1999

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Differential modulation of E. coli mRNA abundance by inhibitory proteins that alter the composition of the degradosome.

Authors:  Junjun Gao; Kangseok Lee; Meng Zhao; Ji Qiu; Xiaoming Zhan; Ankur Saxena; Christopher J Moore; Stanley N Cohen; George Georgiou
Journal:  Mol Microbiol       Date:  2006-06-12       Impact factor: 3.501

8.  The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site.

Authors:  K J McDowall; S N Cohen
Journal:  J Mol Biol       Date:  1996-01-26       Impact factor: 5.469

9.  Recognition and cooperation between the ATP-dependent RNA helicase RhlB and ribonuclease RNase E.

Authors:  Vidya Chandran; Leonora Poljak; Nathalie F Vanzo; Anne Leroy; Ricardo Núñez Miguel; Juan Fernandez-Recio; James Parkinson; Christopher Burns; Agamemnon J Carpousis; Ben F Luisi
Journal:  J Mol Biol       Date:  2006-12-12       Impact factor: 5.469

10.  Autoregulation of RNase E synthesis in Escherichia coli.

Authors:  C Jain; J G Belasco
Journal:  Nucleic Acids Symp Ser       Date:  1995
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