Literature DB >> 24186186

RFLP diversity in cultivated sorghum in relation to racial differentiation.

M Deu1, D Gonzalez-de-Leon, J C Glaszmann, I Degremont, J Chantereau, C Lanaud, P Hamon.   

Abstract

Careful assessment of the comparative diversity for molecular markers and for potentially-useful morpho-agronomic traits is paramount to the analysis of a genome through the mapping of favorable genes. Sorghum (Sorghum bicolor ssp.bicolor) varieties are traditionally classified into five races on the basis of morphological traits, especially panicle and grain traits. Isozyme diversity has provided a new insight into genetic diversity, and showed a marked geographic structure. We performed RFLP analysis on 94 varieties, chosen to represent the main cross combinations (race × geographic origin), using 35 maize probes that detect polymorphism with at least one of the two restriction enzymesHindIII andXbaI. A total of 50 polymorphic probe-enzyme combinations yielded 158 polymorphic bands. The bicolor race appeared highly variable and included many rare markers. Among the other races multivariate analysis of the data differentiated six clusters corresponding, by decreasing magnitude of divergence, to: the margaritiferum types (a sub-race of race guinea); the guinea forms from western Africa; race caudatum; race durra; race kafir; and the guinea forms from southern Africa.The apparent geographic differentiation was related to the contrasting distribution of these races and to a higher similarity between races localized in southern Africa. The data agree with the current hypotheses on sorghum domestication but reveal associations between neutral markers and traits probably highly subjected to human selection. Whether such associations will be observed with other useful traits, and to what extent they are maintained by genetic linkage, is worth exploring.

Entities:  

Year:  1994        PMID: 24186186     DOI: 10.1007/BF01253994

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  7 in total

1.  Similarity of maize and sorghum genomes as revealed by maize RFLP probes.

Authors:  G Binelli; L Gianfranceschi; M E Pè; G Taramino; C Busso; J Stenhouse; E Ottaviano
Journal:  Theor Appl Genet       Date:  1992-06       Impact factor: 5.699

2.  Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes.

Authors:  S H Hulbert; T E Richter; J D Axtell; J L Bennetzen
Journal:  Proc Natl Acad Sci U S A       Date:  1990-06       Impact factor: 11.205

3.  A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.

Authors:  A P Feinberg; B Vogelstein
Journal:  Anal Biochem       Date:  1983-07-01       Impact factor: 3.365

4.  Patterns of allozyme variation in cultivated and wild Sorghum bicolor.

Authors:  P R Aldrich; J Doebley; K F Schertz; A Stec
Journal:  Theor Appl Genet       Date:  1992-12       Impact factor: 5.699

5.  Restriction fragment variation in the nuclear and chloroplast genomes of cultivated and wild Sorghum bicolor.

Authors:  P R Aldrich; J Doebley
Journal:  Theor Appl Genet       Date:  1992-11       Impact factor: 5.699

6.  Comparative genome mapping of Sorghum and maize.

Authors:  R Whitkus; J Doebley; M Lee
Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

7.  Ribosomal gene spacer length variability in cultivated and wild rice species.

Authors:  F Cordesse; G Second; M Delseny
Journal:  Theor Appl Genet       Date:  1990-01       Impact factor: 5.699

  7 in total
  11 in total

1.  Local genetic diversity of sorghum in a village in northern Cameroon: structure and dynamics of landraces.

Authors:  Adeline Barnaud; Monique Deu; Eric Garine; Doyle McKey; Hélène I Joly
Journal:  Theor Appl Genet       Date:  2006-11-07       Impact factor: 5.699

2.  The pattern of genetic diversity of Guinea-race Sorghum bicolor (L.) Moench landraces as revealed with SSR markers.

Authors:  Rolf T Folkertsma; H Frederick W Rattunde; Subhash Chandra; G Soma Raju; C Tom Hash
Journal:  Theor Appl Genet       Date:  2005-06-18       Impact factor: 5.699

3.  Genetic diversity for aluminum tolerance in sorghum.

Authors:  F F Caniato; C T Guimarães; R E Schaffert; V M C Alves; L V Kochian; A Borém; P E Klein; J V Magalhaes
Journal:  Theor Appl Genet       Date:  2007-01-25       Impact factor: 5.699

4.  Assessment of genetic diversity in the sorghum reference set using EST-SSR markers.

Authors:  P Ramu; C Billot; J-F Rami; S Senthilvel; H D Upadhyaya; L Ananda Reddy; C T Hash
Journal:  Theor Appl Genet       Date:  2013-05-25       Impact factor: 5.699

5.  Impact of phenolic compounds and related enzymes in sorghum varieties for resistance and susceptibility to biotic and abiotic stresses.

Authors:  Mamoudou H Dicko; Harry Gruppen; Clarisse Barro; Alfred S Traore; Willem J H van Berkel; Alphons G J Voragen
Journal:  J Chem Ecol       Date:  2005-10-25       Impact factor: 2.626

6.  Variability of grain quality in sorghum: association with polymorphism in Sh2, Bt2, SssI, Ae1, Wx and O2.

Authors:  L F de Alencar Figueiredo; B Sine; J Chantereau; C Mestres; G Fliedel; J-F Rami; J-C Glaszmann; M Deu; B Courtois
Journal:  Theor Appl Genet       Date:  2010-06-22       Impact factor: 5.699

7.  Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers.

Authors:  M Deu; F Sagnard; J Chantereau; C Calatayud; D Hérault; C Mariac; J-L Pham; Y Vigouroux; I Kapran; P S Traore; A Mamadou; B Gerard; J Ndjeunga; G Bezançon
Journal:  Theor Appl Genet       Date:  2008-02-14       Impact factor: 5.699

8.  Phylogeographic evidence of crop neodiversity in sorghum.

Authors:  L F de Alencar Figueiredo; C Calatayud; C Dupuits; C Billot; J-F Rami; D Brunel; X Perrier; B Courtois; M Deu; J-C Glaszmann
Journal:  Genetics       Date:  2008-06       Impact factor: 4.562

9.  DArT markers: diversity analyses and mapping in Sorghum bicolor.

Authors:  Emma S Mace; Ling Xia; David R Jordan; Kirsten Halloran; Dipal K Parh; Eric Huttner; Peter Wenzl; Andrzej Kilian
Journal:  BMC Genomics       Date:  2008-01-22       Impact factor: 3.969

10.  Genetic structure and linkage disequilibrium in a diverse, representative collection of the C4 model plant, Sorghum bicolor.

Authors:  Yi-Hong Wang; Hari D Upadhyaya; A Millie Burrell; Sayed Mohammad Ebrahim Sahraeian; Robert R Klein; Patricia E Klein
Journal:  G3 (Bethesda)       Date:  2013-05-20       Impact factor: 3.154

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