Literature DB >> 24184848

Yeast PPR proteins, watchdogs of mitochondrial gene expression.

Christopher J Herbert1, Pawel Golik2, Nathalie Bonnefoy1.   

Abstract

PPR proteins are a family of ubiquitous RNA-binding factors, found in all the Eukaryotic lineages, and are particularly numerous in higher plants. According to recent bioinformatic analyses, yeast genomes encode from 10 (in S. pombe) to 15 (in S. cerevisiae) PPR proteins. All of these proteins are mitochondrial and very often interact with the mitochondrial membrane. Apart from the general factors, RNA polymerase and RNase P, most yeast PPR proteins are involved in the stability and/or translation of mitochondrially encoded RNAs. At present, some information concerning the target RNA(s) of most of these proteins is available, the next challenge will be to refine our understanding of the function of the proteins and to resolve the yeast PPR-RNA-binding code, which might differ significantly from the plant PPR code.

Entities:  

Keywords:  PPR; RNA metabolism; S. cerevisiae; S. pombe; budding yeast; fission yeast; mitochondria; penta-tricopeptide repeat; translation

Mesh:

Substances:

Year:  2013        PMID: 24184848      PMCID: PMC3858431          DOI: 10.4161/rna.25392

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  103 in total

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Journal:  Mol Biol Cell       Date:  1993-12       Impact factor: 4.138

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Journal:  Mol Gen Genet       Date:  1994-02

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Journal:  Curr Genet       Date:  1991-05       Impact factor: 3.886

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  12 in total

1.  Mitochondrial-nuclear co-evolution leads to hybrid incompatibility through pentatricopeptide repeat proteins.

Authors:  Han-Ying Jhuang; Hsin-Yi Lee; Jun-Yi Leu
Journal:  EMBO Rep       Date:  2016-12-05       Impact factor: 8.807

2.  Partial suppression of the respiratory defect of qrs1/her2 glutamyl-tRNA amidotransferase mutants by overexpression of the mitochondrial pentatricopeptide Msc6p.

Authors:  Bruno S Moda; José Ribamar Ferreira-Júnior; Mario H Barros
Journal:  Curr Genet       Date:  2016-01-16       Impact factor: 3.886

3.  Yeast mitochondrial protein Pet111p binds directly to two distinct targets in COX2 mRNA, suggesting a mechanism of translational activation.

Authors:  Julia L Jones; Katharina B Hofmann; Andrew T Cowan; Dmitry Temiakov; Patrick Cramer; Michael Anikin
Journal:  J Biol Chem       Date:  2019-03-25       Impact factor: 5.157

4.  The pentatricopeptide repeat protein Rmd9 recognizes the dodecameric element in the 3'-UTRs of yeast mitochondrial mRNAs.

Authors:  Hauke S Hillen; Dmitriy A Markov; Ireneusz D Wojtas; Katharina B Hofmann; Michael Lidschreiber; Andrew T Cowan; Julia L Jones; Dmitry Temiakov; Patrick Cramer; Michael Anikin
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-13       Impact factor: 12.779

5.  Heterogeneity of the 5'-end in plant mRNA may be involved in mitochondrial translation.

Authors:  Tomohiko Kazama; Yusuke Yagi; Kinya Toriyama; Takahiro Nakamura
Journal:  Front Plant Sci       Date:  2013-12-17       Impact factor: 5.753

6.  Drosophila melanogaster LRPPRC2 is involved in coordination of mitochondrial translation.

Authors:  Francesca Baggio; Ana Bratic; Arnaud Mourier; Timo E S Kauppila; Luke S Tain; Christian Kukat; Bianca Habermann; Linda Partridge; Nils-Göran Larsson
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 16.971

7.  The transcriptome of Candida albicans mitochondria and the evolution of organellar transcription units in yeasts.

Authors:  Adam Kolondra; Karolina Labedzka-Dmoch; Joanna M Wenda; Katarzyna Drzewicka; Pawel Golik
Journal:  BMC Genomics       Date:  2015-10-21       Impact factor: 3.969

8.  Drosophila protease ClpXP specifically degrades DmLRPPRC1 controlling mitochondrial mRNA and translation.

Authors:  Yuichi Matsushima; Yuta Hirofuji; Masamune Aihara; Song Yue; Takeshi Uchiumi; Laurie S Kaguni; Dongchon Kang
Journal:  Sci Rep       Date:  2017-08-16       Impact factor: 4.379

9.  The Schizosaccharomyces pombe PPR protein Ppr10 associates with a novel protein Mpa1 and acts as a mitochondrial translational activator.

Authors:  Yirong Wang; Jianhua Yan; Qingzhen Zhang; Xuting Ma; Juan Zhang; Minghui Su; Xiaojun Wang; Ying Huang
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

10.  The S. pombe mitochondrial transcriptome.

Authors:  Jinjie Shang; Yanmei Yang; Lin Wu; Mengting Zou; Ying Huang
Journal:  RNA       Date:  2018-06-28       Impact factor: 4.942

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