Literature DB >> 24182002

Neural networks for local structure detection in polymorphic systems.

Philipp Geiger1, Christoph Dellago.   

Abstract

The accurate identification and classification of local ordered and disordered structures is an important task in atomistic computer simulations. Here, we demonstrate that properly trained artificial neural networks can be used for this purpose. Based on a neural network approach recently developed for the calculation of energies and forces, the proposed method recognizes local atomic arrangements from a set of symmetry functions that characterize the environment around a given atom. The algorithm is simple and flexible and it does not rely on the definition of a reference frame. Using the Lennard-Jones system as well as liquid water and ice as illustrative examples, we show that the neural networks developed here detect amorphous and crystalline structures with high accuracy even in the case of complex atomic arrangements, for which conventional structure detection approaches are unreliable.

Entities:  

Year:  2013        PMID: 24182002     DOI: 10.1063/1.4825111

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Order-parameter-aided temperature-accelerated sampling for the exploration of crystal polymorphism and solid-liquid phase transitions.

Authors:  Tang-Qing Yu; Pei-Yang Chen; Ming Chen; Amit Samanta; Eric Vanden-Eijnden; Mark Tuckerman
Journal:  J Chem Phys       Date:  2014-06-07       Impact factor: 3.488

Review 2.  Protons and Hydroxide Ions in Aqueous Systems.

Authors:  Noam Agmon; Huib J Bakker; R Kramer Campen; Richard H Henchman; Peter Pohl; Sylvie Roke; Martin Thämer; Ali Hassanali
Journal:  Chem Rev       Date:  2016-06-17       Impact factor: 60.622

3.  Unsupervised Learning Methods for Molecular Simulation Data.

Authors:  Aldo Glielmo; Brooke E Husic; Alex Rodriguez; Cecilia Clementi; Frank Noé; Alessandro Laio
Journal:  Chem Rev       Date:  2021-05-04       Impact factor: 60.622

4.  A deep learning approach to the structural analysis of proteins.

Authors:  Marco Giulini; Raffaello Potestio
Journal:  Interface Focus       Date:  2019-04-19       Impact factor: 3.906

5.  A generalized deep learning approach for local structure identification in molecular simulations.

Authors:  Ryan S DeFever; Colin Targonski; Steven W Hall; Melissa C Smith; Sapna Sarupria
Journal:  Chem Sci       Date:  2019-07-11       Impact factor: 9.825

6.  Machine learning-accelerated quantum mechanics-based atomistic simulations for industrial applications.

Authors:  Tobias Morawietz; Nongnuch Artrith
Journal:  J Comput Aided Mol Des       Date:  2020-10-09       Impact factor: 3.686

  6 in total

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