Literature DB >> 24174439

Nonhuman primate models in the genomic era: a paradigm shift.

Eric J Vallender, Gregory M Miller.   

Abstract

Because of their strong similarities to humans across physiologic, developmental, behavioral, immunologic, and genetic levels, nonhuman primates are essential models for a wide spectrum of biomedical research. But unlike other animal models, nonhuman primates possess substantial outbred genetic variation, reducing statistical power and potentially confounding interpretation of results in research studies. Although unknown genetic variation is a hindrance in studies that allocate animals randomly, taking genetic variation into account in study design affords an opportunity to transform the way that nonhuman primates are used in biomedical research. New understandings of how the function of individual genes in rhesus macaques mimics that seen in humans are greatly advancing the rhesus macaques utility as research models, but epistatic interaction, epigenetic regulatory mechanisms, and the intricacies of gene networks limit model development. We are now entering a new era of nonhuman primate research, brought on by the proliferation and rapid expansion of genomic data. Already the cost of a rhesus macaque genome is dwarfed by its purchase and husbandry costs, and complete genomic datasets will inevitably encompass each rhesus macaque used in biomedical research. Advancing this outcome is paramount. It represents an opportunity to transform the way animals are assigned and used in biomedical research and to develop new models of human disease. The genetic and genomic revolution brings with it a paradigm shift for nonhuman primates and new mandates on how nonhuman primates are used in biomedical research.

Entities:  

Keywords:  candidate gene; drug development; macaque; personalized medicine; pharmacogenomics; physiogenetics; polymorphism; stress

Mesh:

Year:  2013        PMID: 24174439      PMCID: PMC3814397          DOI: 10.1093/ilar/ilt044

Source DB:  PubMed          Journal:  ILAR J        ISSN: 1084-2020


  128 in total

Review 1.  Stress, genes and the mechanism of programming the brain for later life.

Authors:  E Ronald de Kloet; Rosana M Sibug; Frans M Helmerhorst; Mathias V Schmidt; Mathias Schmidt
Journal:  Neurosci Biobehav Rev       Date:  2004-12-09       Impact factor: 8.989

2.  Allelic heterogeneity at the serotonin transporter locus (SLC6A4) confers susceptibility to autism and rigid-compulsive behaviors.

Authors:  James S Sutcliffe; Ryan J Delahanty; Harish C Prasad; Jacob L McCauley; Qiao Han; Lan Jiang; Chun Li; Susan E Folstein; Randy D Blakely
Journal:  Am J Hum Genet       Date:  2005-07-01       Impact factor: 11.025

3.  Monoamine oxidase A gene promoter variation and rearing experience influences aggressive behavior in rhesus monkeys.

Authors:  Timothy K Newman; Yana V Syagailo; Christina S Barr; Jens R Wendland; Maribeth Champoux; Markus Graessle; Stephen J Suomi; J Dee Higley; Klaus-Peter Lesch
Journal:  Biol Psychiatry       Date:  2005-01-15       Impact factor: 13.382

Review 4.  MHC polymorphism: AIDS susceptibility in non-human primates.

Authors:  Ronald E Bontrop; David I Watkins
Journal:  Trends Immunol       Date:  2005-04       Impact factor: 16.687

5.  Influence of CYP2B6 polymorphism on plasma and intracellular concentrations and toxicity of efavirenz and nevirapine in HIV-infected patients.

Authors:  Margalida Rotger; Sara Colombo; Hansjakob Furrer; Gabriela Bleiber; Thierry Buclin; Belle L Lee; Olivia Keiser; Jérôme Biollaz; Laurent Décosterd; Amalio Telenti
Journal:  Pharmacogenet Genomics       Date:  2005-01       Impact factor: 2.089

6.  Distribution of corticotropin-releasing hormone promoter polymorphism in different ethnic groups: evidence for natural selection in human populations.

Authors:  C G Baerwald; C C Mok; M S Fife; M Tikly; C S Lau; B P Wordsworth; B Ollier; G S Panayi; J S Lanchbury
Journal:  Immunogenetics       Date:  1999-09       Impact factor: 2.846

7.  A novel allele in the promoter region of the human serotonin transporter gene.

Authors:  E Michaelovsky; A Frisch; R Rockah; L Peleg; N Magal; M Shohat; R Weizman
Journal:  Mol Psychiatry       Date:  1999-01       Impact factor: 15.992

Review 8.  Clinical consequences of cytochrome P450 2C9 polymorphisms.

Authors:  Julia Kirchheiner; Jürgen Brockmöller
Journal:  Clin Pharmacol Ther       Date:  2005-01       Impact factor: 6.875

9.  The evolution of trichromatic color vision by opsin gene duplication in New World and Old World primates.

Authors:  K S Dulai; M von Dornum; J D Mollon; D M Hunt
Journal:  Genome Res       Date:  1999-07       Impact factor: 9.043

10.  Primate evolution of an olfactory receptor cluster: diversification by gene conversion and recent emergence of pseudogenes.

Authors:  D Sharon; G Glusman; Y Pilpel; M Khen; F Gruetzner; T Haaf; D Lancet
Journal:  Genomics       Date:  1999-10-01       Impact factor: 5.736

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  28 in total

1.  Progress in genetics and genomics of nonhuman primates. Introduction.

Authors:  John D Harding
Journal:  ILAR J       Date:  2013

2.  Opportunities and challenges in modeling human brain disorders in transgenic primates.

Authors:  Charles G Jennings; Rogier Landman; Yang Zhou; Jitendra Sharma; Julia Hyman; J Anthony Movshon; Zilong Qiu; Angela C Roberts; Anna Wang Roe; Xiaoqin Wang; Huihui Zhou; Liping Wang; Feng Zhang; Robert Desimone; Guoping Feng
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

Review 3.  Genomic Tools for the Use of Nonhuman Primates in Translational Research.

Authors:  John D Harding
Journal:  ILAR J       Date:  2017-07-01

4.  Development of Humanized Mice in the Age of Genome Editing.

Authors:  Vishnu Hosur; Benjamin E Low; Cindy Avery; Leonard D Shultz; Michael V Wiles
Journal:  J Cell Biochem       Date:  2017-05-15       Impact factor: 4.429

5.  Cynomolgus macaque (Macaca fascicularis) immunoglobulin heavy chain locus description.

Authors:  Guo-Yun Yu; Suzanne Mate; Karla Garcia; Michael D Ward; Ernst Brueggemann; Matthew Hall; Tara Kenny; Mariano Sanchez-Lockhart; Marie-Paule Lefranc; Gustavo Palacios
Journal:  Immunogenetics       Date:  2016-05-27       Impact factor: 2.846

6.  Identification of the major histocompatibility complex class-II DM and DO alleles in a cohort of northern pig-tailed macaques (Macaca leonina).

Authors:  Xiao-Dong Lian; Xi-He Zhang; Zheng-Xi Dai; Yong-Tang Zheng
Journal:  Immunogenetics       Date:  2017-10-13       Impact factor: 2.846

7.  Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque.

Authors:  Koji Yasuda; Keunyoung Oh; Boyu Ren; Timothy L Tickle; Eric A Franzosa; Lynn M Wachtman; Andrew D Miller; Susan V Westmoreland; Keith G Mansfield; Eric J Vallender; Gregory M Miller; James K Rowlett; Dirk Gevers; Curtis Huttenhower; Xochitl C Morgan
Journal:  Cell Host Microbe       Date:  2015-02-26       Impact factor: 21.023

8.  Discovery of novel MHC-class I alleles and haplotypes in Filipino cynomolgus macaques (Macaca fascicularis) by pyrosequencing and Sanger sequencing: Mafa-class I polymorphism.

Authors:  Takashi Shiina; Yukiho Yamada; Alice Aarnink; Shingo Suzuki; Anri Masuya; Sayaka Ito; Daisuke Ido; Hisashi Yamanaka; Chizuru Iwatani; Hideaki Tsuchiya; Hirohito Ishigaki; Yasushi Itoh; Kazumasa Ogasawara; Jerzy K Kulski; Antoine Blancher
Journal:  Immunogenetics       Date:  2015-09-08       Impact factor: 2.846

Review 9.  CRISPR technologies for the treatment of Duchenne muscular dystrophy.

Authors:  Eunyoung Choi; Taeyoung Koo
Journal:  Mol Ther       Date:  2021-04-03       Impact factor: 11.454

Review 10.  Current Advancements in Animal Models of Postsurgical Lymphedema: A Systematic Review.

Authors:  Jerry F Hsu; Roy P Yu; Eloise W Stanton; Jin Wang; Alex K Wong
Journal:  Adv Wound Care (New Rochelle)       Date:  2021-08-27       Impact factor: 4.947

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