Literature DB >> 24166640

Can the spread of agriculture in Europe be followed by tracing the spread of the weed Silene latifolia. A RAPD study.

P Vellekoop1, J B Buntjer, J W Maas, J van Brederode.   

Abstract

On the basis of gene frequency data of three flavone glycosylating genes, populations of the agricultural weed Silene latifolia (Caryophyllaceae) in Europe can be divided into two chemical races: an eastern and a western race. Morphological data also show a clear east-west division. When the two datasets are combined at least nine different geographical races can be distinguished using cluster analysis. Because these observations are hard to explain by selection, it has been proposed that these different races probably originated as a consequence of migration during the spread of agriculture over Europe in the past. To discriminate between selection and genetic drift many more selectively neutral easy-to-score characters are needed. In order to test whether random amplified polymorphic DNAs (RAPDs) might be suitable for this purpose, we performed a small-scale RAPD analysis on 16 geographical different populations. Using Jaccard's coefficient of similarity, we calculated genetic distances by pair-wise comparisons of both unique and shared amplification products, and a dendrogram was subsequently constructed using an unweighted pair-group method with arithmetical averages (UPGMA). On the basis of the dendrogram two clusters were discerned that clearly coincide with the aforementioned east-west division in populations. As there has been little or no artificial selection on this weed, its migration routes may be a good reflection of the different geographical routes agriculture has taken. We propose that a phylogenetic analysis of RAPD data of many more populations may provide additional information on the spread of agriculture over Europe.

Entities:  

Year:  1996        PMID: 24166640     DOI: 10.1007/BF00224053

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  15 in total

Review 1.  Applications of random amplified polymorphic DNA (RAPD) in molecular ecology.

Authors:  H Hadrys; M Balick; B Schierwater
Journal:  Mol Ecol       Date:  1992-05       Impact factor: 6.185

2.  DNA amplification fingerprinting using very short arbitrary oligonucleotide primers.

Authors:  G Caetano-Anollés; B J Bassam; P M Gresshoff
Journal:  Biotechnology (N Y)       Date:  1991-06

3.  Optimization of the PCR program for RAPD analysis.

Authors:  K Yu; K P Pauls
Journal:  Nucleic Acids Res       Date:  1992-05-25       Impact factor: 16.971

4.  Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations.

Authors:  R W Michelmore; I Paran; R V Kesseli
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

5.  The use of random amplified polymorphic DNA markers in wheat.

Authors:  K M Devos; M D Gale
Journal:  Theor Appl Genet       Date:  1992-08       Impact factor: 5.699

6.  DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.

Authors:  J G Williams; A R Kubelik; K J Livak; J A Rafalski; S V Tingey
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

7.  Application of the RAPD technique in tilapia fish: species and subspecies identification.

Authors:  F Bardakci; D O Skibinski
Journal:  Heredity (Edinb)       Date:  1994-08       Impact factor: 3.821

8.  Fingerprinting genomes using PCR with arbitrary primers.

Authors:  J Welsh; M McClelland
Journal:  Nucleic Acids Res       Date:  1990-12-25       Impact factor: 16.971

9.  Using randomly amplified polymorphic DNA for evaluating genetic relationships among papaya cultivars.

Authors:  J I Stiles; C Lemme; S Sondur; M B Morshidi; R Manshardt
Journal:  Theor Appl Genet       Date:  1993-02       Impact factor: 5.699

10.  Potential use of random amplified polymorphic DNA (RAPD) technique to study the genetic diversity in Indian mustard (Brassica juncea) and its relationship to heterosis.

Authors:  A Jain; S Bhatia; S S Banga; S Prakash; M Lakshmikumaran
Journal:  Theor Appl Genet       Date:  1994-04       Impact factor: 5.699

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  4 in total

1.  Molecular and quantitative genetic differentiation in European populations of Silene latifolia (Caryophyllaceae).

Authors:  Céline Jolivet; Giorgina Bernasconi
Journal:  Ann Bot       Date:  2007-06-12       Impact factor: 4.357

2.  Extreme population structure and high interspecific divergence of the Silene Y chromosome.

Authors:  Joseph E Ironside; Dmitry A Filatov
Journal:  Genetics       Date:  2005-07-05       Impact factor: 4.562

3.  A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants.

Authors:  Michael Nicolas; Gabriel Marais; Vladka Hykelova; Bohuslav Janousek; Valérie Laporte; Boris Vyskot; Dominique Mouchiroud; Ioan Negrutiu; Deborah Charlesworth; Françoise Monéger
Journal:  PLoS Biol       Date:  2004-12-21       Impact factor: 8.029

4.  The slowdown of Y chromosome expansion in dioecious Silene latifolia due to DNA loss and male-specific silencing of retrotransposons.

Authors:  Janka Puterova; Zdenek Kubat; Eduard Kejnovsky; Wojciech Jesionek; Jana Cizkova; Boris Vyskot; Roman Hobza
Journal:  BMC Genomics       Date:  2018-02-20       Impact factor: 3.969

  4 in total

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