Literature DB >> 24166233

Evaluating performance of risk identification methods through a large-scale simulation of observational data.

Patrick B Ryan1, Martijn J Schuemie.   

Abstract

BACKGROUND: There has been only limited evaluation of statistical methods for identifying safety risks of drug exposure in observational healthcare data. Simulations can support empirical evaluation, but have not been shown to adequately model the real-world phenomena that challenge observational analyses.
OBJECTIVES: To design and evaluate a probabilistic framework (OSIM2) for generating simulated observational healthcare data, and to use this data for evaluating the performance of methods in identifying associations between drug exposure and health outcomes of interest. RESEARCH
DESIGN: Seven observational designs, including case-control, cohort, self-controlled case series, and self-controlled cohort design were applied to 399 drug-outcome scenarios in 6 simulated datasets with no effect and injected relative risks of 1.25, 1.5, 2, 4, and 10, respectively.
SUBJECTS: Longitudinal data for 10 million simulated patients were generated using a model derived from an administrative claims database, with associated demographics, periods of drug exposure derived from pharmacy dispensings, and medical conditions derived from diagnoses on medical claims. MEASURES: Simulation validation was performed through descriptive comparison with real source data. Method performance was evaluated using Area Under ROC Curve (AUC), bias, and mean squared error.
RESULTS: OSIM2 replicates prevalence and types of confounding observed in real claims data. When simulated data are injected with relative risks (RR) ≥ 2, all designs have good predictive accuracy (AUC > 0.90), but when RR < 2, no methods achieve 100 % predictions. Each method exhibits a different bias profile, which changes with the effect size.
CONCLUSIONS: OSIM2 can support methodological research. Results from simulation suggest method operating characteristics are far from nominal properties.

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Year:  2013        PMID: 24166233     DOI: 10.1007/s40264-013-0110-2

Source DB:  PubMed          Journal:  Drug Saf        ISSN: 0114-5916            Impact factor:   5.606


  15 in total

1.  Design and validation of a data simulation model for longitudinal healthcare data.

Authors:  Richard E Murray; Patrick B Ryan; Stephanie J Reisinger
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

2.  Effects of adjusting for instrumental variables on bias and precision of effect estimates.

Authors:  Jessica A Myers; Jeremy A Rassen; Joshua J Gagne; Krista F Huybrechts; Sebastian Schneeweiss; Kenneth J Rothman; Marshall M Joffe; Robert J Glynn
Journal:  Am J Epidemiol       Date:  2011-10-24       Impact factor: 4.897

3.  Evaluating uses of data mining techniques in propensity score estimation: a simulation study.

Authors:  Soko Setoguchi; Sebastian Schneeweiss; M Alan Brookhart; Robert J Glynn; E Francis Cook
Journal:  Pharmacoepidemiol Drug Saf       Date:  2008-06       Impact factor: 2.890

4.  Empirical performance of the self-controlled case series design: lessons for developing a risk identification and analysis system.

Authors:  Marc A Suchard; Ivan Zorych; Shawn E Simpson; Martijn J Schuemie; Patrick B Ryan; David Madigan
Journal:  Drug Saf       Date:  2013-10       Impact factor: 5.606

5.  Empirical performance of the case-control method: lessons for developing a risk identification and analysis system.

Authors:  David Madigan; Martijn J Schuemie; Patrick B Ryan
Journal:  Drug Saf       Date:  2013-10       Impact factor: 5.606

6.  Implications of M bias in epidemiologic studies: a simulation study.

Authors:  Wei Liu; M Alan Brookhart; Sebastian Schneeweiss; Xiaojuan Mi; Soko Setoguchi
Journal:  Am J Epidemiol       Date:  2012-10-25       Impact factor: 4.897

7.  Empirical performance of the calibrated self-controlled cohort analysis within temporal pattern discovery: lessons for developing a risk identification and analysis system.

Authors:  G Niklas Norén; Tomas Bergvall; Patrick B Ryan; Kristina Juhlin; Martijn J Schuemie; David Madigan
Journal:  Drug Saf       Date:  2013-10       Impact factor: 5.606

Review 8.  Defining a reference set to support methodological research in drug safety.

Authors:  Patrick B Ryan; Martijn J Schuemie; Emily Welebob; Jon Duke; Sarah Valentine; Abraham G Hartzema
Journal:  Drug Saf       Date:  2013-10       Impact factor: 5.606

9.  Evaluation of disproportionality safety signaling applied to healthcare databases.

Authors:  William DuMouchel; Patrick B Ryan; Martijn J Schuemie; David Madigan
Journal:  Drug Saf       Date:  2013-10       Impact factor: 5.606

10.  The impact of residual and unmeasured confounding in epidemiologic studies: a simulation study.

Authors:  Zoe Fewell; George Davey Smith; Jonathan A C Sterne
Journal:  Am J Epidemiol       Date:  2007-07-05       Impact factor: 4.897

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  15 in total

1.  How Confident Are We about Observational Findings in Healthcare: A Benchmark Study.

Authors:  Martijn J Schuemie; M Soledad Cepeda; Marc A Suchard; Jianxiao Yang; Yuxi Tian; Alejandro Schuler; Patrick B Ryan; David Madigan; George Hripcsak
Journal:  Harv Data Sci Rev       Date:  2020-01-31

2.  Empirical performance of a new user cohort method: lessons for developing a risk identification and analysis system.

Authors:  Patrick B Ryan; Martijn J Schuemie; Susan Gruber; Ivan Zorych; David Madigan
Journal:  Drug Saf       Date:  2013-10       Impact factor: 5.606

3.  Replication of the OMOP experiment in Europe: evaluating methods for risk identification in electronic health record databases.

Authors:  Martijn J Schuemie; Rosa Gini; Preciosa M Coloma; Huub Straatman; Ron M C Herings; Lars Pedersen; Francesco Innocenti; Giampiero Mazzaglia; Gino Picelli; Johan van der Lei; Miriam C J M Sturkenboom
Journal:  Drug Saf       Date:  2013-10       Impact factor: 5.606

Review 4.  Desideratum for evidence based epidemiology.

Authors:  J Marc Overhage; Patrick B Ryan; Martijn J Schuemie; Paul E Stang
Journal:  Drug Saf       Date:  2013-10       Impact factor: 5.606

5.  Empirical performance of a self-controlled cohort method: lessons for developing a risk identification and analysis system.

Authors:  Patrick B Ryan; Martijn J Schuemie; David Madigan
Journal:  Drug Saf       Date:  2013-10       Impact factor: 5.606

6.  Empirical performance of LGPS and LEOPARD: lessons for developing a risk identification and analysis system.

Authors:  Martijn J Schuemie; David Madigan; Patrick B Ryan
Journal:  Drug Saf       Date:  2013-10       Impact factor: 5.606

7.  Authors' reply to Hennessy and Leonard's comment on "Desideratum for evidence-based epidemiology".

Authors:  J Marc Overhage; Patrick B Ryan; Martijn J Schuemie; Paul E Stang
Journal:  Drug Saf       Date:  2015-01       Impact factor: 5.606

8.  Classification-by-Analogy: Using Vector Representations of Implicit Relationships to Identify Plausibly Causal Drug/Side-effect Relationships.

Authors:  Justin Mower; Devika Subramanian; Ning Shang; Trevor Cohen
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

9.  Accuracy of an automated knowledge base for identifying drug adverse reactions.

Authors:  E A Voss; R D Boyce; P B Ryan; J van der Lei; P R Rijnbeek; M J Schuemie
Journal:  J Biomed Inform       Date:  2016-12-16       Impact factor: 6.317

10.  Evaluation of the Case-Crossover (CCO) Study Design for Adverse Drug Event Detection.

Authors:  Zachary Burningham; Tao He; Chia-Chen Teng; Xi Zhou; Jonathan Nebeker; Brian C Sauer
Journal:  Drug Saf       Date:  2017-09       Impact factor: 5.606

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