The design, synthesis, and evaluation of the potency of new isoform-selective inhibitors of sphingosine kinases 1 and 2 (SK1 and SK2), the enzyme that catalyzes the phosphorylation of d-erythro-sphingosine to produce the key signaling lipid, sphingosine 1-phosphate, are described. Recently, we reported that 1-(4-octylphenethyl)piperidin-4-ol (RB-005) is a selective inhibitor of SK1. Here we report the synthesis of 43 new analogues of RB-005, in which the lipophilic tail, polar headgroup, and linker region were modified to extend the structure-activity relationship profile for this lead compound, which we explain using modeling studies with the recently published crystal structure of SK1. We provide a basis for the key residues targeted by our profiled series and provide further evidence for the ability to discriminate between the two isoforms using pharmacological intervention.
The design, synthesis, and evaluation of the potency of new isoform-selective inhibitors of sphingosine kinases 1 and 2 (SK1 and SK2), the enzyme that catalyzes the phosphorylation of d-erythro-sphingosine to produce the key signaling lipid, sphingosine 1-phosphate, are described. Recently, we reported that 1-(4-octylphenethyl)piperidin-4-ol (RB-005) is a selective inhibitor of SK1. Here we report the synthesis of 43 new analogues of RB-005, in which the lipophilic tail, polar headgroup, and linker region were modified to extend the structure-activity relationship profile for this lead compound, which we explain using modeling studies with the recently published crystal structure of SK1. We provide a basis for the key residues targeted by our profiled series and provide further evidence for the ability to discriminate between the two isoforms using pharmacological intervention.
The
lipid kinase, sphingosine kinase (SK), plays a myriad of roles
in regulating cell survival, growth, and migration of mammalian cells
through its product, sphingosine 1-phosphate (S1P). S1P is a ligand
for five cell-surface G-protein-coupled receptors and for several
intracellular targets, such as histone deacetylases 1 and 2 (HDAC1/2,
which regulate gene expression).[1] There
are two isoforms of sphingosine kinase, SK1 and SK2, that are encoded
by different genes and that exhibit distinct biochemical properties,
substrate and inhibitor sensitivities, and subcellular distribution.
SK1 and SK2 have redundant roles to some extent as knockout of both
genes is embyronically lethal in mice, whereas animals survive when
either gene is removed alone.[2] Moreover,
there is evidence that both SK1 and SK2 play a similar role in certain
cancers.[3,4] Surprisingly, SK1 and SK2 may have opposing
roles in inflammation, being largely proinflammatory and antiinflammatory,
respectively. On the other hand, a proinflammatory role for SK2 in
other cell types has also been reported.[3] The differing roles of SK1 and SK2 in inflammatory disease and supporting
data from knockout mice make a compelling case for the development
of isoform-selective inhibitors in order to elucidate the functions
and roles of each isozyme and for designing drugs for therapeutic
intervention in pathophysiological processes such as inflammatory
diseases and cancer.Various SK inhibitors have been identified
(see Figure 1 for examples). Enzyme kinetic
studies show that
many of these are competitive with sphingosine (Sph). The initial
SK inhibitors were Sph analogues, such as d,l-threo-dihydrosphingosine which has a Ki of ∼5 μM.[3]N,N-Dimethylsphingosine also inhibits both
SK isoforms. The first SK1-selective inhibitor to be reported was
the water-soluble Sph analogue SK1-I (also known as BML-258; Ki ∼ 10 μM).[5] The most potent nanomolar SK1-selective inhibitor
is PF-543.[6] However, this
compound is also a substrate for SK1, thereby compromising data interpretation.
Analogues of the immunosuppressive agent FTY720 (Gilenya) have been
prepared using a synthetic route starting with 4-octylphenethyl alcohol
and were found to be SK1-selective inhibitors (e.g., RB-005).[7] FTY720 is an inhibitor of SK1[8] and also inhibits other sphingolipid-metabolizing
enzymes, such as ceramide synthase and S1P lyase.[9,10] We
also recently showed that SK1 contains an allosteric site.[11] Replacement of the amino group in (S)-FTY720-vinylphosphonate with an azido group changes this compound
from an allosteric inhibitor to an activator of SK1.[12] Therefore, allosteric inhibitors of SK1 are also an exciting
option for future study. With regard to SK2-selective inhibitors, ABC294640,[13] (R)-FTY720 methyl ether (ROMe),[14]K145 (3-(2-amino-ethyl)-5-[3-(4-butoxylphenyl)propylidene]thiazolidine-2,4-dione),[15] and SLR080811 ((S)-2-[3-(4-octylphenyl)-1,2,4-oxadiazol-5-yl]pyrrolidine-1-carboximidamide)[16] have Ki values in
the range of ∼1–10 μM. Taken together, it is clear
that there is still a need to develop new SK1 and SK2 inhibitors,
both to increase the number of selective tools that can be used to
interrogate the biology of these enzymes and to increase the possibility
of having useful new therapeutic agents to treat disease.
Figure 1
Structures of selected SK inhibitors.
In
a recent study, we showed that RB-005 is a highly
selective SK1 inhibitor.[7] Herein, we describe
the synthesis of analogues of the known SK1 inhibitors RB-005, FTY720,[8]SKi,[17] compounds 36a(18,19) and 82,[20]BML-258,[5]CB5468139,[21] and SLR080811(16) (Figure 2). These new analogues,
which were designed to possess some degree of structural similarity
to the known inhibitors, were evaluated through enzyme activity studies
as inhibitors of SK1 and SK2. Structure–activity relationship
(SAR) studies are discussed, which are supported by an analysis of
molecular modeling poses of the inhibitors in the active site of humanSK1.
Figure 2
Modifications introduced into the known SK inhibitors RB-005, SKi, SLR080811, 36a (VPC96091), and 82.
Structures of selected SK inhibitors.Modifications introduced into the known SK inhibitors RB-005, SKi, SLR080811, 36a (VPC96091), and 82.
Results and Discussion
The structures of the new compounds
and their key structural modifications
are shown in Tables 1–4.
Table 1
Piperidyl Analogues
of RB-005 Synthesized for Evaluation as SK Inhibitors
Table 4
Pyridine,
Pyridinium, and Triazole
Analogues of RB-005 Synthesized for Evaluation as SK
Inhibitors
Chemical Synthesis
Linker
Length
The synthetic routes we employed to prepare
compounds with one-, three-, and four-carbon tethers are displayed
in Scheme 1. The sole carbon atom of the hydroxymethyl
group of 4-iodobenzyl alcohol provided the tether in RB-023, whereas the three carbons of propargyl alcohol were the source
of the tether in RB-024. In each of these compounds,
a Sonogashira reaction followed by catalytic hydrogenation of the
alkyne intermediate (1 and 3) and a SN2 reaction of a mesylate intermediate derived from 2 and 4 with 4-hydroxypiperidine gave the desired compounds.
We used 4-(4-octylphenyl)butan-1-ol (5)[22] as the starting material for the preparation of RB-025.
Scheme 1
Synthesis of RB-023–RB-025
Reagents and conditions: (a)
1-octyne, Pd(PPh3)4, CuI, Et3N, 50
°C, 12 h; (b) Pd/C, H2, EtOAc, rt, 12 h; (c) (i) MsCl,
Et3N, CH2Cl2, 3 h, rt; (ii) 4-hydroxypiperidine,
MeCN, 50 °C, 12 h; (d) propargyl alcohol, Pd(PPh3)4, CuI, Et3N, 50 °C, 12 h.
Synthesis of RB-023–RB-025
Reagents and conditions: (a)
1-octyne, Pd(PPh3)4, CuI, Et3N, 50
°C, 12 h; (b) Pd/C, H2, EtOAc, rt, 12 h; (c) (i) MsCl,
Et3N, CH2Cl2, 3 h, rt; (ii) 4-hydroxypiperidine,
MeCN, 50 °C, 12 h; (d) propargyl alcohol, Pd(PPh3)4, CuI, Et3N, 50 °C, 12 h.
Modifications of the 4-Alkylphenyl and the Piperidyl Groups
Scheme 2 shows the synthetic pathways employed
to prepare RB-026–RB-033. After a
Sonogashira reaction was used to install an alkynyl group with 6–12
carbons, catalytic hydrogenation of 6 and 7 afforded alkyl derivatives 8 and 9, and
SN2 displacement as in Scheme 1 gave
the desired compounds in good yield. To assess the role of the hydroxyl
group in RB-005, RB-026, and RB-028 in inhibition of SK, we replaced this group with an azido group
via mesylation of the alcohol and reaction with sodium azide in DMF
to obtain 10, RB-029, and RB-030. Reduction of the azide afforded the amino derivatives, RB-031, RB-032, and RB-033.
Scheme 2
Synthesis of RB-026–RB-033
Reagents
and conditions: (a)
1-hexyne or 1-dodecyne, Pd(PPh3)4, CuI, Et3N, 50 °C, 12 h; (b) Pd/C, H2, EtOAc; (c) (i)
MsCl, Et3N, CH2Cl2; (ii) 4-hydroxypiperidine,
MeCN, 50 °C, 12 h; (d) (i) MsCl, Et3N, CH2Cl2, 3 h, rt; (ii) NaN3, DMF, 80–100
°C, 12 h; (e) Pd/C, H2, CH2Cl2/MeOH (1:3), rt, 12 h.
Synthesis of RB-026–RB-033
Reagents
and conditions: (a)
1-hexyne or 1-dodecyne, Pd(PPh3)4, CuI, Et3N, 50 °C, 12 h; (b) Pd/C, H2, EtOAc; (c) (i)
MsCl, Et3N, CH2Cl2; (ii) 4-hydroxypiperidine,
MeCN, 50 °C, 12 h; (d) (i) MsCl, Et3N, CH2Cl2, 3 h, rt; (ii) NaN3, DMF, 80–100
°C, 12 h; (e) Pd/C, H2, CH2Cl2/MeOH (1:3), rt, 12 h.Fluorination of RB-005 with diethylaminosulfur trifluoride
(DAST) gave RB-034 in 90% yield (Scheme 3). The 4-keto derivative RB-035 was synthesized
by oxidation of the 4-hydroxyl group of RB-005 with pyridinium
chlorochromate. Reaction of mesylate 11(7) with 4-methoxypiperidine provided RB-036.
Similarly, reaction of commercially available chiral pyrrolidines
containing a 3-hydroxyl or a 2-hydroxymethyl substituent gave RB-037–RB-043.
Scheme 3
Synthesis of RB-034–RB-043
Reagents
and conditions: (a)
DAST, CH2Cl2, 0 °C to rt, 5 h, rt; (b)
PCC, CH2Cl2, 4 h, rt; (c) cyclic amine, MeCN,
50 °C, 12 h.
Synthesis of RB-034–RB-043
Reagents
and conditions: (a)
DAST, CH2Cl2, 0 °C to rt, 5 h, rt; (b)
PCC, CH2Cl2, 4 h, rt; (c) cyclic amine, MeCN,
50 °C, 12 h.
Benzamide Derivatives
Benzamide-containing analogues RB-044–RB-050 were prepared from 4-iodobenzoic
acid as outlined in Scheme 4. Alkyne intermediate 12 was reduced to carboxylate 13, which was converted
to the acyl chloride with thionyl chloride and then treated with the
desired cyclic amine in the presence of potassium carbonate.
Scheme 4
Synthesis
of RB-044–RB-050 from
4-Iodobenzoic Acid
Reagents and conditions: (a)
1-octyne, Pd(PPh3)4, CuI, Et3N, 60
°C, 12 h; (b) Pd/C, H2, EtOAc, 12 h, rt; (c) (i) SOCl2, CH2Cl2, reflux, 12 h; (ii) cyclic
amine, K2CO3, MeCN, 50 °C, 12 h.
Synthesis
of RB-044–RB-050 from
4-Iodobenzoic Acid
Reagents and conditions: (a)
1-octyne, Pd(PPh3)4, CuI, Et3N, 60
°C, 12 h; (b) Pd/C, H2, EtOAc, 12 h, rt; (c) (i) SOCl2, CH2Cl2, reflux, 12 h; (ii) cyclic
amine, K2CO3, MeCN, 50 °C, 12 h.
Quaternary Ammonium Derivatives
To synthesize RB-052, which contains a pyridinium ion
in the polar headgroup,
we used the halogens in 1-bromo-4-iodobenzene to carry out two separate
Sonogashira reactions, as shown in Scheme 5. First, we used 1-octyne to prepare alkyne 14, which
reacted with 3-ethynylpyridine to give dialkyne 15. Reduction
of 15 yielded RB-051, and N-alkylation with
methyl iodide (5 equiv) in acetonitrile afforded the N-methylpyridinium saltRB-052.
Scheme 5
Synthesis of RB-051 and RB-052 from 1-Bromo-4-iodobenzene
Synthesis of RB-051 and RB-052 from 1-Bromo-4-iodobenzene
Reagents and conditions: (a)
1-octyne, Pd(PPh3)4, CuI, Et3N, 50
°C, 12 h; (b) 3-ethynylpyridine, Pd(PPh3)4, CuI, Et3N, 80 °C, 3 days; (c) Pd/C, H2, EtOAc, 12 h, rt; (d) K2CO3, MeI, MeCN, overnight,
rt.Pyridinium saltRB-053 was
prepared by a similar route,
as shown in Scheme 6. A Sonogashira reaction
of 4-iodobenzyl bromide with 1-octyne provided alkyne 16; displacement of bromide ion with 4-(4-methylpiperidin-1-yl)pyridine
(17) afforded alkyne 18, which provided RB-053 on catalytic hydrogenation in MeOH/CH2Cl2 (1:3).
Scheme 6
Synthesis of Pyridinium Salt RB-053 from
4-Iodobenzyl
Bromide and of 4-(4-Methylpiperidin-1-yl)pyridine (17) from 4-Chloropyridine Hydrochloride
Reagents
and conditions: (a)
1-octyne, Pd(PPh3)4, CuI, Et3N; (b)
4-methylpiperidine, DIPEA, MeCN, microwave heating, 160 °C, 1
h; (c) 17, 2-butanone, 100 °C, 3 days; (d) Pd/C,
H2, MeOH/CH2Cl2 (1:3).
Synthesis of Pyridinium Salt RB-053 from
4-Iodobenzyl
Bromide and of 4-(4-Methylpiperidin-1-yl)pyridine (17) from 4-Chloropyridine Hydrochloride
Reagents
and conditions: (a)
1-octyne, Pd(PPh3)4, CuI, Et3N; (b)
4-methylpiperidine, DIPEA, MeCN, microwave heating, 160 °C, 1
h; (c) 17, 2-butanone, 100 °C, 3 days; (d) Pd/C,
H2, MeOH/CH2Cl2 (1:3).
Triazole Derivatives
A Pd/Cu-catalyzed Sonogashira
reaction followed by a Cu(I)-catalyzed azide–alkyne 1,3-dipolar
addition (click reaction) was employed to prepare RB-054, in which a triazole ring bearing a pyridine substituent is the
headgroup (Scheme 7). Thus, Sonogashira coupling
of 1-octyne with 4-iodoaniline afforded alkynylaniline derivative 19. After conversion of amine 19 to aryl azide 20, the triazole ring was installed in a click reaction with
3-ethynylpyridine. Finally, catalytic hydrogenation of alkyne 21 gave RB-054.
Scheme 7
Synthesis of RB- 054 from 4-Iodoaniline
Reagents
and conditions: (a)
1-octyne, Pd(PPh3)4, CuI, Et3N, 60
°C, 12 h; (b) (i) 10% aq HCl, NaNO2; (ii) NaN3; (c) 3-ethynylpyridine, sodium ascorbate, CuSO4, t-BuOH/H2O (1:1); (d) Pd/C, H2, EtOAc, rt, 2 days.
Synthesis of RB- 054 from 4-Iodoaniline
Reagents
and conditions: (a)
1-octyne, Pd(PPh3)4, CuI, Et3N, 60
°C, 12 h; (b) (i) 10% aqHCl, NaNO2; (ii) NaN3; (c) 3-ethynylpyridine, sodium ascorbate, CuSO4, t-BuOH/H2O (1:1); (d) Pd/C, H2, EtOAc, rt, 2 days.We reversed the location
of the triazole in analogues RB057–RB-065. As shown in Scheme 8, the headgroup in these
analogues is a piperidyl derivative
and the lipophilic tail contains an alkyl-substituted triazole. Azides 22 and 23 were prepared from commercially available
4-aminophenol and 2-(4-aminophenyl)ethanol, respectively. The click
reaction with terminal alkynes afforded triazolesRB-055, 24, 25, and RB-056. To prepare RB-059–RB-065, alcohols 24, 25, and RB-056 were converted to their
corresponding mesylates 26, 27, and 28, which were treated with piperidine, 1-methylpiperidine,
or 4-hydroxypiperidine.
Scheme 8
Synthesis of RB-055–RB-065
Reagents and conditions: (a)
(i) 10% aq HCl, NaNO2; (ii) NaN3; (b) 1-decyne,
sodium ascorbate, CuSO4, t-BuOH/H2O (1:1), 12 h, rt; (c) acetylenic substrate (24, 1-hexyne; 25, 1-heptyne; RB-056, 1-decyne),
sodium ascorbate, CuSO4, t-BuOH, H2O; (d) MsCl, Et3N, CH2Cl2, 0 °C to rt, 5 h; (e) piperidine, MeCN (RB-059–RB-061), 1-methylpiperidine, MeCN (RB-060–RB-062) or 4-hydroxypiperidine, MeCN, 50 °C,
12 h (RB-063–RB-065).
Synthesis of RB-055–RB-065
Reagents and conditions: (a)
(i) 10% aqHCl, NaNO2; (ii) NaN3; (b) 1-decyne,
sodium ascorbate, CuSO4, t-BuOH/H2O (1:1), 12 h, rt; (c) acetylenic substrate (24, 1-hexyne; 25, 1-heptyne; RB-056, 1-decyne),
sodium ascorbate, CuSO4, t-BuOH, H2O; (d) MsCl, Et3N, CH2Cl2, 0 °C to rt, 5 h; (e) piperidine, MeCN (RB-059–RB-061), 1-methylpiperidine, MeCN (RB-060–RB-062) or 4-hydroxypiperidine, MeCN, 50 °C,
12 h (RB-063–RB-065).
Effects on SK1 and SK2 Activity and SAR
We previously
demonstrated the importance of the 4-hydroxypiperidinyl group in the
selective inhibition of SK1,[7] which was
subsequently confirmed by Gustin et al., who generated chiral piperidyl
analogues bearing hydroxyl and hydroxymethyl groups.[20] To examine SAR among a panel of related compounds, we prepared
a series of analogues bearing a 4-hydroxypiperidinyl group but varied
the linker length between the aryl group and the piperidine. We also
assessed the role of the alkyl substituent in the aryl group. To evaluate
compound selectivity against SK1 or SK2, the assays were performed
(see Supporting Information) using Sph
at concentrations of 3 and 10 μM (the Km values of SK1 and SK2, respectively), which corresponds to
50% substrate saturation and enables a qualitative estimation of selectivity
by comparing the % inhibition of each kinase using a fixed concentration
of inhibitor. We consider this approach to be an appropriate comparison
of selectivity, since both enzymes exhibit 50% occupancy with the
substrate. Compounds that were found to be effective inhibitors were
then analyzed in more detail by performing dose–response curves.We have previously shown that RB-005 (the “parent
compound”) is a selective inhibitor of SK1 and exhibits an
IC50 = 3.6 ± 0.38 μM at 3 μM Sph (which
corresponds to the Km of SK1) and reduces
SK1 activity by ∼90% at 50 μM RB-005.[7] The effect of linker length on potency was assessed
by comparing the % inhibition of SK1 and SK2 obtained with RB-023 (which has a one-carbon tether), RB-024 (three-carbon
tether), and RB-025 (four-carbon tether). The linker
length did not significantly alter the ability of RB-023, RB-024, and RB-025 to inhibit SK1 activity
(Figure 3). RB-023–RB-025 also retained selectivity for SK1 over SK2.
Figure 3
Effect of inhibitors on SK1 or SK2 activity.
SK1 activity was measured
using 3 μM Sph and 250 μM ATP. SK2 activity was assayed
using 10 μM Sph and 250 μM ATP (n = 3
for each compound; results are expressed as % of control ± SD).
RB series compounds were used at 50 μM. BML-258 (50 μM) inhibited SK1 activity by 74.5 ± 3.3% (n = 3). The control is 100% and equals activity against
Sph alone.
The
aliphatic chain at the para position of the benzene ring of
FTY720 is C8H17, which is known to be optimal
for the action of FTY720 on its targets such as S1P receptors.[23] Knott et al.[24] reported
that the ability of quaternary ammonium salts with a phenyl-substituted
cyclohexylamine scaffold to inhibit SK2 was affected by the alkyl
chain length. To examine the role of the alkyl substituent on the
benzene ring of RB-005, and thus the lipophilicity of
the molecule, we compared the inhibitory activity of RB-026 (which has a methyl group as the alkyl substituent), RB-027 (which has a n-hexyl group), RB-005 (which has a n-octyl group), and RB-028 (which has a n-dodecyl group). SK1 inhibition was
decreased by more than 6-fold in RB-026 compared with RB-023. The almost complete lack of inhibition displayed by RB-026 against SK1 indicates that a larger alkyl group than
a methyl group is required for inhibitory activity. We also evaluated
the effect of alkyl chain length in the lipophilic tail of compounds
in which the 4-hydroxypiperidinyl group was replaced by a 4-aminopiperidinyl
group (see below). Changing the n-octyl group of RB-032 to a methyl or n-dodecyl group gave RB-031 and RB-033, respectively, and eliminated
the inhibitory activity toward SK1. These results confirm the critical
requirement for the n-octyl group.Next, we
probed the role of the 4-hydroxyl group of RB-005 by
replacing it with an azido, amino, fluoro, keto, or methoxy group
(RB-029–RB-036). Azido replacement
(RB-029, RB-030) reduced SK1 inhibition
markedly, while replacement of the 4-hydroxyl group with an amino
group (RB-032) diminished the potency of SK1 inhibition
(Figure 4). The isoform selectivity of SK1
over SK2 was retained for RB-032, suggesting that the
amino group replacement maintains efficient binding to SK1. Replacement
of the 4-hydroxyl group of RB-005 with a fluoro (RB-034) or methoxy group (RB-036) eliminated
inhibitory activity against SK1, while replacement with a keto group
to produce RB-035 increased inhibition of SK2 and maintained
inhibition of SK1 but eliminated the isoform selectivity.
Figure 4
Effect of RB-032 on SK1 activity. Concentration-dependent
inhibition of SK1 activity by RB-032 using 3 μM
Sph and 250 μM ATP. The results are expressed as % of control
± SD; n = 3. The control is 100% and equals
activity against Sph alone. RB-032 inhibits SK1 activity
with IC50 = 16.9 ± 1.6 μM. RB-005 inhibits SK1 activity with IC50 = 3.6 ± 0.36 μM.[7]
To
examine the role of the piperidyl group in inhibition of SK,
we replaced it with a pyrrolidine ring; the hydroxyl-containing substituent
was retained (as either a chiral hydroxyl or a chiral hydroxymethyl
group), but its orientation was varied, as shown in compounds RB-037–RB-043. RB-037 and RB-038 retained inhibitory activity against SK1 despite having
opposite configurations at C-3 of the pyrrolidin-3-ol group. Stereoisomers RB-040 and RB-042, which differ in the length
of the aliphatic chain (C8H17 vs C12H5) but possess the R configuration at
C-2 of the 2-hydroxymethylpyrrolidinyl group, were equipotent inhibitors
of SK1 and SK2 (Figure 3 and Figure 5). The corresponding S enantiomers RB-041 and RB-043 were much less active (Figure 3). To establish whether RB-041 and RB-043 were capable of inhibiting SK1 and SK2 activity in
a concentration-dependent manner, we used a higher concentration of
each (100 μM, compared to the 50 μM concentration data
shown in Figure 3), and found that the inhibition
of SK1 and SK2 with RB-041 was 72.2 ± 5.9% and 45.7
± 2.6%, respectively, whereas with RB-043 the inhibition
of SK1 and SK2 was 49.9 ± 6.2% and 49.7 ± 7%, respectively.
These findings indicate that RB-041 and RB-043 can inhibit SK1 and SK2 but that the sensitivity of inhibition compared
with RB-040 and RB-042 is considerably reduced.
Interestingly, the S enantiomers RB-041 and RB-043 are substrates for SK2 (see Supporting Information, Figure S1).
Figure 5
Effect of RB-040 and RB-042 on
(A) SK1
activity and (B) SK2 activity. Concentration-dependent inhibition
of SK activity by RB-040 and RB-042 using
3 μM Sph (SK1) or 10 μM Sph (SK2) and 250 μM ATP.
The results are expressed as % of control ± SD (n = 3). The control is 100% and equals activity against Sph alone. RB-040 inhibits SK1 activity with IC50 = 2.2 ±
0.22 μM and SK2 activity with IC50 = 5.2 ± 0.82
μM. RB-042 inhibits SK1 activity with IC50 = 5.3 ± 0.5 μM and SK2 activity with IC50 =
5.0 ± 1.3 μM.[7]
To
further examine the influence of the length of the alkyl substituent
on the benzene ring on SK activity, we assessed the extent of SK inhibition
afforded by pyrrolidine derivatives RB-039, RB-042, and RB-043. The ability of the compound to inhibit
SK1 is abolished in RB-039 and RB-043, which
have a methyl and a n-dodecyl group in the lipophilic
tail, respectively.An amidine or proline headgroup incorporated
into a benzamide-containing
scaffold was shown to provide potent SK1 inhibitors,[18,19] as in compound 36a (Figure 1). When we replaced the methylene linker between the aryl group and
the heterocycle with a keto group to produce the benzamide analogues RB-044–RB-050, inhibition of SK1 was effectively
abolished (Figure 3), as were the pyridine
derivatives (RB-048 and RB-051). The report
that quaternary ammonium salts are selective SK2 inhibitors[25] prompted us to prepare RB-052, RB-053, RB-060, RB-061, and RB-062, which were ineffective as SK inhibitors, although RB-053 demonstrated a moderate selectivity for SK2 (Figure 3). We also prepared aliphatic quaternary ammonium
salts (not shown) that were inactive.Effect of inhibitors on SK1 or SK2 activity.
SK1 activity was measured
using 3 μM Sph and 250 μM ATP. SK2 activity was assayed
using 10 μM Sph and 250 μM ATP (n = 3
for each compound; results are expressed as % of control ± SD).
RB series compounds were used at 50 μM. BML-258 (50 μM) inhibited SK1 activity by 74.5 ± 3.3% (n = 3). The control is 100% and equals activity against
Sph alone.Effect of RB-032 on SK1 activity. Concentration-dependent
inhibition of SK1 activity by RB-032 using 3 μM
Sph and 250 μM ATP. The results are expressed as % of control
± SD; n = 3. The control is 100% and equals
activity against Sph alone. RB-032 inhibits SK1 activity
with IC50 = 16.9 ± 1.6 μM. RB-005 inhibits SK1 activity with IC50 = 3.6 ± 0.36 μM.[7]SK inhibitors containing a central thiazole group have been
reported
(e.g., SKi and compound 82, Figure 1). 1,2,3-Triazoles are mimics of thiazoles and are
easily prepared by Cu(I)-catalyzed azide/alkyne click chemistry. In
our series of triazole analogues of RB-005 (RB-054–RB-065), we found that RB-065 was
a highly selective SK1 inhibitor, whereas the other 10 triazole analogues,
all of which lack the 4-hydroxypiperidinyl group, were inactive (Figure 3).Effect of RB-040 and RB-042 on
(A) SK1
activity and (B) SK2 activity. Concentration-dependent inhibition
of SK activity by RB-040 and RB-042 using
3 μM Sph (SK1) or 10 μM Sph (SK2) and 250 μM ATP.
The results are expressed as % of control ± SD (n = 3). The control is 100% and equals activity against Sph alone. RB-040 inhibits SK1 activity with IC50 = 2.2 ±
0.22 μM and SK2 activity with IC50 = 5.2 ± 0.82
μM. RB-042 inhibits SK1 activity with IC50 = 5.3 ± 0.5 μM and SK2 activity with IC50 =
5.0 ± 1.3 μM.[7]
Modeling the Inhibitors in the Atomic Structure
of SK1
The crystal structures of humanSK1 in a complex with
ADP and SKi
were determined recently.[26] We demonstrate
here that the chemical modifications of the highly selective SK1 inhibitor RB-005 produced SAR that can be explained using this crystal
structure. Figure 6A displays the result of
a modeling analysis of RB-005 in the active site of humanSK1; the piperidyl hydroxyl group is hydrogen-bonded to D81, and the
protonated amine of the headgroup forms a salt bridge with the carboxylate
of D178. Fluoro (RB-034) or methoxy (RB-036) containing compounds do not exhibit inhibitory activity against
SK1 (Figure 3), as these groups no longer have
hydrogen bond donating capacity, suggesting that the interaction of
the 4-hydroxypiperidinyl group of RB-005 is with a hydrogen
bond acceptor in the protein. The lack of SK1 inhibitor activity of
the azide-containing compounds (RB-029, RB-030) supports this possibility. One of the two oxygens of the carboxylate
ion of D81 is hydrogen-bonded to the backbone NH of L116, and the
other is hydrogen-bonded to the backbone NH of A115; these interactions
prevent the carboxylate of D81 from being catalytic and shift the
catalytic role to D178 (Figure 7). The latter
carboxylateoxygen also forms a hydrogen bond to the hydroxyl group
of the inhibitor. If these compounds formed hydrogen bonds with the
side chain of S168, then RB-029, RB-034,
and RB-036 could also bind to the donor/acceptor hydroxyl
group of S168 or water and therefore act as inhibitors. Since RB-029, RB-034, and RB-036 cannot
form hydrogen bonds with D81 and are not inhibitors, we propose that
the key interaction of the hydroxyl group of RB-005 (Figure 6A), RB-025 (Figure 6B), and RB-028 (Figure 6C) is with D81 and not with S168. In contrast, modeling of RB-035 (which contains a 4-keto group instead of a 4-hydroxyl
group, yet maintains inhibition of SK1) suggests that the carbonyl
group can form a hydrogen bond with the hydroxyl group of S168 and
water (see Supporting Information, Figure
S2).
Figure 6
Various modeled
poses of SK1 inhibitors in the catalytic site of
SK1: (A) RB-005, (B) RB-025, (C) RB-028, (D) RB-032, (E) RB-033, (F) RB-040, (G) RB-042, and (H) RB-065. Dotted lines
represent hydrogen bonds.
Figure 7
Schematic model of the proposed mechanism of the phosphorylation
of Sph catalyzed by SK1.
The inhibitory effect of RB-032 (Figure 6D) and its absence for RB-033 (Figure 6E) can be explained by protonation of the primary
amine. When the protonated primary amine rather than the piperidyl
group forms a salt bridge with D178, the inhibitors are pushed deeper
into the J channel, which was identified by Wang et al.[26] as the region that accommodates the alkyl chain
of Sph. Since RB-032 has a shorter alkyl chain than RB-033, it can be accommodated in the substrate pocket, whereas
the dodecyl group of RB-033 cannot fit into the channel
formed when the protonated primary amine forms a salt bridge with
D178. Therefore, RB-033, which is inactive, does not
bind to D81, D178, S168, or L268, indicating that these are key amino
acid residues required for binding SK inhibitors.The salt bridge
between the NH3+ group of RB-032 and D178 (Figure 6D) is the
only polar interaction with the protein, which might explain the lower
SK1 inhibitor activity when compared with RB-005; the
latter forms a salt bridge and hydrogen-bonds with
D81. Interestingly, the R-enantiomers RB-040 and RB-042 are equipotent inhibitors of SK1 and SK2,
while the S-enantiomers RB-041 and RB-043 are weak substrates for SK2, implying that the spatial
orientation of the hydroxyl group in RB-041 and RB-043 required for catalysis is different in SK2 compared
with SK1. The protonated amine in RB-040 (Figure 6F) and RB-042 (Figure 6G) can form a salt bridge with D178 and can also form a hydrogen
bond with the carbonyl oxygen of L268. Both inhibitors can orientate
the hydroxymethyl group of the pyrrolidine (R enantiomer)
to also form a hydrogen bond with the side chain of D81. The protonated
amino group of RB-041 and RB-043 can form
a salt bridge with D178 but, because of the orientation of the hydroxymethyl
group of the pyrrolidine (S enantiomer), cannot form
a hydrogen bond between their hydroxyl group and D81, as found in
our modeling study. Instead, the hydroxymethyl group could form a
hydrogen bond to D178. As the experimental evidence shows that RB-041 and RB-043 do not inhibit SK1, this suggests
that dynamic factors (accessing the binding site), which are not taken
into account by docking studies, prevent the binding of these compounds.RB-044–RB-050 are ineffective
inhibitors of SK1. There are three possible explanations: first, the
nitrogen in an amide cannot be protonated, thus preventing salt bridge
formation. Second, the link between nitrogen and phenyl is constrained
and planar compared with a methylene group, which prevents optimization
of the hydrogen bonding network with the hydroxyl group. Third, the
carbonyl group of the amide would be proximal to the side chain of
D178, which would result in electrostatic repulsion.The pyridinium
salts RB-052 and RB-053 and the quaternary
ammonium salts RB-060, RB-061, and RB-062 were also ineffective SK1 inhibitors. The
absence of a hydroxyl group in these compounds rules out hydrogen
bonding with D81 or D178. The triazole moiety in RB-065 forms a hydrogen bond with T196 (Figure 6H) and, furthermore, adds a kink in the chain that helps orientate
the alkyl group into the J channel, which may account for its SK1
inhibitory activity.Our modeling studies suggest that RB-005 (Figure 6A), RB-025 (Figure 6B), and RB-028 (Figure 6C) interact with D81 and not with S168. These findings
are consistent
with D81 not acting as a base, because RB-005, RB-025, or RB-028 are not substrates for SK1.
As depicted in Figure 7, modeling of Sph into
the catalytic site of SK1 suggests that S168 can form hydrogen bonds
with the NH3+ group of Sph and, via a water
molecule, with the secondary hydroxyl group of Sph. The water molecule
also hydrogen-bonds with A339, thereby linking this amino acid residue
to the secondary hydroxyl group of Sph (Figure 7). Thus, D178 functions as the deprotonating base in this model to
enable nucleophilic attack by Sph on the γ-phosphate group of
ATP, with subsequent transfer of this phosphate to Sph.Various modeled
poses of SK1 inhibitors in the catalytic site of
SK1: (A) RB-005, (B) RB-025, (C) RB-028, (D) RB-032, (E) RB-033, (F) RB-040, (G) RB-042, and (H) RB-065. Dotted lines
represent hydrogen bonds.Schematic model of the proposed mechanism of the phosphorylation
of Sph catalyzed by SK1.
Conclusion
In this study we have identified a series
of SK1-selective inhibitors
and have used molecular modeling to define their interactions with
the catalytic site of the enzyme. These studies reveal a substantial
flexibility in the catalytic site in terms of binding SK1 inhibitors.
For instance, RB-005 is proposed to interact with D81
and D178, while RB-025 appears to interact with D81 and
L268. The findings obtained from the modeling study fully account
for the SAR of the inhibitors and explain why some of these compounds
are inactive. These findings also reveal the architecture of the SK1
catalytic site and suggest a major role for D178 as the deprotonating
base that facilitates phosphorylation of Sph by ATP. In summary, the
novel information presented here should enable development of new
SK1 inhibitors with improved potency and selectivity. Similarly, resolution
of the atomic structure of SK2 (yet to be achieved) along with information
provided herein will enable better insights into the molecular basis
of the selectivity of these inhibitors for SK1 over SK2.
Experimental Section
Docking Studies
The crystal structure
of SK1 in complex
with Sph (PDB entry 3VZB) was used for docking studies. Chain A of the complex was kept along
with a single water molecule found to be tightly bound to the complex
which hydrogen-bonds to the side chain hydroxyl group of S168, the
backbone −NH of G342, and the secondary hydroxyl group of Sph
(water number 680). Hydrogen atoms were added to the protein and water
using Accelrys Discovery Studio 3.1 (Accelrys Software, San Diego,
CA), and all of the inhibitors presented in this study were docked
using GOLD 5.1 for Windows (Cambridge Crystallographic Data Centre,
Cambridge, U.K.). Default software settings were used, keeping ChemPLP
as a scoring function after redocking Sph in place in the 3VZB crystal structure
as well as the SKi inhibitor in the 3VZD PDB entry (rmsd of 1.8 and 0.2 Å,
respectively) as validation.
Synthesis. General Methods
All chemicals
were reagent
grade and used as purchased. Reactions were run under nitrogen and
were monitored by TLC using silica gel 60 F254 aluminum-backed
plates. Flash column chromatography was performed on silica gel grade
60 (230–400 mesh). THF was distilled over sodium/benzophenone
immediately prior to use. Dichloromethane was distilled over CaH2, and Et3N was distilled over KOH pellets. All
other solvents were of anhydrous quality and were used as received. 1H NMR and 13C NMR spectra were recorded on a Bruker
Avance I spectrometer, and chemical shifts are reported in δ
units relative to deuterated solvents, which served as internal references,
at 400 and 100 MHz, respectively. High-resolution mass spectra were
recorded at the CUNY Mass Spectrometry Facility on an Agilent Technologies
G6520A Q-TOF mass spectrometer using electrospray ionization (ESI).
Microwave reactions were performed in a Biotage Emrys Creator synthesizer.
HPLC was carried out using a reverse-phase column with a gradient
of acetonitrile/water from 50/50 to 90/10, with detection at 214 and
254 nm. Elemental analysis was performed at Columbia Analytical Services,
Tucson, AZ. All compounds were ≥95% pure as determined by examining
their HRMS and 1H NMR spectra.
(4-(Oct-1-ynyl)phenyl)methanol
(1)
To
a solution of 4-iodobenzyl alcohol (200 mg, 0.85 mmol), bis(triphenylphosphine)palladium
dichloride (49 mg, 0.040 mmol), and copper(I) iodide (7.6 mg, 0.04
mmol) in anhydrous triethylamine (10 mL) was added 1-octyne (283 mg,
2.56 mmol) at room temperature. After the reaction mixture was heated
at 50 °C for 12 h, saturated aqueous ammonium chloride solution
was added, and the mixture was extracted with EtOAc. The combined
solution was washed with water, brine, and dried. Flash column chromatography
with hexanes/EtOAc (5:1) as the eluent gave alkyne 1 (180
mg, 98%) as a yellow oil. 1H NMR (400 MHz, CDCl3) δ 0.90 (t, J = 6.9 Hz, 3H), 1.28–1.36
(m, 4H), 1.41–1.49 (m, 2H), 1.60 (quin, J =
7.3 Hz, 2H), 1.89 (br s, 1H), 2.40 (t, J = 7.1 Hz,
2H), 4.65 (s, 2H), 7.25 (d, J = 8.1 Hz, 2H), 7.37
(d, J = 8.1 Hz, 2H); 13C NMR (100 MHz,
CDCl3) δ 14.1, 19.4, 22.6, 28.6, 28.7, 31.4, 65.0,
80.3, 90.6, 123.4, 126.8, 131.7, 140.1; ESI-HRMS (M + H)+m/z calcd for C15H21O 217.1592, found 217.1588.
(4-Octylphenyl)methanol
(2)
Compound 1 (180 mg, 0.83 mmol)
was dissolved in EtOAc (10 mL), and
10% Pd/C (90 mg, 50 wt %) was added. The reaction mixture was hydrogenated
at room temperature for 12 h. The catalyst was removed by filtration
through a pad of Celite, which was rinsed with EtOAc. Product 2 was obtained, without purification, as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 0.87 (t, J = 6.6 Hz, 3H), 1.26–1.30 (m, 10H), 1.56–1.63
(m, 2H), 1.78 (br s, 1H), 2.59 (t, J = 7.7 Hz, 2H),
4.64 (s, 2H), 7.16 (d, J = 8.0 Hz, 2H), 7.26 (d, J = 8.0 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 29.3, 29.4, 29.5, 31.6, 31.9, 35.7, 65.3, 127.1,
128.6, 138.1, 142.6; ESI-HRMS (M + H)+m/z calcd for C15H25O 221.1905,
found 221.1887.
1-(4-Octylbenzyl)piperidin-4-ol (RB-023)
To a solution of 2 (37 mg, 0.17 mmol) and
triethylamine
(0.23 mL, 1.7 mmol) in CH2Cl2 (5 mL) at 0 °C
was added methanesulfonyl chloride (40 μL, 0.50 mmol). After
being stirred at room temperature for 3 h, the reaction mixture was
evaporated, diluted with water, and the product was extracted with
EtOAc. The extract was washed with brine, dried, and evaporated. To
a solution of the reaction mixture (0.17 mmol) in MeCN (3 mL) was
added 4-hydroxypiperidine (86 mg, 0.85 mmol). The reaction mixture
was stirred at 50 °C for 12 h and concentrated. Purification
by silica gel chromatography, eluting with CH2Cl2/MeOH (5:1), gave 35 mg (69%, two steps) of RB-023 as
a colorless oil. 1H NMR (400 MHz, CDCl3) δ
0.88 (t, J = 6.8 Hz, 3H), 1.23–1.30 (m, 10H),
1.56–1.73 (m, 4H), 1.97–2.06 (m, 2H), 2.35–2.47
(m, 2H), 2.59 (t, J = 7.7 Hz, 2H), 2.85–2.90
(m, 2H), 3.64 (s, 2H), 3.78–3.81 (m, 1H), 7.15 (d, J = 7.9 Hz, 2H), 7.27 (d, J = 8.0 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 29.3,
29.4, 29.5, 31.5, 31.9, 33.2, 35.7, 50.1, 62.2, 128.5, 129.7, 137.2,
142.8; ESI-HRMS (M + H)+m/z calcd for C20H34NO 304.2640, found 304.2637.
3-(4-Octylphenyl)prop-2-yn-1-ol (3)
Compound 3 was prepared from 1-bromo-4-n-octylbenzene
and propargyl alcohol according to a Sonogashira reaction procedure
similar to that described for 1. Yield = 82%; 1H NMR (400 MHz, CDCl3) δ 0.86 (t, J = 6.8 Hz, 3H), 1.22–1.30 (m, 10H), 1.57–1.60 (m, 2H),
2.59 (t, J = 7.7 Hz, 2H), 4.49 (s, 2H), 7.11 (d, J = 7.8 Hz, 2H), 7.34 (d, J = 7.7 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 29.2,
29.4, 31.2, 31.9, 35.9, 51.7, 85.9, 86.5, 119.6, 128.4, 131.6, 143.7;
ESI-HRMS (M + H)+m/z calcd for C17H25O 245.1905, found 245.1903.
3-(4-Octylphenyl)propan-1-ol (4)
Compound 4 was prepared from 3 by a catalytic hydrogenation
procedure similar to that described for 2. 1H NMR (400 MHz, CDCl3) δ 0.88 (t, J = 6.8 Hz, 3H), 1.24–1.30 (m, 10H), 1.59 (quin, J = 7.4 Hz, 2H), 1.88 (quin, J = 6.5 Hz, 2H), 2.56
(t, J = 7.7 Hz, 2H), 2.67 (t, J =
7.7 Hz, 2H), 3.66 (t, J = 6.4 Hz, 2H), 7.10 (s, 4H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 29.3,
29.4, 29.5, 31.6, 31.7, 31.9, 34.3, 35.6, 62.4, 128.3, 128.4, 138.9,
140.5; ESI-HRMS (M + H)+m/z calcd for C17H29O 249.2218, found 249.2210.
Compound RB-024 was prepared from 4 according
to a procedure similar to that described for RB-023.
Yield = 73%; 1H NMR (400 MHz, CDCl3) δ
0.87 (t, J = 6.8 Hz, 3H), 1.25–1.30 (m, 10H),
1.55–1.65 (m, 4H), 1.79–1.92 (m, 4H), 2.16–2.20
(m, 2H), 2.40–2.43 (m, 2H), 2.53–2.63 (m, 4H), 2.80–2.83
(m, 2H), 3.67–3.69 (m, 1H), 7.08 (s, 4H); 13C NMR
(100 MHz, CDCl3) δ 14.1, 22.7, 28.5, 29.3, 29.4,
29.5, 31.6, 31.9, 33.3, 34.0, 35.6, 50.9, 57.9, 128.2, 128.4, 138.9,
140.4; ESI-HRMS (M + H)+m/z calcd for C22H38NO 332.2953, found 332.2951.
1-(4-(4-Octylphenyl)butyl)piperidin-4-ol (RB-025)
Compound RB-025 was prepared from 4-(4-octylphenyl)butan-1-ol
(5)[22] according to a procedure
similar to that described for compound RB-023. Yield
= 67% (two steps); 1H NMR (400 MHz, CDCl3) δ
0.88 (t, J = 6.9 Hz, 3H), 1.24–1.33 (m, 10H),
1.55–1.68 (m, 4H), 1.80–1.88 (m, 4H), 2.21–2.26
(m, 2H), 2.56 (t, J = 7.8 Hz, 2H), 2.61 (t, J = 7.5 Hz, 2H), 2.71–2.89 (m, 4H), 3.11 (t, J = 9.0 Hz, 2H), 3.97–4.01 (m, 1H), 7.05 (d, J = 8.4 Hz, 2H), 7.09 (d, J = 8.4 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 28.9,
29.3, 29.4, 29.5, 31.6, 31.9, 34.9, 35.6, 57.5, 128.2, 128.5, 138.6,
140.7; ESI-HRMS (M + H)+m/z calcd for C23H40NO 346.3110, found 346.3107.
2-(4-(Hex-1-ynyl)phenyl)ethanol (6)
Compound 6 was prepared from 2-(4-bromophenyl)ethanol and 1-hexyne
according to a Sonogashira procedure similar to that described for 1. Yield = 60%; 1H NMR (400 MHz, CDCl3) δ 0.95 (t, J = 7.3 Hz, 3H), 1.43–1.52
(m, 2H), 1.55–1.62 (m, 2H), 2.40 (t, J = 7.0
Hz, 2H), 2.85 (t, J = 6.5 Hz, 2H), 3.84 (t, J = 6.5 Hz, 2H), 7.14 (d, J = 8.1 Hz, 2H),
7.34 (t, J = 8.1 Hz, 2H); 13C NMR (100
MHz, CDCl3) δ 13.7, 19.1, 22.0, 29.7, 30.9, 39.0,
63.5, 80.3, 90.2, 122.3, 128.9, 131.7, 137.9; ESI-HRMS (M + H)+m/z calcd for C14H19O 203.1436, found 203.143 33.
2-(4-(Dodec-1-ynyl)phenyl)ethanol
(7)
Compound 7 was prepared from
2-(4-bromophenyl)ethanol
and 1-decyne according to a procedure similar to that described for 1. Yield = 62%; 1H NMR (400 MHz, CDCl3) δ 0.88 (t, J = 6.8 Hz, 3H), 1.23–1.30
(m, 12H), 1.40–1.45 (m, 2H), 1.59 (quin, J = 7.3 Hz, 2H), 2.38 (t, J = 7.1 Hz, 2H), 2.81 (t, J = 6.6 Hz, 2H), 3.79 (t, J = 6.5 Hz, 2H),
7.11 (d, J = 8.2 Hz, 2H), 7.32 (d, J = 8.1 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ
14.1, 19.4, 22.7, 24.9, 28.8, 29.0, 29.2, 29.4, 29.6, 31.9, 39.0,
63.4, 80.4, 90.2, 122.3, 128.6, 131.4, 138.0; ESI-HRMS (M + H)+m/z calcd for C20H31O 287.2375, found 287.2371.
2-(4-Hexylphenyl)ethanol
(8)
Compound 8 was prepared from 6 according to a procedure
similar to that described for 2. 1H NMR (400
MHz, CDCl3) δ 0.88 (t, J = 6.6 Hz,
3H), 1.22–1.37 (m, 6H), 1.55–1.63 (m, 2H), 2.57 (t, J = 7.8 Hz, 2H), 2.84 (t, J = 6.6 Hz, 2H),
3.84 (t, J = 6.5 Hz, 2H), 7.13 (s, 4H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.6, 29.0, 31.5,
31.7, 35.6, 38.8, 63.8, 128.6, 128.9, 135.5, 141.2; ESI-HRMS (M +
H)+m/z calcd for C14H23O 207.1749, found 207.1725.
2-(4-Dodecylphenyl)ethanol
(9)
Compound 9 was prepared from 7 according to a procedure
similar to that described for 2. 1H NMR (400
MHz, CDCl3) δ 0.88 (t, J = 6.8 Hz,
3H), 1.23–1.31 (m, 18H), 1.57–1.60 (m, 2H), 2.56 (t, J = 7.8 Hz, 2H), 2.81 (t, J = 6.6 Hz, 2H),
3.81 (t, J = 6.6 Hz, 2H), 7.12 (s, 4H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 29.4, 29.6,
29.7, 31.6, 31.9, 35.6, 38.8, 63.7, 128.6, 128.9, 135.5, 141.2; ESI-HRMS
(M + Na)+m/z calcd for
C20H34ONa 313.2507, found 313.2502.
1-(4-Methylphenethyl)piperidin-4-ol
(RB-026)
Compound RB-026 was prepared
from 2-(4-methylphenyl)ethanol
according to a procedure similar to that described for RB-023. Yield = 69%; 1H NMR (400 MHz, CDCl3) δ
1.69–1.77 (m, 2H), 1.99–2.04 (m, 2H), 2.31 (s, 3H),
2.48–2.52 (2H), 2.72–2.76 (m, 2H), 2.79 (s, 1H), 2.84–2.88
(m, 2H), 2.98–3.03 (m, 2H), 3.78–3.84 (m, 1H), 7.10
(s, 4H); ESI-HRMS (M + H)+m/z calcd for C14H22NO 220.1701, found 220.1699.
1-(4-Hexylphenethyl)piperidin-4-ol (RB-027)
Compound RB-027 was prepared from 8 according
to a procedure similar to that described for RB-023.
Yield = 79%; 1H NMR (400 MHz, CDCl3) δ
0.88 (t, J = 6.5 Hz, 3H), 1.26–1.36 (m, 6H),
1.58 (quin, J = 7.4 Hz, 2H), 1.75–1.80 (m,
2H), 2.08–2.13 (m, 2H), 2.56 (t, J = 7.7 Hz,
2H), 2.74–2.77 (m, 2H), 2.90–2.94 (m, 2H), 3.00–3.04
(m, 2H), 3.86–3.90 (m, 1H), 7.11 (s, 4H); 13C NMR
(100 MHz, CDCl3) δ 14.1, 22.6, 29.0, 31.5, 31.7,
35.6, 50.1, 59.9, 128.5, 128.6, 141.2; ESI-HRMS (M + H)+m/z calcd for C19H32NO 290.2484, found 290.2478.
1-(4-Dodecylphenethyl)piperidin-4-ol
(RB-028)
Compound RB-028 was prepared
from 9 according
to a procedure similar to that described for RB-023.
Yield = 75%; 1H NMR (400 MHz, CDCl3) δ
0.88 (t, J = 6.6 Hz, 3H), 1.23–1.33 (m, 18H),
1.56–1.60 (m, 2H), 1.67–1.72 (m, 2H), 1.98–2.01
(m, 2H), 2.34–2.39 (m, 2H), 2.56 (t, J = 7.4
Hz, 2H), 2.64–2.68 (m, 2H), 2.81–2.84 (m, 2H), 2.91–2.95
(m, 2H), 3.75–3.79 (m, 1H), 7.10 (s, 4H); 13C NMR
(100 MHz, CDCl3) δ 14.1, 22.7, 29.4, 29.5, 29.6,
29.7, 31.6, 31.9, 32.8, 35.6, 50.6, 60.3, 128.5, 136.7, 140.9; ESI-HRMS
(M + H)+m/z calcd for
C25H44NO 374.3423, found 374.3414.
4-Azido-1-(4-methylphenethyl)piperidine
(RB-029)
To a solution of RB-026 (115 mg, 0.52 mmol)
and triethylamine (0.73 mL, 5.24 mmol) in CH2Cl2 (5 mL) at 0 °C was added methanesulfonyl chloride (0.12 mL,
1.57 mmol). After being stirred at room temperature for 4 h, the reaction
mixture was evaporated, diluted with water, and the product was extracted
with EtOAc. The extract was washed with brine, evaporated, and dried.
To a solution of reaction mixture in 5 mL of DMF was added sodium
azide (170 mg, 2.62 mmol). The reaction mixture was stirred at 80
°C for 12 h and then concentrated. The residue was dissolved
in EtOAc, and the organic phase was evaporated and dried. Purification
by silica gel chromatography, eluting with hexane/EtOAc (1/1), gave
79 mg (62%) of RB-029 as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 1.69–1.78 (m, 2H),
1.96–1.99 (m, 2H), 2.30–2.35 (m, 2H), 2.31 (s, 3H),
2.60–2.65 (m, 2H), 2.76–2.80 (m, 2H), 2.86–2.89
(m, 2H), 3.44–3.48 (m, 1H), 7.09 (s, 4H); 13C NMR
(100 MHz, CDCl3) δ 21.0, 29.4, 30.5, 33.0, 50.9,
57.3, 60.4, 128.6, 129.2, 132.4, 135.7, 136.7; ESI-HRMS (M + H)+m/z calcd for C14H21N4 245.1766, found 245.1763.
4-Azido-1-(4-octylphenethyl)piperidine
(RB-030)
Compound RB-030 was prepared
from RB-005(7) according to
a procedure similar to
that described for RB-029. Yield = 71%; 1H
NMR (400 MHz, CDCl3) δ 0.87 (t, J = 6.8 Hz, 3H), 1.24–1.31 (m, 10H), 1.58 (quin, J = 7.2 Hz, 2H), 1.67–1.76 (m, 2H), 1.93–1.97 (m, 2H),
2.24–2.29 (m, 2H), 2.54–2.61 (m, 4H), 2.75–2.79
(m, 2H), 2.84–2.90 (m, 2H), 3.40–3.46 (m, 1H), 7.10
(s, 4H); 13C NMR (100 MHz, CDCl3) δ 14.1,
22.7, 29.3, 29.4, 29.5, 29.7, 30.3, 30.7, 31.6, 31.9, 33.2, 35.6,
51.1, 57.6, 60.5, 128.5, 137.2, 140.8; ESI-HRMS (M + H)+m/z calcd for C21H35N4 343.2862, found 343.2857.
1-(4-Methylphenethyl)piperidin-4-amine
(RB-031)
To a solution of RB-029 (30 mg, 0.12 mmol) in MeOH/CH2Cl2 (1/3, 3
mL) was added 10% Pd/C (50 wt %). The
reaction mixture was hydrogenated at room temperature for 12 h. The
catalyst was removed by filtration through a pad of Celite, which
was rinsed with MeOH/CH2Cl2 (3/1). The residue
was washed with EtOAc/hexane (1/1), evaporated, and dried. RB-031 was obtained as a white solid. 1H NMR (400 MHz, CD3OD) δ 1.82–1.90 (m, 2H), 2.17 (d, J = 10.2 Hz, 2H), 2.28 (s, 3H), 2.34 (t, J = 10.6
Hz, 2H), 2.68–2.71 (m, 2H), 2.79–2.83 (m, 2H), 3.13
(d, J = 11.2 Hz, 2H), 3.13–3.20 (m, 1H), 7.07
(s, 4H); 13C NMR (100 MHz, CDCl3) δ 21.0,
30.7, 32.4, 48.2, 51.4, 59.8, 128.6, 129.2, 135.8, 136.0; ESI-HRMS
(M + H)+m/z calcd for
C14H23N2 219.1861, found 219.1858.
To a solution of RB-028 (20 mg, 0.050 mmol)
and triethylamine (70 μL, 0.54 mmol) in CH2Cl2 (3 mL) at 0 °C was added methanesulfonyl chloride (10
μL, 0.15 mmol). After being stirred at room temperature for
4 h, the reaction mixture was evaporated, diluted with water, and
the product was extracted with EtOAc. The extract was washed with
brine, evaporated, and dried. To a solution of the reaction mixture
in 3 mL of DMF was added sodium azide (10 mg, 0.16 mmol). The reaction
mixture was stirred at 100 °C for 12 h and then concentrated.
The residue was dissolved in EtOAc, and the organic phase was evaporated
and dried. To a solution of residue in MeOH/CH2Cl2 (3/1, 3 mL) was added 10% Pd/C (50 wt %). The reaction mixture was
hydrogenated at room temperature for 12 h. The catalyst was removed
by filtration through a pad of Celite, which was rinsed with MeOH/CH2Cl2 (1/3). The residue was washed with EtOAc/hexane
(1/1), evaporated, and dried, affording RB-033 as a white
solid. 1H NMR (400 MHz, CD3OD) δ 0.89
(t, J = 6.9 Hz, 3H), 1.27–1.32 (m, 18H), 1.58–1.62
(m, 2H), 2.00–2.10 (m, 2H), 2.29 (d, J = 13.2,
2H), 2.58–2.62 (m, 2H), 3.05–3.09 (m, 2H), 3.15 (d, J = 13.6 Hz, 2H), 3.28–3.33 (m, 2H), 3.46–3.54
(m, 1H), 3.71 (d, J = 10.9 Hz, 2H), 7.17 (d, J = 7.9 Hz, 2H), 7.22 (d, J = 7.9 Hz, 2H); 13C NMR (100 MHz, CD3OD) δ 14.5, 23.8, 29.9,
30.3, 30.5, 30.6, 30.7, 30.8, 30.9, 31.3, 32.8, 33.1, 36.5, 36.9,
129.9, 130.1, 133.1, 143.1; ESI-HRMS (M + H)+m/z calcd for C25H45N2 373.3583, found 373.3576.
4-Fluoro-1-(4-octylphenethyl)piperidine
(RB-034)
To a solution of RB-005 (12 mg, 0.040 mmol)
in CH2Cl2 (3 mL) at 0 °C was added diethylaminosulfur
trifluoride (DAST, 15 μL, 0.12 mmol). After being stirred at
room temperature for 5 h, the reaction mixture was diluted with water,
and the product was extracted with EtOAc. The extract was washed with
brine, evaporated, and dried. Purification by silica gel chromatography,
eluting with CH2Cl2/MeOH (10:1), gave 11 mg
(90%) of RB-034 as a colorless oil. 1H NMR
(400 MHz, CDCl3) δ 0.87 (t, J =
6.8 Hz, 3H), 1.25–1.30 (m, 10H), 1.54–1.62 (m, 2H),
1.90–2.00 (m, 4H), 2.48–2.63 (m, 6H), 2.66–2.71
(m, 2H), 2.76–2.80 (m, 2H), 4.61–4.66 (m, 0.5H), 4.74–4.78
(m, 0.5H), 7.10 (s, 4H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 29.3, 29.4, 29.5, 29.7, 33.2, 35.6, 49.4, 60.5,
128.5, 137.2, 140.8; ESI-HRMS (M + H)+m/z calcd for C21H35FN 320.2754,
found 320.2751.
1-(4-Octylphenethyl)piperidin-4-one (RB-035)
To a solution of RB-005 (25
mg, 0.080 mmol) in CH2Cl2 (3 mL) at 0 °C
was added pyridinium chlorochromate
(PCC, 25 mg, 0.12 mmol). After being stirred at room temperature for
4 h, the reaction mixture was diluted with water, and the product
was extracted with EtOAc. The extract was washed with brine, evaporated,
and dried. Purification by silica gel chromatography, eluting with
CH2Cl2/MeOH (3:1), gave 17 mg (70%) of RB-035 as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 0.87 (t, J = 6.6 Hz, 3H), 1.22–1.30
(m, 10H), 1.58–1.60 (m, 2H), 2.47–2.52 (m, 4H), 2.57
(t, J = 7.7 Hz, 2H), 2.72–2.74 (m, 2H), 2.81–2.86
(m, 6H), 7.12 (s, 4H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 29.3, 29.4, 29.5, 29.7, 31.6, 31.9, 33.7, 35.6,
36.0, 41.2, 53.1, 59.4, 128.6, 137.0, 141.0, 178.0; ESI-HRMS (M +
H)+m/z calcd for C21H34 NO 316.2640, found 316.2635.
4-Methoxy-1-(4-octylphenethyl)piperidine
(RB-036)
To a solution of 11(7) (17 mg, 0.050 mmol) in MeCN (3 mL) was added
4-methoxypiperidine
(19 mg, 0.16 mmol). The reaction mixture was stirred at 50 °C
for 12 h. The solvent was evaporated and the residue was purified
by silica gel chromatography, eluting with CH2Cl2/MeOH (5:1), to give 14 mg (79%) of RB-036 as a yellow
liquid. 1H NMR (400 MHz, CDCl3) δ 0.87
(t, J = 6.5 Hz, 3H), 1.23–1.31 (m, 10H), 1.56–1.61
(m, 2H), 1.67–1.72 (m, 2H), 1.95–2.00 (m, 2H), 2.30–2.37
(m, 2H), 2.56 (t, J = 7.7 Hz, 2H), 2.62–2.64
(m, 2H), 2.79–2.85 (m, 4H), 3.25–3.30 (m, 1H), 3.34
(s, 3H), 7.10 (s, 4H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 29.3, 29.4, 29.5, 31.6, 31.9, 35.6, 50.8, 55.6,
60.5, 128.5, 128.6, 140.8; ESI-HRMS (M + H)+m/z calcd for C22H38NO 332.2953,
found 332.2948.
(S)-1-(4-Octylphenethyl)pyrrolidin-3-ol
(RB-037)
To a solution of 11 (20
mg,
0.064 mmol) in MeCN (4 mL) was added K2CO3 (44
mg, 0.32 mmol) at room temperature. After the suspension was stirred
for 10 min, (S)-pyrrolidine-3-ol hydrochloride (79
mg, 0.64 mmol) was added. The reaction mixture was stirred at 50 °C
for 12 h. The reaction mixture was diluted with water, and the product
was extracted with EtOAc. The extract was washed with brine, dried,
and evaporated. Purification by silica gel chromatography, eluting
with CH2Cl2/MeOH (3:1), gave 17 mg (86%) of RB-037 as a yellow liquid. 1H NMR (400 MHz, CDCl3) δ 0.88 (t, J = 6.8 Hz, 3H), 1.22–1.32
(m, 10H), 1.58 (quin, J = 7.3 Hz, 2H), 1.85 (quin, J = 6.7 Hz, 1H), 2.19–2.28 (m, 1H), 2.46–2.54
(m, 2H), 2.56 (t, J = 7.8 Hz, 2H), 2.68 (dd, J = 5.1, 10.4 Hz, 1H), 2.78–2.88 (m, 4H), 2.91 (d, J = 10.4 Hz, 1H), 3.07–3.13 (m, 1H), 4.38–4.41
(m, 1H), 7.12 (s, 4H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 29.3, 29.4, 29.5, 31.6, 31.9, 34.3, 34.7, 35.6,
52.6, 57.8, 62.9, 71.1, 128.5, 128.6, 136.5, 141.0; ESI-HRMS (M +
H)+m/z calcd for C20H34NO 304.2640, found 304.2639.
(R)-1-(4-Octylphenethyl)pyrrolidin-3-ol (RB-038)
Compound RB-038 was prepared
from 11 according to a coupling procedure similar to
that described for RB-036, using (R)-pyrrolidine.
Yield = 72%; 1H NMR (400 MHz, CDCl3) δ
0.88 (t, J = 6.7 Hz, 3H), 1.26–1.29 (m, 10H),
1.56–1.59 (m, 2H), 1.94–2.01 (m, 1H), 2.22–2.31
(m, 1H), 2.56 (t, J = 7.9 Hz, 2H), 2.74–2.76
(m, 1H), 2.91–2.99 (m, 4H), 3.14–3.24 (m, 2H), 3.30–3.35
(m, 1H), 4.47–4.50 (m, 1H), 7.12 (s, 4H); 13C NMR
(100 MHz, CDCl3) δ 14.1, 22.6, 29.3, 29.4, 29.5,
31.5, 31.9, 33.4, 34.2, 35.6, 52.9, 57.9, 62.7, 70.4, 128.5, 128.7,
135.2, 141.5; ESI-HRMS (M + H)+m/z calcd for C20H34NO 304.2640, found
304.2637.
Compound RB-043 was prepared
from 9 according to a coupling procedure similar to that
described for RB-037, using l-prolinol. Yield
= 55%; 1H NMR (400 MHz, CDCl3) δ 0.88
(t, J = 6.6 Hz, 3H), 1.23–1.30 (m, 18H), 1.56–1.62
(m, 2H), 1.93–2.11 (m, 4H), 2.56 (t, J = 7.8
Hz, 2H), 2.98–3.06 (m, 2H), 3.14–3.22 (m, 1H), 3.28–3.32
(m, 1H), 3.41–3.49 (m, 1H), 3.65–3.68 (m, 1H), 3.71–3.73
(m, 1H), 3.79–3.83 (m, 1H), 3.89 (dd, J =
2.5, 12.0 Hz, 1H), 7.12 (s, 4H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 23.9, 26.8, 29.4, 29.5, 29.6, 29.7,
31.5, 31.9, 35.6, 54.5, 57.5, 61.1, 70.1, 128.5, 128.8, 134.1, 141.7;
ESI-HRMS (M + H)+m/z calcd for C25H44NO 374.3423, found 374.3415.
4-(Oct-1-ynyl)benzoic Acid (12)
To a deaerated
solution of 4-iodobenzoic acid (500 mg, 2.02 mmol), bis(triphenylphosphine)palladium
dichloride (116 mg, 0.10 mmol), and copper(I) iodide (19 mg, 0.10
mmol) in anhydrous triethylamine (15 mL) was added 1-octyne (0.89
mL, 6.05 mmol) at room temperature. The reaction mixture was heated
at 60 °C for 12 h. After saturated aqueous ammonium chloride
solution was added, the product was extracted with EtOAc. The combined
solution was washed with water, brine, and dried. Purification by
silica gel chromatography, eluting with hexane/EtOAc (3:1), gave 395
mg (85%) of alkyne 12 as a yellow liquid. 1H NMR (400 MHz, CDCl3) δ 0.90 (t, J = 6.7 Hz, 3H), 1.31–1.35 (m, 4H), 1.43–1.50 (m, 2H),
1.58–1.66 (m, 2H), 2.43 (t, J = 7.1 Hz, 2H),
7.47 (d, J = 8.4 Hz, 2H), 8.02 (d, J = 8.4 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ
13.8, 19.3, 22.3, 28.3, 31.1, 79.8, 94.4, 127.6, 129.6, 129.7, 131.3,
171.8; ESI-HRMS (M – H)−m/z calcd for C15H17O2– 229.1234, found 229.1237.
4-Octylbenzoic
Acid (13)
Compound 12 (300 mg,
1.30 mmol) was dissolved in EtOAc (10 mL), and
10% Pd/C (150 mg, 50 wt %) was added. The reaction mixture was hydrogenated
at room temperature for 12 h. The catalyst was removed by filtration
through a pad of Celite, which was rinsed with EtOAc, affording 13 as a yellow solid without purification. 1H NMR
(400 MHz, CDCl3) δ 0.88 (t, J =
6.8 Hz, 3H), 1.22–1.32 (m, 10H), 1.61–1.64 (m, 2H),
2.64 (t, J = 7.7 Hz, 2H), 7.25 (d, J = 8.1 Hz, 2H), 8.02 (d, J = 8.2 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 29.3, 29.4,
31.1, 31.9, 36.1, 126.9, 128.6, 130.3, 149.6, 172.6; ESI-HRMS (M–H)−m/z calcd for C15H21O2– 233.1547,
found 233.1548.
To a solution of 4-(n-dodecyl)benzoic acid (10 mg, 0.034 mmol) in CH2Cl2 (3 mL) was added thionyl chloride (0.25 mL, 0.34 mmol) at
room temperature. The reaction mixture was heated at reflux for 12
h. The reaction mixture was diluted with water, and the product was
extracted with EtOAc. The extract was washed with brine, dried, and
evaporated. To a solution of residue in MeCN (3 mL) was added K2CO3 (24 mg, 0.17 mmol) at room temperature. After
the suspension was stirred for 10 min, d-prolinol (10 mg,
0.10 mmol) was added. The reaction mixture was stirred at 50 °C
for 12 h. The reaction mixture was diluted with water, and the product
was extracted with EtOAc. The extract was washed with brine, dried,
and evaporated. Purification by silica gel chromatography, eluting
with CH2Cl2/MeOH (10:1), gave 9 mg (72%) of RB-044 as a yellow liquid. 1H NMR (400 MHz, CDCl3) δ 0.88 (t, J = 6.6 Hz, 3H), 1.23–1.34
(m, 18H), 1.59–1.64 (m, 4H), 1.70–1.77 (m, 1H), 1.84–1.89
(m, 1H), 2.14–2.21 (m, 1H), 2.62 (t, J = 7.6
Hz, 2H), 3.46–3.59 (m, 2H), 3.71–3.82 (m, 2H), 4.39–4.44
(m, 1H), 7.20 (d, J = 7.9 Hz, 2H), 7.43 (d, J = 7.9 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ 14.1, 22.7, 25.1, 28.6, 29.2, 29.3, 29.4, 29.5, 29.6, 29.7,
31.3, 31.9, 35.8, 51.3, 61.6, 67.6, 127.2, 128.3, 133.8, 145.5, 172.5;
ESI-HRMS (M + H)+m/z calcd for C24H40NO2 374.3059, found
374.3055.
Compound RB-050 was prepared
from 4-(n-dodecyl)benzoic acid according to a coupling
procedure similar to that described for RB-044, using
2-(4-aminophenyl)ethanol. Yield = 73%; 1H NMR (400 MHz,
CDCl3) δ 0.88 (t, J = 6.8 Hz, 3H),
1.24–1.32 (m, 10H), 1.51–1.60 (m, 2H), 2.67 (t, J = 7.7 Hz, 2H), 2.87 (t, J = 6.5 Hz, 2H),
3.86 (t, J = 6.5 Hz, 2H), 7.23 (d, J = 8.4 Hz, 2H), 7.29 (d, J = 8.1 Hz, 2H), 7.58 (d, J = 8.4 Hz, 2H), 7.76 (br s, NH), 7.78 (d, J = 8.1 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ
14.1, 22.7, 27.3, 29.2, 29.4, 29.7, 31.2, 31.9, 38.6, 63.7, 120.5,
127.0, 128.9, 129.7, 132.3, 134.6, 136.5, 147.4, 165.7; ESI-HRMS (M
+ Na)+m/z calcd for
C23H31NO2Na 376.2247, found 376.2251.
1-Bromo-4-(oct-1-ynyl)benzene (14)
Compound 14 was prepared from 1-bromo-4-iodobenzene according to a
procedure similar to that described for 1. Yield = 70%; 1H NMR (400 MHz, CDCl3) δ 0.90 (t, J = 7.1 Hz, 3H), 1.29–1.34 (m, 4H), 1.40–1.47
(m, 2H), 1.59 (quin, J = 7.3 Hz, 2H), 2.37 (t, J = 7.1 Hz, 2H), 7.24 (dt, J = 8.3, 2.0
Hz, 2H), 7.39 (dt, J = 8.6, 2.0 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ 14.1, 19.5, 22.6, 28.8,
31.4, 79.6, 91.8, 121.5, 123.1, 131.4, 133.0; ESI-HRMS (M)+m/z calcd for C14H17Br 264.0514, found 264.0508.
4-(4-Octylphenethyl)pyridine
(RB-051)
To a deaerated solution of 14 (100 mg, 0.38 mmol), bis(triphenylphosphine)palladium
dichloride (22 mg, 0.010 mmol), and copper(I) iodide (4 mg, 10 μmol)
in anhydrous triethylamine (8 mL) was added 3-ethynylpyridine (78
mg, 0.75 mmol) at room temperature. The reaction mixture was heated
at 80 °C for 3 days. After saturated ammonium chloride solution
was added, the product was extracted with EtOAc. The combined solution
was washed with water, brine and dried. The catalyst was removed by
filtration through a pad of Celite, which was rinsed with hexanes/EtOAc
(3:1). 3-((4-(Oct-1-ynyl)phenyl)ethynyl)pyridine (15) (53 mg, 0.18 mmol) was dissolved in EtOAc (8 mL), and 10% Pd/C
(53 mg, 100 wt %) was added. The reaction mixture was hydrogenated
at room temperature for 12 h. The catalyst was removed by filtration
through a pad of Celite, which was rinsed with EtOAc. Flash column
chromatography with hexanes/EtOAc (1:1) as eluent gave RB-051 (48 mg, 88%) as a yellow oil. 1H NMR (400 MHz, CDCl3) δ 0.88 (t, J = 6.8 Hz, 3H), 1.27–1.34
(m, 10H), 1.59 (quin, J = 7.3 Hz, 2H), 2.56 (t, J = 7.8 Hz, 2H), 2.86–2.92 (m, 4H), 7.05 (d, J = 8.1 Hz, 2H), 7.09 (d, J = 8.1 Hz, 2H),
7.17 (dd, J = 4.8, 7.7 Hz, 1H), 7.43 (dt, J = 7.8, 1.8 Hz, 1H), 8.42–8.44 (m, 2H); 13C NMR (100 MHz, CDCl3) δ 14.2, 22.7, 29.3, 29.4,
29.5, 31.6, 31.9, 35.0, 35.6, 37.1, 123.2, 128.3, 128.5, 135.9, 137.0,
140.8, 147.5, 150.0; ESI-HRMS (M + H)+m/z calcd for C21H30N 296.2378,
found 296.2374.
To
a Pyrex vessel charged with a magnetic stirring bar was added a suspension
of 4-chloropyridine hydrochloride (0.20 g, 1.3 mmol) in dry acetonitrile
(4 mL). N,N-Diisopropylethylamine
(DIPEA, 0.7 mL, 4.0 mmol) was added, followed by 4-methylpiperidine
(0.16 mL, 1.3 mmol). The reactor was placed in a microwave apparatus
and irradiated at 160 °C for 1 h. After the reaction mixture
was cooled to room temperature, EtOAc was added, and the solution
was washed with water and brine, dried (Na2SO4), and concentrated in vacuo. Ether (3 mL) was added to the resulting
crude oil, and the inorganic precipitate was removed by filtration.
Evaporation of the solvent gave 4-(4-methylpiperidin-1-yl)pyridine
(17). A solution of 16 (100 mg, 0.35 mmol)
and 17 (124 mg, 0.71 mmol) in 5 mL of 2-butanone was
placed in a sealed tube. The reaction mixture was stirred at 100 °C
for 3 days and concentrated. The residue was washed with EtOAc to
give 125 mg (78%) of 18 as a slightly yellow solid. 1H NMR (400 MHz, CDCl3) δ 0.90 (t, J = 6.9 Hz, 3H), 0.98 (d, J = 6.4 Hz, 3H),
1.15–1.32 (m, 6H), 1.40–1.47 (m, 2H), 1.59 (quin, J = 7.28 Hz, 2H), 1.74–1.79 (m, 1H), 1.84 (d, J = 13.2 Hz, 2H), 2.39 (t, J = 7.1 Hz,
2H), 3.12 (td, J = 12.9, 2.1 Hz, 2H), 4.04 (d, J = 13.4 Hz, 2H), 5.60 (s, 2H), 6.95 (d, J = 7.1 Hz, 2H), 7.36 (d, J = 8.1 Hz, 2H), 7.43 (d, J = 8.1 Hz, 2H), 8.56 (d, J = 7.1 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ 14.2, 19.4, 21.3,
22.6, 28.6, 29.7, 30.5, 31.3, 33.5, 47.4, 60.3, 79.8, 92.2, 108.4,
125.3, 128.9, 132.4, 133.1, 143.0, 155.2; ESI-HRMS (M + H)+m/z calcd for C26H36N2+ 376.2873, found 376.2871.
To a solution
of 19 (157 mg, 0.78 mmol) in 2 mL of 10% aqueous HCl
was added NaNO2 (65 mg, 0.94 mmol) in 1 mL of water at
0 °C. After the solution was stirred for 30 min, NaN3 (61 mg, 0.94 mmol) in 1 mL of water was added at 0 °C, with
stirring for another hour. The reaction mixture was warmed to 25 °C,
diluted with EtOAc, washed with water and brine, dried (Na2SO4), and concentrated in vacuo, affording 20. Without purification, 20 (43 mg, 0.19 mmol) and 3-ethynylpyridine
(39 mg, 0.38 mmol) were dissolved in t-BuOH/H2O (3 mL, 1:1), and CuSO4 (30 mg, 0.19 mmol) and
sodium ascorbate (37 mg, 0.19 mmol) were added at room temperature.
The reaction mixture was stirred for 2 days and then was diluted with
EtOAc and washed with brine. The aqueous layer was extracted with
EtOAc. The combined organic layers were dried (MgSO4) and
concentrated in vacuo. Purification by silica gel chromatography,
eluting with hexanes/EtOAc (1:1), gave 50 mg (67%, two steps) of 21 as a white solid. 1H NMR (400 MHz, CDCl3) δ 0.92 (t, J = 6.9 Hz, 3H), 1.29–1.38
(m, 4H), 1.47 (quin, J = 7.3 Hz, 2H), 1.63 (quin, J = 7.3 Hz, 2H), 2.44 (t, J = 7.1 Hz, 2H),
7.41 (dd, J = 4.8, 7.9 Hz, 1H), 7.57 (d, J = 8.6 Hz, 2H), 7.74 (d, J = 8.6 Hz, 2H),
8.27–8.30 (m, 2H), 8.61–8.63 (m, 1H), 9.08 (s, 1H); 13C NMR (100 MHz, CDCl3) δ 14.1, 19.5, 22.6,
28.5, 28.6, 31.4, 79.3, 93.0, 117.8, 120.2, 123.1, 123.9, 125.2, 126.4,
133.0, 133.3, 135.6, 139.5, 145.4, 147.1, 149.6, 153.2, ESI-HRMS (M
+ H)+m/z calcd for C21H23N4 331.1923, found 331.1919.
Compound RB-054 was prepared
from 21 according to a procedure similar to that described
for 2. Yield = 82%; 1H NMR (400 MHz, CDCl3) δ 0.89 (t, J = 6.8 Hz, 3H), 1.25–1.35
(m, 10H), 1.62–1.68 (m, 2H), 2.69 (t, J =
7.7 Hz, 2H), 7.36 (d, J = 8.3 Hz, 2H), 7.42 (dd, J = 4.8, 7.8 Hz, 1H), 7.69 (d, J = 8.3
Hz, 2H), 8.25 (s, 1H), 8.30 (d, J = 7.9 Hz, 1H),
8.61–8.63 (m, 1H), 9.08 (s, 1H); 13C NMR (100 MHz,
CDCl3) δ 14.1, 22.7, 29.2, 29.3, 29.4, 29.7, 31.4,
31.9, 35.5, 118.1, 120.6, 123.9, 126.6, 129.8, 133.2, 134.7, 144.4,
145.2, 147.1, 149.4; ESI-HRMS (M + H)+m/z calcd for C21H27N4 335.2236, found 335.2232.
4-(4-Octyl-1H-1,2,3-triazol-1-yl)phenol (RB-055)
To a solution
of 4-aminophenol (100 mg, 0.92
mmol) in 2 mL of 10% aqueous HCl was added NaNO2 (76 mg,
1.10 mmol) in 1 mL of water at 0 °C. After the solution was stirred
for 30 min, NaN3 (72 mg, 1.10 mmol) in 1 mL of water was
added at 0 °C, with stirring for another hour. The reaction mixture
was warmed to 25 °C, diluted with EtOAc, washed with water and
brine, dried (Na2SO4), and concentrated in vacuo,
affording 4-azidophenol (22). Without purification, 22 (20 mg, 0.15 mmol) and 1-decyne (61 mg, 0.44 mmol) were
dissolved in t-BuOH/H2O (5 mL, 1:1), and
CuSO4 (35 mg, 0.22 mmol) and sodium ascorbate (44 mg, 0.22
mmol) were added at room temperature. The reaction mixture was stirred
for 2 days and then was diluted with EtOAc and washed with brine.
The aqueous layer was extracted with EtOAc. The combined organic layers
were dried (MgSO4) and concentrated in vacuo. Purification
by silica gel chromatography, eluting with CH2Cl2/MeOH (10:1), gave 26 mg (70%, two steps) of RB-055 as
a white solid. 1H NMR (400 MHz, CDCl3) δ
0.86 (t, J = 6.7 Hz, 3H), 1.23–1.38 (m, 10H),
1.72 (t, J = 8.6 Hz, 2H), 2.79 (t, J = 8.5 Hz, 2H), 7.11 (d, J = 7.6 Hz, 2H), 7.54 (d, J = 7.6 Hz, 2H), 7.68 (s, 1H); 13C NMR (100 MHz,
CDCl3) δ 14.1, 22.6, 25.5, 29.2, 29.3, 29.4, 31.8,
116.7, 119.6, 122.3, 129.7, 148.8, 157.7; ESI-HRMS (M + H)+m/z calcd for C16H24N3O 274.1914, found 274.1918.
To a solution of 23(26) (200 mg, 1.23 mmol) and 1-hexyne
(0.42 mL, 3.68 mmol) in tert-BuOH/H2O
(6 mL, 1:1) were added CuSO4 (196 mg, 1.23 mmol) and sodium
ascorbate (243 mg, 1.23 mmol). The reaction mixture was stirred at
room temperature for 12 h and then was diluted with EtOAc and washed
with brine. The aqueous layer was extracted with EtOAc. The combined
organic layers were dried (MgSO4) and concentrated in vacuo.
Compound 24 was obtained, without purification, as a
yellow liquid. To a solution of 24 (1.23 mmol) and triethylamine
(0.86 mL, 6.15 mmol) in CH2Cl2 (10 mL) at 0
°C was added methanesulfonyl chloride (0.29 mL, 3.69 mmol). After
being stirred at room temperature for 5 h, the reaction mixture was
evaporated, diluted with water, and the product was extracted with
EtOAc. The extract was washed with brine, dried, and evaporated. Purification
by silica gel chromatography, eluting with hexanes/EtOAc (1:2), gave
253 mg (66%, two steps) of 26 as a white solid. 1H NMR (400 MHz, CDCl3) δ 0.96 (t, J = 7.3 Hz, 3H), 1.43 (sex, J = 7.5 Hz,
2H), 1.72 (quin, J = 7.6 Hz, 2H), 2.80 (t, J = 7.7 Hz, 2H), 2.92 (s, 3H), 3.12 (t, J = 6.7 Hz, 2H), 4.45 (t, J = 6.7 Hz, 2H), 7.38 (d, J = 8.5 Hz, 2H), 7.69 (d, J = 8.5 Hz, 2H),
7.73 (s, 1H); 13C NMR (100 MHz, CDCl3) δ
13.9, 22.3, 25.3, 31.5, 31.6, 35.1, 37.4, 69.7, 118.8, 120.6, 130.3,
136.3, 136.9, 149.2; ESI-HRMS (M + H)+m/z calcd for C15H22N3O3S 324.1382, found 324.1382.
To a solution of RB-056 (50 mg, 0.17 mmol) and triethylamine (116 μL, 0.83 mmol) in
CH2Cl2 (5 mL) at 0 °C was added methanesulfonyl
chloride (39 μL, 0.51 mmol). After being stirred at room temperature
for 5 h, the reaction mixture was evaporated, diluted with water,
and the product was extracted with EtOAc. The extract was washed with
brine, dried, and evaporated to afford 28 as a yellow
liquid. To a solution of 65 mg (0.17 mmol) of 28 (without
purification) in 3 mL of acetonitrile was added piperidine (168 μL,
1.70 mmol). The reaction mixture was stirred at 50 °C for 12
h and concentrated. Purification by silica gel chromatography, eluting
with CH2Cl2/MeOH (5:1), gave 11 mg (66%) of RB-059 as a slightly yellow waxy solid. 1H NMR
(400 MHz, CDCl3) δ 0.88 (t, J =
6.8 Hz, 3H), 1.25–1.39 (m, 10H), 1.58–1.62 (m, 2H),
1.72 (quin, J = 7.3 Hz, 2H), 1.89 (quin, J = 5.1 Hz, 4H), 2.78 (t, J = 7.7 Hz, 2H),
2.96–3.04 (m, 6H), 3.14–3.18 (m, 2H), 7.40 (d, J = 8.1 Hz, 2H), 7.64 (d, J = 8.1 Hz, 2H),
7.67 (s, 1H); 13C NMR (100 MHz, CDCl3) δ
14.0, 22.6, 22.8, 23.9, 25.6, 29.1, 29.2, 29.3, 30.9, 31.8, 53.8,
59.1, 118.9, 120.6, 130.0, 135.8, 138.5, 149.1, 173.3; ESI-HRMS (M
+ H)+m/z calcd for C23H37N4 369.3013, found 369.3015; (M
+ H–N2)+m/z calcd
for C23H35N2 341.2951, found 341.2954.
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