Literature DB >> 24163002

Deep sequencing of small chromatin-associated RNA: bioinformatic analysis.

Sarah Daniela Diermeier1, Gernot Längst.   

Abstract

Chromatin-associated RNA (caRNA) is a newly identified class of RNA stably linked to chromatin and responsible for maintaining the higher order structure of euchromatic regions in an accessible form (Schubert et al., Mol Cell 48, 434 - 444, 2012). This section provides a pipeline of bioinformatic analysis for this specific type of RNA-Seq. It can be run locally by combining several scripts or be carried out on the Galaxy platform (Giardine et al., Genome Res 15:1451-1455, 2005).

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Year:  2014        PMID: 24163002     DOI: 10.1007/978-1-62703-706-8_28

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  1 in total

Review 1.  Use of RNA sequencing to evaluate rheumatic disease patients.

Authors:  Eugenia G Giannopoulou; Olivier Elemento; Lionel B Ivashkiv
Journal:  Arthritis Res Ther       Date:  2015-07-01       Impact factor: 5.156

  1 in total

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