Literature DB >> 24158981

A bioinformatics approach identifies signal transducer and activator of transcription-3 and checkpoint kinase 1 as upstream regulators of kidney injury molecule-1 after kidney injury.

Amrendra Kumar Ajay1, Tae-Min Kim, Victoria Ramirez-Gonzalez, Peter J Park, David A Frank, Vishal S Vaidya.   

Abstract

Kidney injury molecule-1 (KIM-1)/T cell Ig and mucin domain-containing protein-1 (TIM-1) is upregulated more than other proteins after AKI, and it is highly expressed in renal damage of various etiologies. In this capacity, KIM-1/TIM-1 acts as a phosphatidylserine receptor on the surface of injured proximal tubular epithelial cells, mediating phagocytosis of apoptotic cells, and it may also act as a costimulatory molecule for immune cells. Despite recognition of KIM-1 as an important therapeutic target for kidney disease, the regulators of KIM-1 transcription in the kidney remain unknown. Using a bioinformatics approach, we identified upstream regulators of KIM-1 after AKI. In response to tubular injury in rat and human kidneys or oxidant stress in human proximal tubular epithelial cells (HPTECs), KIM-1 expression increased significantly in a manner that corresponded temporally and regionally with increased phosphorylation of checkpoint kinase 1 (Chk1) and STAT3. Both ischemic and oxidant stress resulted in a dramatic increase in reactive oxygen species that phosphorylated and activated Chk1, which subsequently bound to STAT3, phosphorylating it at S727. Furthermore, STAT3 bound to the KIM-1 promoter after ischemic and oxidant stress, and pharmacological or genetic induction of STAT3 in HPTECs increased KIM-1 mRNA and protein levels. Conversely, inhibition of STAT3 using siRNAs or dominant negative mutants reduced KIM-1 expression in a kidney cancer cell line (769-P) that expresses high basal levels of KIM-1. These observations highlight Chk1 and STAT3 as critical upstream regulators of KIM-1 expression after AKI and may suggest novel approaches for therapeutic intervention.

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Year:  2013        PMID: 24158981      PMCID: PMC3871775          DOI: 10.1681/ASN.2013020161

Source DB:  PubMed          Journal:  J Am Soc Nephrol        ISSN: 1046-6673            Impact factor:   10.121


  50 in total

1.  ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments.

Authors:  Alexander Lachmann; Huilei Xu; Jayanth Krishnan; Seth I Berger; Amin R Mazloom; Avi Ma'ayan
Journal:  Bioinformatics       Date:  2010-08-13       Impact factor: 6.937

2.  Blockade of Janus kinase-2 signaling ameliorates mouse liver damage due to ischemia and reperfusion.

Authors:  Maria Cecilia S Freitas; Yoichiro Uchida; Danyun Zhao; Bibo Ke; Ronald W Busuttil; Jerzy W Kupiec-Weglinski
Journal:  Liver Transpl       Date:  2010-05       Impact factor: 5.799

3.  TIM-1 induces T cell activation and inhibits the development of peripheral tolerance.

Authors:  Sarah E Umetsu; Wan-Ling Lee; Jennifer J McIntire; Laura Downey; Bharati Sanjanwala; Omid Akbari; Gerald J Berry; Haruo Nagumo; Gordon J Freeman; Dale T Umetsu; Rosemarie H DeKruyff
Journal:  Nat Immunol       Date:  2005-03-27       Impact factor: 25.606

4.  Kidney injury molecule-1 (KIM-1), a putative epithelial cell adhesion molecule containing a novel immunoglobulin domain, is up-regulated in renal cells after injury.

Authors:  T Ichimura; J V Bonventre; V Bailly; H Wei; C A Hession; R L Cate; M Sanicola
Journal:  J Biol Chem       Date:  1998-02-13       Impact factor: 5.157

5.  Regression of microalbuminuria in type 1 diabetes is associated with lower levels of urinary tubular injury biomarkers, kidney injury molecule-1, and N-acetyl-β-D-glucosaminidase.

Authors:  Vishal S Vaidya; Monika A Niewczas; Linda H Ficociello; Amanda C Johnson; Fitz B Collings; James H Warram; Andrzej S Krolewski; Joseph V Bonventre
Journal:  Kidney Int       Date:  2010-10-27       Impact factor: 10.612

6.  Hepatocyte-specific mutation of both NF-κB RelA and STAT3 abrogates the acute phase response in mice.

Authors:  Lee J Quinton; Matthew T Blahna; Matthew R Jones; Eri Allen; Joseph D Ferrari; Kristie L Hilliard; Xiaoling Zhang; Vishakha Sabharwal; Hana Algül; Shizuo Akira; Roland M Schmid; Stephen I Pelton; Avrum Spira; Joseph P Mizgerd
Journal:  J Clin Invest       Date:  2012-04-02       Impact factor: 14.808

Review 7.  The emerging role of the TIM molecules in transplantation.

Authors:  M Y Yeung; M McGrath; N Najafian
Journal:  Am J Transplant       Date:  2011-09-11       Impact factor: 8.086

8.  Kidney injury molecule-1 outperforms traditional biomarkers of kidney injury in preclinical biomarker qualification studies.

Authors:  Vishal S Vaidya; Josef S Ozer; Frank Dieterle; Fitz B Collings; Victoria Ramirez; Sean Troth; Nagaraja Muniappa; Douglas Thudium; David Gerhold; Daniel J Holder; Norma A Bobadilla; Estelle Marrer; Elias Perentes; André Cordier; Jacky Vonderscher; Gérard Maurer; Peter L Goering; Frank D Sistare; Joseph V Bonventre
Journal:  Nat Biotechnol       Date:  2010-05       Impact factor: 54.908

9.  The emerging role of T cell Ig mucin 1 in alloimmune responses in an experimental mouse transplant model.

Authors:  Takuya Ueno; Antje Habicht; Michael R Clarkson; Monica J Albin; Kazuhiro Yamaura; Olaf Boenisch; Joyce Popoola; Ying Wang; Hideo Yagita; Hisaya Akiba; M Javeed Ansari; Jaeseok Yang; Laurence A Turka; David M Rothstein; Robert F Padera; Nader Najafian; Mohamed H Sayegh
Journal:  J Clin Invest       Date:  2008-02       Impact factor: 14.808

Review 10.  Targeting DNA repair mechanisms in cancer.

Authors:  John M Furgason; El Mustapha Bahassi
Journal:  Pharmacol Ther       Date:  2012-10-27       Impact factor: 12.310

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  30 in total

1.  IL-34-Dependent Intrarenal and Systemic Mechanisms Promote Lupus Nephritis in MRL-Faslpr Mice.

Authors:  Yukihiro Wada; Hilda M Gonzalez-Sanchez; Julia Weinmann-Menke; Yasunori Iwata; Amrendra K Ajay; Myriam Meineck; Vicki R Kelley
Journal:  J Am Soc Nephrol       Date:  2019-01-08       Impact factor: 10.121

Review 2.  Targeting STAT3 signaling in kidney disease.

Authors:  Jesse Pace; Praharshasai Paladugu; Bhaskar Das; John C He; Sandeep K Mallipattu
Journal:  Am J Physiol Renal Physiol       Date:  2019-04-03

3.  Targeting Phospholipase D4 Attenuates Kidney Fibrosis.

Authors:  Priyanka Trivedi; Ramya K Kumar; Ashwin Iyer; Sarah Boswell; Casimiro Gerarduzzi; Vivekkumar P Dadhania; Zach Herbert; Nikita Joshi; James P Luyendyk; Benjamin D Humphreys; Vishal S Vaidya
Journal:  J Am Soc Nephrol       Date:  2017-08-16       Impact factor: 10.121

4.  G protein α12 (Gα12) is a negative regulator of kidney injury molecule-1-mediated efferocytosis.

Authors:  Ola Z Ismail; Xizhong Zhang; Joseph V Bonventre; Lakshman Gunaratnam
Journal:  Am J Physiol Renal Physiol       Date:  2015-12-23

5.  IL-34 mediates acute kidney injury and worsens subsequent chronic kidney disease.

Authors:  Jea-Hyun Baek; Rui Zeng; Julia Weinmann-Menke; M Todd Valerius; Yukihiro Wada; Amrendra K Ajay; Marco Colonna; Vicki R Kelley
Journal:  J Clin Invest       Date:  2015-06-29       Impact factor: 14.808

6.  RIPK3 promotes sepsis-induced acute kidney injury via mitochondrial dysfunction.

Authors:  Angara Sureshbabu; Edwin Patino; Kevin C Ma; Kristian Laursen; Eli J Finkelsztein; Oleh Akchurin; Thangamani Muthukumar; Stefan W Ryter; Lorraine Gudas; Augustine M K Choi; Mary E Choi
Journal:  JCI Insight       Date:  2018-06-07

7.  Kidney injury molecule-1 identifies antemortem injury in postmortem adult and fetal kidney.

Authors:  Wenqing Yin; Ping L Zhang; Jacqueline K Macknis; Fan Lin; Joseph V Bonventre
Journal:  Am J Physiol Renal Physiol       Date:  2018-08-15

8.  RNA-binding Protein Musashi Homologue 1 Regulates Kidney Fibrosis by Translational Inhibition of p21 and Numb mRNA.

Authors:  Shreyas Jadhav; Amrendra K Ajay; Priyanka Trivedi; Jenifer Seematti; Kathryn Pellegrini; Florin Craciun; Vishal S Vaidya
Journal:  J Biol Chem       Date:  2016-04-28       Impact factor: 5.157

9.  Pharmacological and genetic depletion of fibrinogen protects from kidney fibrosis.

Authors:  Florin L Craciun; Amrendra K Ajay; Dana Hoffmann; Janani Saikumar; Steven L Fabian; Vanesa Bijol; Benjamin D Humphreys; Vishal S Vaidya
Journal:  Am J Physiol Renal Physiol       Date:  2014-07-09

10.  Extracellular Signal-Regulated Kinase 1/2 Regulates Mouse Kidney Injury Molecule-1 Expression Physiologically and Following Ischemic and Septic Renal Injury.

Authors:  Justin B Collier; Rick G Schnellmann
Journal:  J Pharmacol Exp Ther       Date:  2017-10-26       Impact factor: 4.030

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