Literature DB >> 24158479

MicroRNA 4423 is a primate-specific regulator of airway epithelial cell differentiation and lung carcinogenesis.

Catalina Perdomo1, Joshua D Campbell, Joseph Gerrein, Carmen S Tellez, Carly B Garrison, Tonya C Walser, Eduard Drizik, Huiqing Si, Adam C Gower, Jessica Vick, Christina Anderlind, George R Jackson, Courtney Mankus, Frank Schembri, Carl O'Hara, Brigitte N Gomperts, Steven M Dubinett, Patrick Hayden, Steven A Belinsky, Marc E Lenburg, Avrum Spira.   

Abstract

Smoking is a significant risk factor for lung cancer, the leading cause of cancer-related deaths worldwide. Although microRNAs are regulators of many airway gene-expression changes induced by smoking, their role in modulating changes associated with lung cancer in these cells remains unknown. Here, we use next-generation sequencing of small RNAs in the airway to identify microRNA 4423 (miR-4423) as a primate-specific microRNA associated with lung cancer and expressed primarily in mucociliary epithelium. The endogenous expression of miR-4423 increases as bronchial epithelial cells undergo differentiation into mucociliary epithelium in vitro, and its overexpression during this process causes an increase in the number of ciliated cells. Furthermore, expression of miR-4423 is reduced in most lung tumors and in cytologically normal epithelium of the mainstem bronchus of smokers with lung cancer. In addition, ectopic expression of miR-4423 in a subset of lung cancer cell lines reduces their anchorage-independent growth and significantly decreases the size of the tumors formed in a mouse xenograft model. Consistent with these phenotypes, overexpression of miR-4423 induces a differentiated-like pattern of airway epithelium gene expression and reverses the expression of many genes that are altered in lung cancer. Together, our results indicate that miR-4423 is a regulator of airway epithelium differentiation and that the abrogation of its function contributes to lung carcinogenesis.

Entities:  

Keywords:  airway epithelium development; microRNA discovery; next-generation sequencing technology; noncoding RNA; tumor suppressor

Mesh:

Substances:

Year:  2013        PMID: 24158479      PMCID: PMC3839685          DOI: 10.1073/pnas.1220319110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

1.  MicroRNA targeting specificity in mammals: determinants beyond seed pairing.

Authors:  Andrew Grimson; Kyle Kai-How Farh; Wendy K Johnston; Philip Garrett-Engele; Lee P Lim; David P Bartel
Journal:  Mol Cell       Date:  2007-07-06       Impact factor: 17.970

2.  MicroRNAs as modulators of smoking-induced gene expression changes in human airway epithelium.

Authors:  Frank Schembri; Sriram Sridhar; Catalina Perdomo; Adam M Gustafson; Xiaoling Zhang; Ayla Ergun; Jining Lu; Gang Liu; Xiaohui Zhang; Jessica Bowers; Cyrus Vaziri; Kristen Ott; Kelly Sensinger; James J Collins; Jerome S Brody; Robert Getts; Marc E Lenburg; Avrum Spira
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-23       Impact factor: 11.205

3.  The muscle-specific microRNA miR-206 blocks human rhabdomyosarcoma growth in xenotransplanted mice by promoting myogenic differentiation.

Authors:  Riccardo Taulli; Francesca Bersani; Valentina Foglizzo; Alessandra Linari; Elisa Vigna; Marc Ladanyi; Thomas Tuschl; Carola Ponzetto
Journal:  J Clin Invest       Date:  2009-07-20       Impact factor: 14.808

4.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Authors:  Ben Langmead; Cole Trapnell; Mihai Pop; Steven L Salzberg
Journal:  Genome Biol       Date:  2009-03-04       Impact factor: 13.583

5.  Discovering microRNAs from deep sequencing data using miRDeep.

Authors:  Marc R Friedländer; Wei Chen; Catherine Adamidi; Jonas Maaskola; Ralf Einspanier; Signe Knespel; Nikolaus Rajewsky
Journal:  Nat Biotechnol       Date:  2008-04       Impact factor: 54.908

6.  Transcriptional profiling of mucociliary differentiation in human airway epithelial cells.

Authors:  Andrea J Ross; Lisa A Dailey; Luisa E Brighton; Robert B Devlin
Journal:  Am J Respir Cell Mol Biol       Date:  2007-04-05       Impact factor: 6.914

7.  Effect of active smoking on the human bronchial epithelium transcriptome.

Authors:  Raj Chari; Kim M Lonergan; Raymond T Ng; Calum MacAulay; Wan L Lam; Stephen Lam
Journal:  BMC Genomics       Date:  2007-08-29       Impact factor: 3.969

8.  Smoking-induced gene expression changes in the bronchial airway are reflected in nasal and buccal epithelium.

Authors:  Sriram Sridhar; Frank Schembri; Julie Zeskind; Vishal Shah; Adam M Gustafson; Katrina Steiling; Gang Liu; Yves-Martine Dumas; Xiaohui Zhang; Jerome S Brody; Marc E Lenburg; Avrum Spira
Journal:  BMC Genomics       Date:  2008-05-30       Impact factor: 3.969

9.  Reversible and permanent effects of tobacco smoke exposure on airway epithelial gene expression.

Authors:  Jennifer Beane; Paola Sebastiani; Gang Liu; Jerome S Brody; Marc E Lenburg; Avrum Spira
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

10.  Whole genome exon arrays identify differential expression of alternatively spliced, cancer-related genes in lung cancer.

Authors:  Liqiang Xi; Andrew Feber; Vanita Gupta; Maoxin Wu; Andrew D Bergemann; Rodney J Landreneau; Virginia R Litle; Arjun Pennathur; James D Luketich; Tony E Godfrey
Journal:  Nucleic Acids Res       Date:  2008-10-16       Impact factor: 16.971

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  27 in total

1.  A primate-specific microRNA enters the lung cancer landscape.

Authors:  Ana I Robles; Curtis C Harris
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

2.  Alterations in Bronchial Airway miRNA Expression for Lung Cancer Detection.

Authors:  Ana B Pavel; Joshua D Campbell; Gang Liu; David Elashoff; Steven Dubinett; Kate Smith; Duncan Whitney; Marc E Lenburg; Avrum Spira
Journal:  Cancer Prev Res (Phila)       Date:  2017-09-06

3.  Characterization of microRNA transcriptome in lung cancer by next-generation deep sequencing.

Authors:  Jie Ma; Kaiissar Mannoor; Lu Gao; Afang Tan; Maria A Guarnera; Min Zhan; Amol Shetty; Sanford A Stass; Lingxiao Xing; Feng Jiang
Journal:  Mol Oncol       Date:  2014-04-15       Impact factor: 6.603

4.  Integrative analysis of microRNA and mRNA expression profiles in non-small-cell lung cancer.

Authors:  C Yang; C Sun; X Liang; S Xie; J Huang; D Li
Journal:  Cancer Gene Ther       Date:  2016-03-11       Impact factor: 5.987

5.  Development of Kras mutant lung adenocarcinoma in mice with knockout of the airway lineage-specific gene Gprc5a.

Authors:  Junya Fujimoto; Sayuri Nunomura-Nakamura; Yihua Liu; Wenhua Lang; Tina McDowell; Yasminka Jakubek; Dalia Ezzeddine; Joshua Kapere Ochieng; Jason Petersen; Gareth Davies; Junya Fukuoka; Ignacio I Wistuba; Erik Ehli; Jerry Fowler; Paul Scheet; Humam Kadara
Journal:  Int J Cancer       Date:  2017-07-17       Impact factor: 7.396

6.  Growth differentiation factor-15 encodes a novel microRNA 3189 that functions as a potent regulator of cell death.

Authors:  M F Jones; X Ling Li; M Subramanian; Svetlana A Shabalina; T Hara; Y Zhu; J Huang; Y Yang; L M Wakefield; K V Prasanth; A Lal
Journal:  Cell Death Differ       Date:  2015-02-20       Impact factor: 15.828

Review 7.  The roles of microRNAs and protein components of the microRNA pathway in lung development and diseases.

Authors:  Leah Cushing; Zhihua Jiang; Pingping Kuang; Jining Lü
Journal:  Am J Respir Cell Mol Biol       Date:  2015-04       Impact factor: 6.914

Review 8.  Update in Lung Cancer 2014.

Authors:  Avrum Spira; Balazs Halmos; Charles A Powell
Journal:  Am J Respir Crit Care Med       Date:  2015-08-01       Impact factor: 21.405

9.  Loss of miR125a expression in a model of K-ras-dependent pulmonary premalignancy.

Authors:  Elvira L Liclican; Tonya C Walser; Saswati Hazra; Kostyantyn Krysan; Stacy J Park; Paul C Pagano; Brian K Gardner; Jill E Larsen; John D Minna; Steven M Dubinett
Journal:  Cancer Prev Res (Phila)       Date:  2014-06-09

10.  Immune reconstitution from peripheral blood mononuclear cells inhibits lung carcinoma growth in NOD/SCID mice.

Authors:  Xiang Liu; Huiling Li; Jun Liu; Yubao Guan; Liyan Huang; Hailing Tang; Jianxing He
Journal:  Oncol Lett       Date:  2014-07-24       Impact factor: 2.967

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