Literature DB >> 24156943

HDV family of self-cleaving ribozymes.

Nathan Riccitelli1, Andrej Lupták.   

Abstract

The hepatitis delta virus (HDV) ribozymes are catalytic RNAs capable of cleaving their own sugar-phosphate backbone. The HDV virus possesses the ribozymes in both sense and antisense genomic transcripts, where they are essential for processing during replication. These ribozymes have been the subject of intense biochemical scrutiny and have yielded a wealth of mechanistic insights. In recent years, many HDV-like ribozymes have been identified in nearly all branches of life. The ribozymes are implicated in a variety of biological events, including episodic memory in mammals and retrotransposition in many eukaryotes. Detailed analysis of additional HDV-like ribozyme isolates will likely reveal many more biological functions and provide information about the evolution of this unique RNA.
© 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Hepatitis delta virus; In vitro selection; Motif searches; RNA; Retrotransposition; Ribozyme; Self-scission

Mesh:

Substances:

Year:  2013        PMID: 24156943     DOI: 10.1016/B978-0-12-381286-5.00004-4

Source DB:  PubMed          Journal:  Prog Mol Biol Transl Sci        ISSN: 1877-1173            Impact factor:   3.622


  16 in total

Review 1.  Host RNA circles and the origin of hepatitis delta virus.

Authors:  John M Taylor
Journal:  World J Gastroenterol       Date:  2014-03-21       Impact factor: 5.742

2.  Determination of hepatitis delta virus ribozyme N(-1) nucleobase and functional group specificity using internal competition kinetics.

Authors:  Daniel L Kellerman; Kandice S Simmons; Mayra Pedraza; Joseph A Piccirilli; Darrin M York; Michael E Harris
Journal:  Anal Biochem       Date:  2015-05-01       Impact factor: 3.365

Review 3.  RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.

Authors:  Jiří Šponer; Giovanni Bussi; Miroslav Krepl; Pavel Banáš; Sandro Bottaro; Richard A Cunha; Alejandro Gil-Ley; Giovanni Pinamonti; Simón Poblete; Petr Jurečka; Nils G Walter; Michal Otyepka
Journal:  Chem Rev       Date:  2018-01-03       Impact factor: 60.622

4.  Beyond the Plateau: pL Dependence of Proton Inventories as a Tool for Studying Ribozyme and Ribonuclease Catalysis.

Authors:  Suhyun Yoon; Michael E Harris
Journal:  Biochemistry       Date:  2021-09-08       Impact factor: 3.321

Review 5.  Hepatitis D Virus Replication.

Authors:  John M Taylor
Journal:  Cold Spring Harb Perspect Med       Date:  2015-11-02       Impact factor: 6.915

6.  Inverse thio effects in the hepatitis delta virus ribozyme reveal that the reaction pathway is controlled by metal ion charge density.

Authors:  Pallavi Thaplyal; Abir Ganguly; Sharon Hammes-Schiffer; Philip C Bevilacqua
Journal:  Biochemistry       Date:  2015-03-23       Impact factor: 3.162

7.  Hatchet ribozyme structure and implications for cleavage mechanism.

Authors:  Luqian Zheng; Christoph Falschlunger; Kaiyi Huang; Elisabeth Mairhofer; Shuguang Yuan; Juncheng Wang; Dinshaw J Patel; Ronald Micura; Aiming Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-14       Impact factor: 11.205

8.  Hepatitis delta virus-like circular RNAs from diverse metazoans encode conserved hammerhead ribozymes.

Authors:  Marcos de la Peña; Raquel Ceprián; John L Casey; Amelia Cervera
Journal:  Virus Evol       Date:  2021-02-18

9.  Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics.

Authors:  Sanshu Li; Ronald R Breaker
Journal:  BMC Genomics       Date:  2017-10-13       Impact factor: 3.969

Review 10.  HDV-Like Viruses.

Authors:  Jimena Pérez-Vargas; Rémi Pereira de Oliveira; Stéphanie Jacquet; Dominique Pontier; François-Loïc Cosset; Natalia Freitas
Journal:  Viruses       Date:  2021-06-23       Impact factor: 5.048

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