| Literature DB >> 24155726 |
George Bakanidze1, Maya Roinishvili, Eka Chkonia, Werner Kitzrow, Sarina Richter, Konrad Neumann, Michael H Herzog, Andreas Brand, Imke Puls.
Abstract
The nicotinic system is involved in the pathophysiology of schizophrenia. However, very little is known about its genetic basis and how it relates to clinical symptoms and potentially pharmacological intervention. Here, we investigated five single nucleotide polymorphisms (SNPs) [rs3826029] [rs2337506] [rs982574] [rs904952] [rs2337980] of the cholinergic nicotinic receptor gene, alpha 7 subunit (CHRNA7) and their association to schizophrenia. We found an association with rs904952 (p = 0.009) in a German sample of 224 schizophrenic patients and 224 healthy control subjects. The same trend was shown in an independent Georgian sample of 50 schizophrenic patients, 57 first order unaffected relatives, and 51 healthy controls. In addition, visual backward masking (VBM), a sensitive test for early visual information processing, was assessed in the Georgian sample. In line with prior studies, VBM performance deficits were much more pronounced in schizophrenic patients and their unaffected relatives compared to healthy controls (schizophrenic patients: 156 ms; unaffected relatives: 60 ms; healthy controls: 33 ms). VBM was strongly correlated with SNP rs904952 (H[2] = 7.3, p = 0.026). Our results further support the notion that changes in the nicotinic system are involved in schizophrenia and open the avenue for pharmacological intervention.Entities:
Keywords: CHRNA7; endophenotypes; genetics of schizophrenia; nicotinic receptor; verniers; visual masking
Year: 2013 PMID: 24155726 PMCID: PMC3805058 DOI: 10.3389/fpsyt.2013.00133
Source DB: PubMed Journal: Front Psychiatry ISSN: 1664-0640 Impact factor: 4.157
Demographics.
| Variable | German sample | Georgian sample | |||||
|---|---|---|---|---|---|---|---|
| Patients | Controls | Statistics | Patients | Relatives | Controls | Statistics | |
| Participants (#) | 224 | 224 | NA | 50 | 57 | 51 | NA |
| Male (%) | 50.7 | 58.0 | 2.3 (0.13) | 76 | 45.6 | 60.8 | 10.3 (0.006) |
| Age (mean) | 37.0 | 40.8 | 3.33 (0.07) | 34 | 35 | 34 | 0.16 (0.8) |
| Education in years (mean) | – | – | – | 13 | 14 | 16 | 7.5 (0.001) |
| Visual acuity (mean VA by FrACT) | – | – | – | 1.5 | 1.7 | 1.7 | 2.5 (0.08) |
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Figure 1Shine-through paradigm. (A) A vernier comprised two vertical bars which were slightly offset to the left (not shown) or right (shown here). Observers indicated this offset direction. For each observer, we determined the individual vernier duration (VD) for which 75% correct responses were reached. (B) In the next step, this individual vernier duration was used for each observer. The vernier offset was fixed at 71′′ (arc sec). This vernier was followed by a blank screen (ISI) and a grating comprised of 25 aligned verniers, i.e., verniers without offset. SOA = VD + ISI.
Single nucleotide polymorphisms genotyped within the CHRNA7 gene.
| CHRNA7 SNPs | Position | MAF | Alleles | Location | Reference |
|---|---|---|---|---|---|
| rs3826029 | 3112042 | 0.409 | A/G | 5′near gene | Iwata et al. ( |
| rs2337506 | 3136624 | 0.455 | G/A | Intron 2 | Iwata et al. ( |
| rs982574 | 3164580 | 0.215 | G/C | Intron 2 | Iwata et al. ( |
| rs904952 | 3209302 | 0.382 | C/T | Intron 4 | Iwata et al. ( |
| rs2337980 | 3234753 | 0.416 | T/C | Intron 4 | Iwata et al. ( |
The characteristics of SNPs are derived from the NCBI database. Contig position indicates the exact position of each SNP at contig NT_010194.16/17. MAF (minor allele frequency) is derived from 1000 Genome phase 1 genotype data from 1094 worldwide individuals, released in the May 2011 dataset. The minor allele is depicted in the first position. Location indicates the SNP position within the CHRNA7 gene.
Amplification and restriction details of SNPs studied.
| CHRNA7 SNPs | Genotype | Forward primer | Reverse primer | Product size | Restriction products | Enzyme | GFR in% | ||
|---|---|---|---|---|---|---|---|---|---|
| DE | GEO | ||||||||
| rs3826029 | A/G | gtgaatccagttcagctgtc | gtgactgagcttgactgtac | 243 | 243, 137, 106 | 56 | 0.4 | 0 | |
| rs2337506 | G/A | gccttggagtcacagctc | gcaatttcctactcctcgtc | 255 | 255, 170, 85 | 56 | 0.4 | 0 | |
| rs982574 | G/C | cataacttagaatactcaacaag | gttgccaccacatctaccttc | 164 | 164, 86, 78 | 56 | 0.9 | 0.6 | |
| rs904952 | C/T | caaattggttaatttctgttcctAg | ccatggaaaacaggatgagtg | 134 | 134, 109, 25 | 56 | 0 | 0 | |
| rs2337980 | T/C | ctgtcctccggtatctgtg | cagtcacttctgtgtctaag | 271 | (193, 78), 156, 37 | 56 | 0.2 | 0.6 | |
Forward and reverse primers, as well as product sizes, restriction products, and restriction enzymes are shown in the table. In a forward primer of rs904952 C has been mutated into A, it is shown as captial letter. .
Hardy–Weinberg equilibrium in German and Georgian samples.
| SNP | Genotype | HWE | |
|---|---|---|---|
| German | Georgian | ||
| rs3826029 | A/G | 0.578 | 0.377 |
| rs2337506 | G/A | 0.899 | 0.946 |
| rs982574 | G/C | 0.146 | 1.0 |
| rs904952 | C/T | 0.005 | 0.632 |
| rs2337980 | T/C | 0.566 | 0.513 |
Genotype frequencies in German and Georgian samples.
| rs3826029 | rs2337506 | rs982574 | rs904952 | rs2337980 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A/A | A/G | G/G | G/G | G/A | A/A | G/G | G/C | C/C | C/C | C/T | T/T | T/T | T/C | C/C | |
| Whole | 0.089 | 0.361 | 0.551 | 0.449 | 0.437 | 0.114 | 0.025 | 0.266 | 0.703 | 0.127 | 0.494 | 0.380 | 0.367 | 0.500 | 0.127 |
| Patients | 0.040 | 0.360 | 0.600 | 0.480 | 0.460 | 0.060 | 0.060 | 0.240 | 0.700 | 0.060 | 0.560 | 0.380 | 0.480 | 0.400 | 0.120 |
| Relatives | 0.070 | 0.421 | 0.509 | 0.456 | 0.439 | 0.105 | 0.018 | 0.246 | 0.719 | 0.088 | 0.491 | 0.421 | 0.351 | 0.474 | 0.175 |
| Controls | 0.157 | 0.294 | 0.549 | 0.412 | 0.412 | 0.176 | 0 | 0.314 | 0.686 | 0.235 | 0.431 | 0.333 | 0.275 | 0.627 | 0.078 |
| Whole | 0.025 | 0.295 | 0.676 | 0.563 | 0.375 | 0.058 | 0.040 | 0.210 | 0.777 | 0.201 | 0.567 | 0.232 | 0.225 | 0.513 | 0.259 |
| Patients | 0.022 | 0.317 | 0.661 | 0.558 | 0.393 | 0.049 | 0.040 | 0.246 | 0.741 | 0.152 | 0.638 | 0.210 | 0.210 | 0.554 | 0.237 |
| Controls | 0.027 | 0.272 | 0.692 | 0.567 | 0.357 | 0.067 | 0.040 | 0.174 | 0.813 | 0.250 | 0.496 | 0.254 | 0.241 | 0.473 | 0.281 |
Genotype frequencies for each SNP in both samples and in each group of these sample.
Association of CHRNA7 with diagnosis in German and Georgian samples.
| Minor/major | Georgian sample | χ2 | German sample | χ2 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MAF | MAF | |||||||||
| Patients | Relatives | Controls | Patients | Controls | ||||||
| rs3826029 | A/G | 0.220 | 0.281 | 0.304 | 5.84 | 0.212 | 0.181 | 0.164 | 1 | 0.606 |
| rs2337506 | G/A | 0.290 | 0.325 | 0.382 | 3.47 | 0.482 | 0.246 | 0.248 | 1 | 0.606 |
| rs982574 | G/C | 0.180 | 0.143 | 0.157 | 4.46 | 0.347 | 0.128 | 0.092 | 3.46 | 0.177 |
| rs904952 | C/T | 0.340 | 0.333 | 0.451 | 8.85 | 0.072 | 0.471 | 0.495 | 6.73 | 0.009 |
| rs2337980 | T/C | 0.320 | 0.412 | 0.400 | 7.74 | 0.101 | 0.487 | 0.477 | 2.75 | 0.252 |
Association of CHRNA7 polymorphisms with the diagnosis in German and Georgian samples. Showing the genotype with minor allele in the first position, MAF, minor allele frequencies; χ.
Figure 2Linkage disequilibrium analysis in German (A) and Georgian (B) samples. The strength of LD is determined as Lewontin’s D′. In the German sample the SNPs rs3826029 and rs2337506 showed high linkage with D′ of 0.97. In the Georgian sample, rs3826029 and rs2337506 with D′0.94 and rs3826029 and rs982574 with D′ of 0.89 were in high linkage disequilibrium.
Figure 3Allelic variants of the five SNPs (rs3826029 (A), rs904952 (B), rs2337506 (C), rs2337980 (D), rs982574 (E)) of patients, first-order relatives, and healthy controls. In all of the five SNPs, for at least one allelic variant the count for relatives is in between patients and controls. However, the differences between groups are not statistically significant.
Figure 4Mean SOA in milliseconds for each Georgian group. Schizophrenic patients (n = 50) perform worse than healthy relatives (n = 57) and controls (n = 51), SD = 81.7,p < 0.001.
Figure 5Stimulus onset asynchrony’s of the different genotype carriers of SNP rs904952 in the Georgian patient group. SD = 95.1,p = 0.026.