Literature DB >> 24155405

Near-atomic resolution cryo-electron microscopic structure of dengue serotype 4 virus.

Victor A Kostyuchenko1, Pau Ling Chew, Thiam-Seng Ng, Shee-Mei Lok.   

Abstract

Dengue virus (DENV), a mosquito-borne virus, is responsible for millions of cases of infections worldwide. There are four DENV serotypes (DENV1 to -4). After a primary DENV infection, the antibodies elicited confer lifetime protection against that DENV serotype. However, in a secondary infection with another serotype, the preexisting antibodies may cause antibody-dependent enhancement (ADE) of infection of macrophage cells, leading to the development of the more severe form of disease, dengue hemorrhagic fever. Thus, a safe vaccine should stimulate protection against all dengue serotypes simultaneously. To facilitate the development of a vaccine, good knowledge of different DENV serotype structures is crucial. Structures of DENV1 and DENV2 had been solved previously. Here we present a near-atomic resolution cryo-electron microscopy (cryo-EM) structure of mature DENV4. Comparison of the DENV4 structure with similar-resolution cryo-EM structures of DENV1 and DENV2 showed differences in surface charge distribution, which may explain their differences in binding to cellular receptors, such as heparin. Also, observed variations in amino acid residues involved in interactions between envelope and membrane proteins on the virus surface correlate with their ability to undergo structural changes at higher temperatures.

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Year:  2013        PMID: 24155405      PMCID: PMC3911750          DOI: 10.1128/JVI.02641-13

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  31 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
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3.  Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins.

Authors:  Shee-Mei Lok; Victor Kostyuchenko; Grant E Nybakken; Heather A Holdaway; Anthony J Battisti; Soila Sukupolvi-Petty; Dagmar Sedlak; Daved H Fremont; Paul R Chipman; John T Roehrig; Michael S Diamond; Richard J Kuhn; Michael G Rossmann
Journal:  Nat Struct Mol Biol       Date:  2008-02-10       Impact factor: 15.369

4.  Version 1.2 of the Crystallography and NMR system.

Authors:  Axel T Brunger
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

5.  Mutation of the dengue virus type 2 envelope protein heparan sulfate binding sites or the domain III lateral ridge blocks replication in Vero cells prior to membrane fusion.

Authors:  John T Roehrig; Siritorn Butrapet; Nathan M Liss; Susan L Bennett; Betty E Luy; Thomas Childers; Karen L Boroughs; Janae L Stovall; Amanda E Calvert; Carol D Blair; Claire Y-H Huang
Journal:  Virology       Date:  2013-04-06       Impact factor: 3.616

6.  Structural changes in dengue virus when exposed to a temperature of 37°C.

Authors:  Guntur Fibriansah; Thiam-Seng Ng; Victor A Kostyuchenko; Jaime Lee; Sumarlin Lee; Jiaqi Wang; Shee-Mei Lok
Journal:  J Virol       Date:  2013-05-01       Impact factor: 5.103

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Cryo-EM reconstruction of dengue virus in complex with the carbohydrate recognition domain of DC-SIGN.

Authors:  Elena Pokidysheva; Ying Zhang; Anthony J Battisti; Carol M Bator-Kelly; Paul R Chipman; Chuan Xiao; G Glenn Gregorio; Wayne A Hendrickson; Richard J Kuhn; Michael G Rossmann
Journal:  Cell       Date:  2006-02-10       Impact factor: 41.582

Review 9.  Dengue prevention and 35 years of vector control in Singapore.

Authors:  Eng-Eong Ooi; Kee-Tai Goh; Duane J Gubler
Journal:  Emerg Infect Dis       Date:  2006-06       Impact factor: 6.883

10.  Cryo-EM structure of the mature dengue virus at 3.5-Å resolution.

Authors:  Xiaokang Zhang; Peng Ge; Xuekui Yu; Jennifer M Brannan; Guoqiang Bi; Qinfen Zhang; Stan Schein; Z Hong Zhou
Journal:  Nat Struct Mol Biol       Date:  2012-12-16       Impact factor: 15.369

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  38 in total

Review 1.  Biochemistry and Molecular Biology of Flaviviruses.

Authors:  Nicholas J Barrows; Rafael K Campos; Kuo-Chieh Liao; K Reddisiva Prasanth; Ruben Soto-Acosta; Shih-Chia Yeh; Geraldine Schott-Lerner; Julien Pompon; October M Sessions; Shelton S Bradrick; Mariano A Garcia-Blanco
Journal:  Chem Rev       Date:  2018-04-13       Impact factor: 60.622

Review 2.  Temperature dependent conformational change of dengue virus.

Authors:  Xinzheng Zhang; Lei Sun; Michael G Rossmann
Journal:  Curr Opin Virol       Date:  2015-05-13       Impact factor: 7.090

3.  Combined effects of the structural heterogeneity and dynamics of flaviviruses on antibody recognition.

Authors:  Kimberly A Dowd; Swati Mukherjee; Richard J Kuhn; Theodore C Pierson
Journal:  J Virol       Date:  2014-07-30       Impact factor: 5.103

4.  Dengue Virus Infection with Highly Neutralizing Levels of Cross-Reactive Antibodies Causes Acute Lethal Small Intestinal Pathology without a High Level of Viremia in Mice.

Authors:  Satoru Watanabe; Kitti Wing Ki Chan; Jiaqi Wang; Laura Rivino; Shee-Mei Lok; Subhash G Vasudevan
Journal:  J Virol       Date:  2015-03-18       Impact factor: 5.103

Review 5.  Structures of viral membrane proteins by high-resolution cryoEM.

Authors:  Z Hong Zhou
Journal:  Curr Opin Virol       Date:  2014-05-03       Impact factor: 7.090

Review 6.  Shake, rattle, and roll: Impact of the dynamics of flavivirus particles on their interactions with the host.

Authors:  Richard J Kuhn; Kimberly A Dowd; Carol Beth Post; Theodore C Pierson
Journal:  Virology       Date:  2015-03-30       Impact factor: 3.616

7.  Physiological temperatures reduce dimerization of dengue and Zika virus recombinant envelope proteins.

Authors:  Stephan T Kudlacek; Lakshmanane Premkumar; Stefan W Metz; Ashutosh Tripathy; Andrey A Bobkov; Alexander Matthew Payne; Stephen Graham; James A Brackbill; Michael J Miley; Aravinda M de Silva; Brian Kuhlman
Journal:  J Biol Chem       Date:  2018-04-20       Impact factor: 5.157

8.  Mapping the Human Memory B Cell and Serum Neutralizing Antibody Responses to Dengue Virus Serotype 4 Infection and Vaccination.

Authors:  Usha K Nivarthi; Nurgun Kose; Gopal Sapparapu; Douglas Widman; Emily Gallichotte; Jennifer M Pfaff; Benjamin J Doranz; Daniela Weiskopf; Alessandro Sette; Anna P Durbin; Steve S Whitehead; Ralph Baric; James E Crowe; Aravinda M de Silva
Journal:  J Virol       Date:  2017-02-14       Impact factor: 5.103

Review 9.  Zika Virus Structure, Maturation, and Receptors.

Authors:  Devika Sirohi; Richard J Kuhn
Journal:  J Infect Dis       Date:  2017-12-16       Impact factor: 5.226

10.  Structure of the thermally stable Zika virus.

Authors:  Victor A Kostyuchenko; Elisa X Y Lim; Shuijun Zhang; Guntur Fibriansah; Thiam-Seng Ng; Justin S G Ooi; Jian Shi; Shee-Mei Lok
Journal:  Nature       Date:  2016-04-19       Impact factor: 49.962

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