Literature DB >> 24153374

Computer-aided molecular design of solvents for accelerated reaction kinetics.

Heiko Struebing1, Zara Ganase, Panagiotis G Karamertzanis, Eirini Siougkrou, Peter Haycock, Patrick M Piccione, Alan Armstrong, Amparo Galindo, Claire S Adjiman.   

Abstract

Solvents can significantly alter the rates and selectivity of liquid-phase organic reactions, often hindering the development of new synthetic routes or, if chosen wisely, facilitating routes by improving rates and selectivities. To address this challenge, a systematic methodology is proposed that quickly identifies improved reaction solvents by combining quantum mechanical computations of the reaction rate constant in a few solvents with a computer-aided molecular design (CAMD) procedure. The approach allows the identification of a high-performance solvent within a very large set of possible molecules. The validity of our CAMD approach is demonstrated through application to a classical nucleophilic substitution reaction for the study of solvent effects, the Menschutkin reaction. The results were validated successfully by in situ kinetic experiments. A space of 1,341 solvents was explored in silico, but required quantum-mechanical calculations of the rate constant in only nine solvents, and uncovered a solvent that increases the rate constant by 40%.

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Year:  2013        PMID: 24153374     DOI: 10.1038/nchem.1755

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  6 in total

1.  Single solvent molecules can affect the dynamics of substitution reactions.

Authors:  R Otto; J Brox; S Trippel; M Stei; T Best; R Wester
Journal:  Nat Chem       Date:  2012-06-03       Impact factor: 24.427

2.  Universal solvation model based on solute electron density and on a continuum model of the solvent defined by the bulk dielectric constant and atomic surface tensions.

Authors:  Aleksandr V Marenich; Christopher J Cramer; Donald G Truhlar
Journal:  J Phys Chem B       Date:  2009-05-07       Impact factor: 2.991

3.  A rationalization of the solvent effect on the Diels-Alder reaction in ionic liquids using multiparameter linear solvation energy relationships.

Authors:  Riccardo Bini; Cinzia Chiappe; Veronica Llopsis Mestre; Christian Silvio Pomelli; Thomas Welton
Journal:  Org Biomol Chem       Date:  2008-06-05       Impact factor: 3.876

4.  Exploring solvent effects upon the Menshutkin reaction using a polarizable force field.

Authors:  Orlando Acevedo; William L Jorgensen
Journal:  J Phys Chem B       Date:  2010-07-01       Impact factor: 2.991

5.  VBSM: a solvation model based on valence bond theory.

Authors:  Peifeng Su; Wei Wu; Casey P Kelly; Christopher J Cramer; Donald G Truhlar
Journal:  J Phys Chem A       Date:  2008-12-18       Impact factor: 2.781

6.  Impact of solvent polarity on N-heterocyclic carbene-catalyzed beta-protonations of homoenolate equivalents.

Authors:  Brooks E Maki; Eric V Patterson; Christopher J Cramer; Karl A Scheidt
Journal:  Org Lett       Date:  2009-09-03       Impact factor: 6.005

  6 in total
  11 in total

1.  Chemical reactivity: Inverse solvent design.

Authors:  Donald G Truhlar
Journal:  Nat Chem       Date:  2013-09-22       Impact factor: 24.427

2.  Computer-aided Molecular Design of Water Compatible Visible Light Photosensitizers for Dental Adhesive.

Authors:  Farhana Abedin; Brock Roughton; Qiang Ye; Paulette Spencer; Kyle Camarda
Journal:  Chem Eng Sci       Date:  2016-09-30       Impact factor: 4.311

3.  SN2 versus E2 reactions in a complex microsolvated environment: theoretical analysis of the equilibrium and activation steps of a nucleophilic fluorination.

Authors:  Fernando M Lisboa; Josefredo R Pliego
Journal:  J Mol Model       Date:  2022-05-21       Impact factor: 1.810

4.  What Does the Machine Learn? Knowledge Representations of Chemical Reactivity.

Authors:  Joshua A Kammeraad; Jack Goetz; Eric A Walker; Ambuj Tewari; Paul M Zimmerman
Journal:  J Chem Inf Model       Date:  2020-03-03       Impact factor: 4.956

5.  Learning To Predict Reaction Conditions: Relationships between Solvent, Molecular Structure, and Catalyst.

Authors:  Eric Walker; Joshua Kammeraad; Jonathan Goetz; Michael T Robo; Ambuj Tewari; Paul M Zimmerman
Journal:  J Chem Inf Model       Date:  2019-08-19       Impact factor: 4.956

6.  Fast selective homogeneous extraction of UO22+ with carboxyl-functionalised task-specific ionic liquids.

Authors:  Yinyong Ao; Jian Chen; Min Xu; Jing Peng; Wei Huang; Jiuqiang Li; Maolin Zhai
Journal:  Sci Rep       Date:  2017-03-14       Impact factor: 4.379

7.  A Method of Calculating the Kamlet-Abboud-Taft Solvatochromic Parameters Using COSMO-RS.

Authors:  James Sherwood; Joe Granelli; Con R McElroy; James H Clark
Journal:  Molecules       Date:  2019-06-13       Impact factor: 4.411

8.  Prediction of Optimal Conditions of Hydrogenation Reaction Using the Likelihood Ranking Approach.

Authors:  Valentina A Afonina; Daniyar A Mazitov; Albina Nurmukhametova; Maxim D Shevelev; Dina A Khasanova; Ramil I Nugmanov; Vladimir A Burilov; Timur I Madzhidov; Alexandre Varnek
Journal:  Int J Mol Sci       Date:  2021-12-27       Impact factor: 5.923

9.  Towards efficient discovery of green synthetic pathways with Monte Carlo tree search and reinforcement learning.

Authors:  Xiaoxue Wang; Yujie Qian; Hanyu Gao; Connor W Coley; Yiming Mo; Regina Barzilay; Klavs F Jensen
Journal:  Chem Sci       Date:  2020-09-14       Impact factor: 9.825

Review 10.  Computer Aided Design of Solvent Blends for Hybrid Cooling and Antisolvent Crystallization of Active Pharmaceutical Ingredients.

Authors:  Oliver L Watson; Suela Jonuzaj; John McGinty; Jan Sefcik; Amparo Galindo; George Jackson; Claire S Adjiman
Journal:  Org Process Res Dev       Date:  2021-05-06       Impact factor: 3.317

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