| Literature DB >> 24151469 |
Julia Ast1, Alina C Stiebler, Johannes Freitag, Michael Bölker.
Abstract
Cellular compartmentalization into organelles serves to separate biological processes within the environment of a single cell. While some metabolic reactions are specific to a single organelle, others occur in more than one cellular compartment. Specific targeting of proteins to compartments inside of eukaryotic cells is mediated by defined sequence motifs. To achieve multiple targeting to different compartments cells use a variety of strategies. Here, we focus on mechanisms leading to dual targeting of peroxisomal proteins. In many instances, isoforms of peroxisomal proteins with distinct intracellular localization are encoded by separate genes. But also single genes can give rise to differentially localized proteins. Different isoforms can be generated by use of alternative transcriptional start sites, by differential splicing or ribosomal read-through of stop codons. In all these cases different peptide variants are produced, of which only one carries a peroxisomal targeting signal. Alternatively, peroxisomal proteins contain additional signals that compete for intracellular targeting. Dual localization of proteins residing in both the cytoplasm and in peroxisomes may also result from use of inefficient targeting signals. The recent observation that some bona fide cytoplasmic enzymes were also found in peroxisomes indicates that dual targeting of proteins to both the cytoplasm and the peroxisome might be more widespread. Although current knowledge of proteins exhibiting only partial peroxisomal targeting is far from being complete, we speculate that the metabolic capacity of peroxisomes might be larger than previously assumed.Entities:
Keywords: alternative splicing; glycolysis; peroxisomes; protein import; ribosomal read-through
Year: 2013 PMID: 24151469 PMCID: PMC3798809 DOI: 10.3389/fphys.2013.00297
Source DB: PubMed Journal: Front Physiol ISSN: 1664-042X Impact factor: 4.566
Overview on peroxisomal proteins with dual localization.
| Malate dehydrogenase | Gene duplication | Cyt, Mito, Pex | McAlister-Henn and Thompson, | |
| NADPH-dependent isocitrate dehydrogenase | Gene duplication | Cyt, Mito, Pex | Haselbeck and McAlister-Henn, | |
| Citrate synthase | Gene duplication | Mito, Pex | Kim et al., | |
| NADPH-dependent isocitrate dehydrogenase | Alternative transcription initiation sites | Cyt, Mito, Pex | Szewczyk et al., | |
| Malate dehydrogenase | Differential splicing | Cyt, Pex | Kabran et al., | |
| 6-phosphogluconate dehydrogenase | Differential splicing | Cyt, Pex | Strijbis et al., | |
| Hydroxypyruvate reductase | Cucurbita sp. (cv. Kurokawa Amakuri Nankin) | Differential splicing | Cyt, Pex | Hayashi et al., |
| Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) | Differential splicing | Cyt, Pex | Freitag et al., | |
| Phosphoglycerate kinase (PGK) | Differential splicing | Cyt, Pex | Freitag et al., | |
| Phosphoglycerate kinase (PGK) | Ribosomal read-through | Cyt, Pex | Freitag et al., | |
| Triose phosphate isomerase (TPI) | Ribosomal read-through | Cyt, Pex | Freitag et al., | |
| Iron-containing superoxide dismutase | Alternative start codons | Plas/Mito, Pex | Bodyl and Mackiewicz, | |
| 70-kDa heat shock protein | Alternative start codons | Pex, Plas | Wimmer et al., | |
| 3-Hydroxy-3-methylglutaryl coenzyme A lyase | Multiple targeting signals | Mito, Pex | Ashmarina et al., | |
| Type II NAD(P)H dehydrogenase | Multiple targeting signals | Mito, Pex | Carrie et al., | |
| Catalase A | Multiple targeting signals | Mito, Pex | Petrova et al., | |
| NAD+-dependent glycerol 3-phosphat dehydrogenase | Protein modification (Phosphorylation) | Pex, Cyt/Nuc | Jung et al., | |
| Glucose-6-phosphat dehydrogenase | Redox dependent heterodimerization | Pex, Plas | Meyer et al., | |
| Alanine-glyoxylate aminotransferase | Protein folding | Cyt, Pex | Fodor et al., | |
| Epoxide hydrolase | Level of expression, quarternary structure | Cyt, Pex | Arand et al., |
Abbreviations: Cyt, cytosol; Mito, mitochondrion; Nuc, nucleus; Pex, peroxisome; Plas, plastid.
Figure 1Schematic overview on the diversity of mechanism leading to dual targeting of peroxisomal proteins. Peroxisomal targeting signals are indicated in pink, while mitochondrial signal sequences are indicated in yellow. For further explanations see text.