| Literature DB >> 24146924 |
Doris Hillemann1, Sven Hoffner, Daniela Cirillo, Francis Drobniewski, Elvira Richter, Sabine Rüsch-Gerdes.
Abstract
Three networks/projects involving 27 European countries were established to investigate the quality of second-line drug (SLD) susceptibility testing with conventional and molecular methods. 1. The "Baltic-Nordic TB-Laboratory Network" comprised 11 reference laboratories in the Baltic-Nordic States. They performed SLD testing in the first phase with a panel of 20 Mycobacterium tuberculosis strains. After several laboratories made technical changes a second panel of 10 strains with a higher proportion of resistant strains were tested. Although the concordance for Ofloxacin, Kanamycin, and Capreomycin was consistently high, the largest improvements in performance were achieved for the analysis of Ofloxacin resistant (from 88.9 to 95.0%), and Capreomycin resistant (from 71.0 to 88.9%) strains. 2. Within the FP7 TB PAN-NET project (EU Grant agreement 223681) a quality control panel to standardize the EQA (External Quality Assurance) for first-line drugs (FLD) and SLD testing for phenotypic and molecular methods was established. The strains were characterized by their robustness, unambiguous results when tested, and low proportion of secondary drug resistances. 3. The (European Reference Laboratory Network-TB) ERLN-TB network analyzed four different panels for drug resistance testing using phenotypic and molecular methods; in two rounds in 2010 the 31 participating laboratories began with 5 strains, followed by 10 strains and 6 additional crude DNA extracts in 2011 and 2012 were examined by conventional DST and molecular methods. Overall, we demonstrated the importance of developing inter-laboratory networks to establish quality assurance and improvement of SLD testing of M. tuberculosis.Entities:
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Year: 2013 PMID: 24146924 PMCID: PMC3795631 DOI: 10.1371/journal.pone.0076765
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Agreement of SLD testing in different laboratories in phase I and phase II of the “Baltic-Nordic TB-Laboratory Network” study.
| Concordance % (no. of strains) | ||||||||
| Strains | Amikacin | Capreomycin | Cycloserine | Ethionamide/Protionamide | Kanamycin | Ofloxacin | PAS | |
| Phase I | ||||||||
| susceptible | 95.3 (17) | 97.7 (16) | 96.4 (20) | 87.9 (14) | 100 (16) | 99.4 (19) | 92.6 (19) | |
| Resistent | 84.7 (3) | 71.0 (4) | No strains | 71.3 (6) | 91.7 (4) | 88.9 (1) | 80.0 (1) | |
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| Phase II | ||||||||
| susceptible | 86.7 (5) | 100 (6) | 91.8 (7) | 89.1 (6) | 93.3 (5) | 100 (6) | 97.5 (5) | |
| resistent | 60.0 (5) | 88.9 (4) | 66.7 (3) | 81.9 (4) | 96.7 (5) | 95 (4) | 91.8 (5) | |
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PAS, p-amino salicylic acid.
Methods applied in the different laboratories in both phases of SLD proficiency testing (“Baltic-Nordic TB-Laboratory Network” study).
| Drug concentration in µg/ml (number of laboratories | |||||
| Drug | Proportion method | Critical concentration | BACTEC | MGIT | MIC |
| Amikacin | 20+40 (2) | 6 (1), 8 (1) | 1(6) | 1(3) | |
| Capreomycin | 20+40 (2) | 2 (1) | 1.25 (5), 5 (1) | 2.5 (3) | |
| Cycloserine | 30 (5); 20+40 (1) | 40 (1) | 30, 40 (1) | ||
| Ethionamide/Protionamide | 20+40 (1); | 2.5 (3), 5 (2) | 2.5 (3) | 4 (1) | |
| Kanamycin | 20+40 (2) | 5 (3) | 5 (3) | ||
| Ofloxacin | 0.5+1+2 (1) | 2.5 (1) | 2(6) | 1 (1), 2 (2) | 4 (1) |
| PAS | 0.25 (1); 0.5 (2); 0.5+1(1) | 1+2(1); 2(1); 4(1) | 4 (1) | 2 (1) | |
some laboratories used more than one method.
PAS, p-amino salicylic acid.
LJ, Löwenstein Jensen; MIC, minimal inhibitory concentration.
Figure 1Compilation of strains in round 1 of the WP3 of the TB PAN-NET” project.
Agreement of SLD results between laboratories in the “Workpackage 3 of the FP7 TB PAN-NET”.
| Concordance % (no. of strains tested, no of tests performed | ||||
| Molecular methods | Phenotypic methods | |||
| Drug tested | Susceptible strains | Resistent strains | Susceptible strains | Resistent strains |
| Ofloxacin | 100% (40, 490) | 100% (15, 185) | 99.8% (40, 490) | 100% (185) |
| Amikacin | 100% (47, 577) | 100% (9, 111) | 99.8% (39, 469) | 100% (9, 111) |
| Capreomycin | 100% (44, 540) | 100% (12, 148) | 98.5% (37, 327) | 95.2% (17, 209) |
| Kanamycin | 100% (44, 540) | 100% (12, 148) | 98.7% (38, 458) | 96.7% (18, 139) |
All strains were tested in three rounds of testing: round 1 (n = 13), in the intermediate round (n = 11), and in round 2 of the “Workpackage 3 of the FP7 TB PAN-NET”.
All laboratories applied line probe assays, some additionally DNA sequencing methods.
The majority of laboratories applied MGIT 960 DST, some the proportion method on solid media, but the data are incomplete; intermediate level strains were excluded from this analysis.
Figure 2Certificates issued for a succesful EQA round.
Agreement of SLD results between laboratories in the four rounds of quality control.
| Concordance % (no of tests performed | ||||||||||
| Spring 2010 | Autumn 2010 | Autumn 2011 | Autumn 2012 | Total | ||||||
| Drug | susc. strains | res.strains | susc. strains | res.strains | susc. strains | res.strains | susc. strains | res.strains | susc. strains | res.strains |
| Isoniazid | 100 (124) | 100 (31) | 97.8 (90) | 100 (23) | 99.4 (174) | 100 (75) | 100 (184) | 100 (46) | 99.5 (572) | 100 (175) |
| Rifampicin | 98.9 (93) | 96.8 (93) | 97.8 (92) | 95.5 (93) | 100 (174) | 100 (75) | 99.5 (207) | 95.5 (22) | 99.3 (566) | 97.8 (181) |
| Ethambutol | 99.4 (154) | n.d. | 96.5 (114) | n.d. | 98.6 (216) | 84.2 (19) | 99.5 (207) | n.d. | 98.7 (691) | 84.2 (19) |
| Pyrazinamide | 97.7 (88) | 100 (22) | 86.7 (75) | n.d. | 94.4 (197) | 90 (20) | 98.9 (188) | 85.0 (20) | 95.4 (548) | 91.9 (62) |
| Streptomycin | 99.2 (119) | 100 (30) | 97.1 (69) | 90 (20) | 99.5 (190) | 93.8 (48) | 98.6 (220) | 99.2 (119) | 98.8 (598) | 97.2 (217) |
| Ofloxacin | n.d. | n.d. | 100 (65) | n.d. | 100 (161) | 100 (17) | 98.6 (144) | 94.1 (17) | 99.5 (370) | 97.1 (34) |
| Amikacin | n.d. | n.d. | 100 (53) | n.d. | 96.1 (179) | n.d. | 100 (136) | 97.1 (34) | 98.1 (368) | 97.1 (34) |
| Capreomycin | n.d. | n.d. | 96.4 (55) | n.d. | 100 (158) | n.d. | 100 (136) | 91.2 (34) | 99.4 (349) | 91.2 (34) |
| Kanamycin | n.d. | n.d. | n.d. | n.d. | 100 (116) | 76.9 (13) | 100 (96) | 95.5 (22) | 100 (212) | 88.6 (35) |
The majority of laboratories applied MGIT 960 DST, only one laboratory performed the proportion method on solid media, but the data are incomplete.
susc. = susceptible, res. = resistant; intermediate level strains were excluded from this analysis.
n.d. = not done.