| Literature DB >> 24145577 |
O Omikorede1, C Qi, T Gorman, P Chapman, A Yu, D M Smith, T P Herbert.
Abstract
OBJECTIVE: The objective of this study was to determine whether ER stress correlates with β-cell dysfunction in obesity-associated diabetes.Entities:
Year: 2013 PMID: 24145577 PMCID: PMC3817349 DOI: 10.1038/nutd.2013.35
Source DB: PubMed Journal: Nutr Diabetes ISSN: 2044-4052 Impact factor: 5.097
List of genes on the Taqman low-density array (TLDA) whose mRNA expression was determined by qPCR
| Activating transcription factor 3 | Atf3 | NM012912.1 | Rn00563784_m1 | |
| Activating transcription factor 4 | Atf4 | CREBP2 | NM024403.1 | Rn00824644_g1 |
| Activating transcription factor 5 | Atf5 | Atfx | NM172336.3 | Rn00597319_m1 |
| CCAAT/Enhancer binding protein, beta | C/EBPβ | LAP/TF5/NF-IL6 | NM024125.4 | Rn00824635_s1 |
| Calreticulin | Calr | NM022399.2 | Rn00574451_m1 | |
| Calnexin | Canx | NM172008.2 | Rn00596877_m1 | |
| Caspase 12 | Casp 12 | Rn00590440_m1 | ||
| Growth arrest and DNA damage-inducible protein | Ddit3 | GADD153/CHOP(10) | NM024134 | Rn00492098_g1 |
| DnaJ (Hsp40) homologue, subfamily B, member 9 | Dnajb9 | ERdj4 | NM012699.2 | Rn00562259_m1 |
| DnaJ (Hsp40) homologue, subfamily C, member 3 | Dnajc3 | HSP40, DnaJ, p58 | NM022232.1 | Rn00573712_m1 |
| PRKR-like endoplasmic reticulum kinase | Eif2ak3 | PERK/PEK | NM031599.1 | Rn00581002_m1 |
| FK506 binding protein 11 | FkBP11 | FkBP19 | NM001013105.1 | Rn01532810_m1 |
| Growth arrest and DNA damage-inducible, alpha | Gadd45a | DDIT1 | NM024127.2 | Rn00577049_m1 |
| Homocysteine-inducible, ER stress-inducible | Herpud1 | Herp, Mif1 | NM053523.1 | Rn00585371_m1 |
| Heat shock 70 kDa protein 5 | Hspa5 | BiP/GRP78 | NM013083.1 | Rn00565250_m1 |
| Hypoxia upregulated 1 | Hyou1 | orp150/Cab140 | NM138867.2 | Rn00593982_m1 |
| Mitogen-activated protein kinase 8 | Mapk8 | JNK | XM341399.3 | Rn01453358_m1 |
| Myeloid differentiation primary response gene 116 | Myd116 | GADD34 | NM133546.2 | Rn00591894_m1 |
| Nucleobindin | Nucb1 | NM053463.1 | Rn00584973_m1 | |
| Protein disulphide isomerase family A, member 3 | Pdia3 | ERp57/GRP58 | NM017319 | Rn00569027_m1 |
| Protein disulphide isomerase family A, member 4 | Pdia4 | ERp72/ERP70 | NM053849.1 | Rn00587766_m1 |
| Paraoxonase 2 | Pon2 | NM001013082.1 | Rn01456019_m1 | |
| Quiescin Q6 sulfhydryl oxidase 1 | Qscn6 | qsox1 | NM053431.3 | Rn00584808_m1 |
| Tribbles 3 | Trib3 | SINK/SKIP3 | NM144755.2 | Rn00595314_m1 |
| UDP-glucose ceramide glucosyltransferase-like 1 | Ugcgl1 | UGGT/UGTR | NM133596.1 | Rn00592293_m1 |
| Wolframin | Wfs1 | DFNA14 | NM031823.1 | Rn00582735_m1 |
| X-box binding protein 1 | Xbp1 | TREB5 | NM001004210.1 | Rn01752572_g1 |
| Cyclin D1 | Ccnd1 | PRAD1 | NM007631 | Rn00432359_m1 |
| Glucokinase/ Hexokinase 4 | Gck | MODY2/HK4 | NM010292 | Rn00561265_m1 |
| Insulin 2 | Ins2 | NM008387 | Rn01774648_g1 | |
| Insulin receptor substrate 2 | Irs2 | NM001168633.1 | Rn01482270_s1 | |
| Pancreatic and duodenal homeobox 1 | Pdx1 | MODY4 | NM008814 | Rn00755591_m1 |
| Glucose transporter type 2 | Slc2a2 | GLUT2 | X78722 | Rn00563565_m1 |
| Acetyl CoA carboxylase | Acaca | ACCA | AAG01858 | Rn00573474_m1 |
| Fatty acid synthase | Fasn | Fas | NM007988 | Rn00569117_m1 |
| Free fatty acid receptor 1 | Ffar1 | GPR40 | NM153304.1 | Rn00824686_s1 |
| HMG-CoA reductase | Hmgcr | M62766 | Rn00565598_m1 | |
| Low density lipoprotein receptor | Ldlr | FHC | NM010700 | Rn00598438_m1 |
| Sterol regulatory element binding protein–1 | Srebp1 | ADD1 | XM213329.4 | Rn01495763_g1 |
| Uncoupling protein 2 | Ucp2 | SLC25A8 | U69135 | Rn01754856_m1 |
Figure 1Obesity leads to increased ER stress in ZO rats. (ai) Body weight in grams, (aii) plasma insulin after an overnight fast and (aiii) % GHb in age-matched Zucker rats (obese) and their lean littermates (lean). (b) Differential gene expression between Zucker rats (obese) and their lean littermates (lean) assessed using TLDA is expressed as a fold change and normalised to 18S ribosomal RNA. Data are shown as mean±s.e.m. (Zucker obese, n=5; lean control, n=4). (c) Relative expression of selected transcripts from the islets of Zucker rats (obese) and their lean littermates (lean) assessed by single-gene Taqman RT-qPCR. Results are expressed as relative expression levels and normalised to the housekeeping gene ribosomal protein P2 (RPP2). Values are mean±s.e.m. determined from control lean (n=4) and obese rats (n=5). Statistical significance was determined using an unpaired two-tailed Student t-test. *P<0.05; **P<0.01; ***P<0.001 obese versus lean control for each gene.
Figure 2Obesity leads to increased ER stress in female ZDF rats. (ai) Body weight in grams, (aii) plasma insulin after an overnight fast and (aiii) %GHb in fZDF rats (obese) and their lean littermates (lean). (b) Differential gene expression in the islets of fZDF rats (obese) and their lean littermates (lean) assessed using TLDA is expressed as a fold change and is normalised to 18S ribosomal RNA. Data are shown as mean±s.e.m. (n=3). (c) Relative expression of selected transcripts from the islets of fZDF rats (obese) and their lean littermates (lean) by single-gene Taqman RT-qPCR. Results are expressed as relative expression levels and normalised to ribosomal protein P2 (RPP2). Values are mean±s.e.m. determined from control lean (n=3) and obese rats (n=3). Statistical significance was determined using an unpaired two-tailed Student t-test. *P<0.05; **P<0.01; ***P<0.001 obese versus lean control for each gene.
Figure 3Obesity-induced ER stress in the islets of Langerhans is not exacerbated by diet-induced diabetes. (ai) Body weight in grams, (aii) plasma insulin after an overnight fast and (aiii) %GHb in chow-fed fZDF rats and HF-fZDF rats. (b) Differential gene expression in the islets of fZDF rats and HF-fZDF rats assessed using TLDA and expressed as a fold change and normalised to 18S ribosomal RNA. Data are shown as mean±s.e.m. (fZDF, n=3; HF-fZDF, n=3). (c) Relative expression of selected transcripts from the islets of HF-fZDF versus chow-fed fZDF rats by single-gene Taqman RT-qPCR. Results are expressed as relative expression levels and normalised to ribosomal protein P2 (RPP2). Values are mean±s.e.m. determined from control chow-fed fZDF (n=6) and HF-fZDF rats (n=6). Statistical significance was determined using an unpaired two-tailed Student t-test. No significant changes were found.
Figure 4Protein expression of downstream markers of ER stress in islets from lean, obese and high-fat-diet-fed fZDF rats. Protein lysates from islets isolated from three age-matched fZDF rats (obese), HF-fZDF (HFD) rats and their heterozygous lean littermates (lean) were separated by SDS-PAGE and analysed by western blotting. As controls, lysates from the islets isolated from Wistar rats or MIN6 cells treated with 1 μM thapsigargin for 2 h or sorbitol for 1 h were run alongside. Proteins were detected using antisera against (a) Calreticulin, HYOU1, GRP78, p-IRE1α, p-eIF2α and CHOP and as protein loading control rpS6 and (b) p-JNK and total JNK1/2 as loading control. Western blots were quantified using Image-J software.
Figure 5Simplified schematic figure showing the relationship between upstream transducers of the UPR and selected downstream targets. Open arrows represent the direction of change in the expression of selected mRNA/protein in fZDF obese rats compared with their lean controls. Shaded arrows represent the direction of change in the phosphorylation of selected proteins in fZDF obese rats compared with their lean controls. Pro-apoptotic genes are represented in bold.