| Literature DB >> 24141991 |
Yafei Duan1, Ping Liu, Jitao Li, Jian Li, Baoquan Gao, Ping Chen.
Abstract
Peroxiredoxin is a superfamily of antioxidative proteins that play important roles in protecting organisms against the toxicity of reactive oxygen species. In this study, a full-length of peroxiredoxin 5 (designated EcPrx5) cDNA was cloned from the ridgetail white prawn Exopalaemon carinicauda by using rapid amplification of cDNA ends (RACE) approaches. The full-length cDNA of the EcPrx5 was of 827 bp, containing a 5' untranslated region (UTR) of 14 bp, a 3' UTR of 228 bp with a poly (A) tail, and an open reading frame of 585 bp encoding a polypeptide of 194 amino acids with the predicted molecular weight of 20.83 kDa and estimated isoelectric point of 7.62. BLAST analysis revealed that amino acids of EcPrx5 shared 89, 68, 66, 65, 53 and 51 % identity with that of Macrobrachium rosenbergii, Megachile rotundata, Harpegnathos saltator, Acromyrmex echinatior, Danio rerio, and Homo sapiens counterparts, respectively. The conserved Prx domain and the signature of peroxiredoxin catalytic center identified in EcPrx5 suggested that EcPrx5 belonged to the atypical 2-Cys Prx subgroup. Real time quantitative RT-PCR analysis indicated that EcPrx5 could be detected in all the tested tissues with highest expression level in hepatopancreas. As time progressed, the expression level of EcPrx5 both in hemocytes and hepatopancreas increased in the first 6 h after Vibrio anguillarum and white spot syndrome virus challenge, and showed different expression profiles. The results indicated that EcPrx5 involved in immune response against bacterial and viral infection in E. carinicauda.Entities:
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Year: 2013 PMID: 24141991 PMCID: PMC3835957 DOI: 10.1007/s11033-013-2702-4
Source DB: PubMed Journal: Mol Biol Rep ISSN: 0301-4851 Impact factor: 2.316
Primer sequences used in this study
| Primer | Sequence (5′–3′) |
|---|---|
| F1 (forward) | TGGCGACCATTCTCAGTG |
| R1 (reverse) | CTTTAGACTTCGGTTCCT |
| F2 (forward) | AGATTGTTCCACGGTTTTGTG |
| R2 (reverse) | AATACTTTGCGTCCTGCTGAC |
| 18S-HF | TATACGCTAGTGGAGCTGGAA |
| 18S-HR | GGGGAGGTAGTGACGAAAAAT |
| UPM | CTAATACGACTCACTATAGGGCAAGCAGTGGTATCAACGCAGAGT CTAATACGACTCACTATAGGGC |
Fig. 1Nucleotide and deduced amino acid sequences of EcPrx5 cDNA of E. carinicauda. The letters in box indicated the start codon (ATG), the stop codon (TAA) and the polyadenylation signal sequence (ATAAA). The Prx5 signature motifs (VPGAFTPGCSKTHLPG and DGTGLTCSL) were underlined and the conserved cysteines were shaded
Fig. 2Multiple alignment of EcPrx5 with other known Prx5 s: M. rosenbergii (HQ668096), A. aegypti (XP_001658149), Bombus terrestris (XP_003394825), X. laevis (AEM44542), Rattus norvegicus (AAH78771), B. taurus (AAG53661), H. sapiens (CAG33484). Peroxiredoxins signatures VPGAFTPGCSKTHLPG and DGTGLTCSL were marked by frame and the two highly conserved amino acids were indicated by solid lines
Fig. 3Phylogenetic tree of different species Prxs on the basis of the amino acid sequence using neighbor-joining distance analysis. The numbers at the forks indicated the bootstrap. The protein sequences used for phylogenetic analysis were as follows: Prx1 from H. sapiens (CAG28580), Mus musculus (CAM16508), B. taurus (NP_776856) and R. norvegicus (NP_476455), Prx2 from H. sapiens (CAG46588), M. musculus (AAH86783), B. taurus (NP_777188) and R. norvegicus (NP_058865), Prx3 from H. sapiens (CAG29340), M. musculus (AAH05626), B. taurus (NP_776857), R. norvegicus (EDL94585) and D. rerio (NP_001013478), Prx4 from H. sapiens (CAG46506), M. musculus (CAM23141), B. taurus (NP_776858) and R. norvegicus (NP_445964), Prx5 from H. sapiens (CAG33484), M. musculus (AAG13450), B. taurus (AAG53661), Sus scrofa (NP_999309), R. norvegicus (AAH78771), X. laevis (AEM44542), M. rosenbergii (HQ668096), N. vitripennis (XP_001603445), A. aegypti (XP_001658149), B. terrestris (XP_003394825), H. saltator (EFN85437), Apis florae (XP_003694601) and P. xuthus (BAM18222), Prx6 from H. sapiens (NP_004896), M. musculus (NP_031479), Gallus gallus (NP_001034418), D. rerio (NP_957099) and Ictalurus punctatus (ABG77029)
Fig. 4Tissue specific expression of EcPrx5 mRNA related to hepatopancreas expression by the real-time PCR. The reference gene is 18S. Vertical bars represent the mean ± SD (N = 3)
Fig. 5The EcPrx5 mRNA expression levels relative to 18S mRNA levels analyzed by real-time PCR in haemocytes of E. carinicauda at different time intervals after V. anguillarum and WSSV challenge treatment. Vertical bars represent the mean ± SD (N = 3). Data without shared letters were significantly different (P < 0.05) among treatments in the same exposure time
Fig. 6The EcPrx5 mRNA expression levels relative to 18S mRNA levels analyzed by real-time PCR in hepatopancreas of E. carinicauda at different time intervals after V. anguillarum and WSSV challenge treatment. Vertical bars represent the mean ± SD (N = 3). Data without shared letters were significantly different (P < 0.05) among treatments in the same exposure time