Literature DB >> 24135716

Transcriptional establishment of cell-type identity: dynamics and causal mechanisms of T-cell lineage commitment.

Ellen V Rothenberg1, Ameya Champhekar2, Sagar Damle2, Marissa Morales Del Real2, Hao Yuan Kueh2, Long Li2, Mary A Yui2.   

Abstract

Precursor cell entry into the T-cell developmental pathway can be divided into two phases by the closure of T-lineage commitment. As cells decide against the last alternative options to the T-cell fate, they turn on the transcription factor Bcl11b and silence expression of a group of multipotent progenitor regulatory factors that include hematopoietic transcription factor PU.1. Functional perturbation tests show that Bcl11b is needed for commitment while PU.1 actively participates in keeping open access to alternative fates, until it is silenced; however, PU.1 and Bcl11b both contribute positively to T-cell development. Our recent work reviewed here sheds light on the transcriptional regulatory network that determines the timing and irreversibility of Bcl11b activation, the ways that Notch signaling from the thymic microenvironment restricts the action of PU.1 to prevent it from diverting cells to non-T fates, and the target genes that PU.1 still regulates under the influence of Notch signaling to contribute to T-cell generation. We argue that T-cell development depends on the sequential operation of two interlaced, but mutually antagonistic, gene regulatory networks, one initially supporting expansion before commitment and the other imposing a "terminal" differentiation process on committed cells.
Copyright © 2013 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2013        PMID: 24135716      PMCID: PMC3990665          DOI: 10.1101/sqb.2013.78.020271

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN: 0091-7451


  59 in total

1.  Transcriptional regulatory networks downstream of TAL1/SCL in T-cell acute lymphoblastic leukemia.

Authors:  Teresa Palomero; Duncan T Odom; Jennifer O'Neil; Adolfo A Ferrando; Adam Margolin; Donna S Neuberg; Stuart S Winter; Richard S Larson; Wei Li; X Shirley Liu; Richard A Young; A Thomas Look
Journal:  Blood       Date:  2006-04-18       Impact factor: 22.113

Review 2.  Zoned out: functional mapping of stromal signaling microenvironments in the thymus.

Authors:  Howard T Petrie; Juan Carlos Zúñiga-Pflücker
Journal:  Annu Rev Immunol       Date:  2007       Impact factor: 28.527

Review 3.  Launching the T-cell-lineage developmental programme.

Authors:  Ellen V Rothenberg; Jonathan E Moore; Mary A Yui
Journal:  Nat Rev Immunol       Date:  2008-01       Impact factor: 53.106

4.  Architecture of a lymphomyeloid developmental switch controlled by PU.1, Notch and Gata3.

Authors:  Marissa Morales Del Real; Ellen V Rothenberg
Journal:  Development       Date:  2013-03       Impact factor: 6.868

Review 5.  Transcriptional drivers of the T-cell lineage program.

Authors:  Ellen V Rothenberg
Journal:  Curr Opin Immunol       Date:  2012-01-19       Impact factor: 7.486

Review 6.  Multilayered specification of the T-cell lineage fate.

Authors:  Ellen V Rothenberg; Jingli Zhang; Long Li
Journal:  Immunol Rev       Date:  2010-11       Impact factor: 12.988

7.  PU.1 is a major downstream target of AML1 (RUNX1) in adult mouse hematopoiesis.

Authors:  Gang Huang; Pu Zhang; Hideyo Hirai; Shannon Elf; Xiaomei Yan; Zhao Chen; Steffen Koschmieder; Yutaka Okuno; Tajhal Dayaram; Joseph D Growney; Ramesh A Shivdasani; D Gary Gilliland; Nancy A Speck; Stephen D Nimer; Daniel G Tenen
Journal:  Nat Genet       Date:  2007-11-11       Impact factor: 38.330

8.  Molecular dissection of prethymic progenitor entry into the T lymphocyte developmental pathway.

Authors:  C Chace Tydell; Elizabeth-Sharon David-Fung; Jonathan E Moore; Lee Rowen; Tom Taghon; Ellen V Rothenberg
Journal:  J Immunol       Date:  2007-07-01       Impact factor: 5.422

9.  Comprehensive methylome map of lineage commitment from haematopoietic progenitors.

Authors:  Hong Ji; Lauren I R Ehrlich; Jun Seita; Peter Murakami; Akiko Doi; Paul Lindau; Hwajin Lee; Martin J Aryee; Rafael A Irizarry; Kitai Kim; Derrick J Rossi; Matthew A Inlay; Thomas Serwold; Holger Karsunky; Lena Ho; George Q Daley; Irving L Weissman; Andrew P Feinberg
Journal:  Nature       Date:  2010-08-15       Impact factor: 49.962

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Authors:  Michael Mingueneau; Taras Kreslavsky; Daniel Gray; Tracy Heng; Richard Cruse; Jeffrey Ericson; Sean Bendall; Matthew H Spitzer; Garry P Nolan; Koichi Kobayashi; Harald von Boehmer; Diane Mathis; Christophe Benoist; Adam J Best; Jamie Knell; Ananda Goldrath; Vladimir Joic; Daphne Koller; Tal Shay; Aviv Regev; Nadia Cohen; Patrick Brennan; Michael Brenner; Francis Kim; Tata Nageswara Rao; Amy Wagers; Tracy Heng; Jeffrey Ericson; Katherine Rothamel; Adriana Ortiz-Lopez; Diane Mathis; Christophe Benoist; Natalie A Bezman; Joseph C Sun; Gundula Min-Oo; Charlie C Kim; Lewis L Lanier; Jennifer Miller; Brian Brown; Miriam Merad; Emmanuel L Gautier; Claudia Jakubzick; Gwendalyn J Randolph; Paul Monach; David A Blair; Michael L Dustin; Susan A Shinton; Richard R Hardy; David Laidlaw; Jim Collins; Roi Gazit; Derrick J Rossi; Nidhi Malhotra; Katelyn Sylvia; Joonsoo Kang; Taras Kreslavsky; Anne Fletcher; Kutlu Elpek; Angelique Bellemare-Pelletier; Deepali Malhotra; Shannon Turley
Journal:  Nat Immunol       Date:  2013-05-05       Impact factor: 25.606

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  10 in total

1.  Activation of Mouse Tcrb: Uncoupling RUNX1 Function from Its Cooperative Binding with ETS1.

Authors:  Jiang-Yang Zhao; Oleg Osipovich; Olivia I Koues; Kinjal Majumder; Eugene M Oltz
Journal:  J Immunol       Date:  2017-06-21       Impact factor: 5.422

Review 2.  Transcriptional determination and functional specificity of myeloid cells: making sense of diversity.

Authors:  Silvia Monticelli; Gioacchino Natoli
Journal:  Nat Rev Immunol       Date:  2017-06-05       Impact factor: 53.106

3.  A regulatory network of microRNAs confers lineage commitment during early developmental trajectories of B and T lymphocytes.

Authors:  Sameena Nikhat; Anurupa D Yadavalli; Arpita Prusty; Priyanka K Narayan; Dasaradhi Palakodeti; Cornelis Murre; Jagan M R Pongubala
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-16       Impact factor: 11.205

4.  Lunatic, Manic, and Radical Fringe Each Promote T and B Cell Development.

Authors:  Yinghui Song; Vivek Kumar; Hua-Xing Wei; Ju Qiu; Pamela Stanley
Journal:  J Immunol       Date:  2015-11-25       Impact factor: 5.422

5.  Distinct mechanisms regulate IL1B gene transcription in lymphoid CD4 T cells and monocytes.

Authors:  Sree H Pulugulla; Thomas A Packard; Nicole L K Galloway; Zachary W Grimmett; Gilad Doitsh; Juraj Adamik; Deborah L Galson; Warner C Greene; Philip E Auron
Journal:  Cytokine       Date:  2018-10-06       Impact factor: 3.861

6.  Core-binding factor leukemia hijacks the T-cell-prone PU.1 antisense promoter.

Authors:  E van der Kouwe; G Heller; A Czibere; J A Pulikkan; C Agreiter; L H Castilla; R Delwel; A Di Ruscio; A K Ebralidze; M Forte; F Grebien; E Heyes; L Kazianka; J Klinger; C Kornauth; T Le; K Lind; I A M Barbosa; T Pemovska; A Pichler; A-S Schmolke; C M Schweicker; H Sill; W R Sperr; A Spittler; S Surapally; B Q Trinh; P Valent; K Vanura; R S Welner; J Zuber; D G Tenen; P B Staber
Journal:  Blood       Date:  2021-10-14       Impact factor: 25.476

Review 7.  Single-Cell Genomics for Virology.

Authors:  Angela Ciuffi; Sylvie Rato; Amalio Telenti
Journal:  Viruses       Date:  2016-05-04       Impact factor: 5.048

8.  An enriched network motif family regulates multistep cell fate transitions with restricted reversibility.

Authors:  Yujie Ye; Xin Kang; Jordan Bailey; Chunhe Li; Tian Hong
Journal:  PLoS Comput Biol       Date:  2019-03-07       Impact factor: 4.475

Review 9.  The development of T cells from stem cells in mice and humans.

Authors:  Farbod Famili; Anna-Sophia Wiekmeijer; Frank Jt Staal
Journal:  Future Sci OA       Date:  2017-03-16

Review 10.  Insights into Thymus Development and Viral Thymic Infections.

Authors:  Francesco Albano; Eleonora Vecchio; Maurizio Renna; Enrico Iaccino; Selena Mimmi; Carmen Caiazza; Alessandro Arcucci; Angelica Avagliano; Valentina Pagliara; Giuseppe Donato; Camillo Palmieri; Massimo Mallardo; Ileana Quinto; Giuseppe Fiume
Journal:  Viruses       Date:  2019-09-09       Impact factor: 5.048

  10 in total

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