| Literature DB >> 24131873 |
Xin Li1, Xinying Huo, Kai Liu, Xiuting Li, Meilin Wang, Haiyan Chu, Feifei Hu, Huanxi Sheng, Zhengdong Zhang, Baoli Zhu.
Abstract
The grainyhead like 2 (GRHL2) is a transcription factor, and the role among noise exposed workers is not well established. We tested whether GRHL2 polymorphisms are associated with the risk of noise-induced hearing loss (NIHL) in Chinese high intensity noise exposed workers. We genotyped six polymorphisms of GRHL2 gene (i.e., rs611419, rs3779617, rs3735713, rs3735714, rs3735715, and rs6989650) of 340 NIHL cases and 356 control subjects who exposed to noise higher than 85 dB (A) [Lex, 8 h=time-weighted average of levels of noise exposure (Lex) for a nominal 8 h working day] in a Chinese population. Compared with rs611419 AA genotype, the AT/TT genotypes conferred protection against NIHL [adjusted odds ratio (OR)=0.71, 95% confidence interval (CI)=0.52-0.98]. No altered NIHL risk was associated with the other five polymorphisms. In the combined analyses, we found that the combined genotypes with three to eight variant alleles were associated with an decrease risk of NIHL compared with those with zero to two variant alleles, and the decrease risk was more pronounced among subgroups of exposure time>20 yr (0.31, 0.16-0.62) and drinkers (0.51, 0.29-0.90). Polymorphisms of GRHL2 may positively contribute to the etiology of NIHL.Entities:
Mesh:
Substances:
Year: 2013 PMID: 24131873 PMCID: PMC4202744 DOI: 10.2486/indhealth.2012-0084
Source DB: PubMed Journal: Ind Health ISSN: 0019-8366 Impact factor: 2.179
Distribution of selected variables between the NIHL cases and controls
| Variables | Cases (n=340) | Controls (n=356) | |||||
|---|---|---|---|---|---|---|---|
| n | % | n | % | ||||
| Age (years) (mean ± SD) | 39.3 ± 5.8 | 39.8 ± 5.8 | 0.217 | ||||
| <40 | 172 | 50.6 | 165 | 46.4 | 0.263 | ||
| ≥40 | 168 | 49.4 | 191 | 53.7 | |||
| Sex | |||||||
| Male | 306 | 90.0 | 317 | 89.0 | 0.681 | ||
| Female | 34 | 10.0 | 39 | 11.0 | |||
| Exposure level [dB (A)] | 92.9 ± 4.0 | 92.8 ± 3.4 | 0.873 | ||||
| Exposure time (years) | 17.0 ± 6.9 | 17.0 ± 7.0 | 0.891 | ||||
| ≤20 | 235 | 69.1 | 248 | 69.7 | 0.876 | ||
| >20 | 105 | 30.9 | 108 | 30.3 | |||
| Threshold (dB) | 37.6 ± 11.7 | 14.2 ± 3.9 | <0.001 | ||||
| Smoking status | |||||||
| Non-smokers | 144 | 42.4 | 152 | 42.7 | 0.927 | ||
| Smokers | 196 | 57.6 | 204 | 57.3 | |||
| Drinking status | |||||||
| Non-drinkers | 186 | 54.7 | 198 | 55.6 | 0.809 | ||
| Drinkers | 154 | 45.3 | 158 | 44.4 | |||
aStudent’s t-test for age, exposure level, exposure time and threshold distributions between cases and controls; two-sided χ2 test for the other selected variables between cases and controls.
Fig. 1.Pairwise Linkage Disequilibrium (LD) among seven SNPs in 3′ untranslated region of the GRHL2 gene.
The LD plots were generated by Haploview 4.1. The value within each diamond represents the pairwise correlation (R2) between SNPs defined by the upper left and the upper right sides of the diamond. The diamonds without value mean the R2=1.0, showed complete linkage disequilibrium.
Fig. 2.The location of the six SNPs in the GRHL2 gene.
The exons were indicated by black boxes and the untranslated regions were denoted by gray boxes.
Basic information of the six SNPs in GRHL2 gene
| SNPs (rs no.) | Base change | Location | MAF | Genotyped (%) | |||
|---|---|---|---|---|---|---|---|
| HapMapa | Case | Control | |||||
| rs611419 | A>T | 5′ near gene | 0.356 | 0.425 | 0.482 | 0.613 | 99.9 |
| rs3779617 | G>A | Exon 9 | 0.116 | 0.090 | 0.103 | 0.316 | 99.9 |
| rs3735713 | G>A | 3′UTR | 0.302 | 0.297 | 0.309 | 0.806 | 100.0 |
| rs3735714 | C>T | 3′UTR | 0.389 | 0.379 | 0.392 | 0.883 | 99.9 |
| rs3735715 | G>A | 3′UTR | 0.422 | 0.404 | 0.438 | 0.153 | 100.0 |
| rs6989650 | C>T | 3′UTR | 0.233 | 0.208 | 0.222 | 0.652 | 99.9 |
aMAF from the HapMap database (http://www.hapmap.org). bGoodness-of-fit χ2 test for Hardy-Weinberg equilibrium in the controls.
Genotype and allele frequencies of the GRHL2 polymorphisms among the NIHL cases and controls and the associations with risk of NIHL
| Genotypes | Cases (n=340) | Controls (n=356) | Adjusted OR (95%CI)b | |||||
|---|---|---|---|---|---|---|---|---|
| n | % | n | % | |||||
| rs611419 | 339 | 356 | ||||||
| AA | 118 | 34.8 | 98 | 27.5 | 0.097 | 1.00 (reference) | ||
| AT | 154 | 45.4 | 173 | 48.6 | 0.74 (0.52–1.04) | |||
| TT | 67 | 19.8 | 85 | 23.9 | 0.66 (0.44–1.01) | |||
| 0.038 | ||||||||
| AT/TT | 221 | 65.2 | 258 | 72.5 | 0.038 | 0.71 (0.52–0.98) | ||
| T allele | 0.425 | 0.482 | 0.033 | |||||
| rs3779617 | 339 | 356 | ||||||
| GG | 279 | 82.3 | 285 | 80.1 | 0.683 | 1.00 (reference) | ||
| AG | 59 | 17.4 | 69 | 19.4 | 0.89 (0.60–1.30) | |||
| AA | 1 | 0.3 | 2 | 0.5 | 0.77 (0.07–8.96) | |||
| 0.414 | ||||||||
| AG/AA | 60 | 17.7 | 71 | 19.9 | 0.450 | 0.88 (0.60–1.29) | ||
| A allele | 0.09 | 0.103 | 0.428 | |||||
| rs3735713 | 340 | 356 | ||||||
| GG | 172 | 50.6 | 169 | 47.4 | 0.588 | 1.00 (reference) | ||
| AG | 134 | 39.4 | 154 | 43.3 | 0.84 (0.61–1.15) | |||
| AA | 34 | 10 | 33 | 9.3 | 0.99 (0.58–1.67) | |||
| 0.632 | ||||||||
| AG/AA | 168 | 49.4 | 187 | 52.6 | 0.411 | 0.87 (0.64–1.17) | ||
| A allele | 0.297 | 0.309 | 0.628 | |||||
| rs3735714 | 339 | 356 | ||||||
| CC | 134 | 39.5 | 131 | 36.8 | 0.720 | 1.00 (reference) | ||
| CT | 153 | 45.2 | 171 | 48 | 0.87 (0.63–1.21) | |||
| TT | 52 | 15.3 | 54 | 15.2 | 0.92 (0.58–1.45) | |||
| 0.627 | ||||||||
| CT/TT | 205 | 60.5 | 225 | 63.2 | 0.459 | 0.87 (0.64–1.19) | ||
| T allele | 0.379 | 0.392 | 0.624 | |||||
| rs3735715 | 340 | 356 | ||||||
| GG | 122 | 35.8 | 119 | 33.4 | 0.345 | 1.00 (reference) | ||
| AG | 161 | 47.4 | 162 | 45.5 | 0.99 (0.71–1.38) | |||
| AA | 57 | 16.8 | 75 | 21.1 | 0.73 (0.47–1.14) | |||
| 0.213 | ||||||||
| AG/AA | 218 | 64.2 | 237 | 66.6 | 0.496 | 0.91 (0.67–1.25) | ||
| A allele | 0.404 | 0.438 | 0.202 | |||||
| rs6989650 | 339 | 356 | ||||||
| CC | 212 | 62.5 | 217 | 61 | 0.737 | 1.00 (reference) | ||
| CT | 113 | 33.3 | 120 | 33.7 | 0.93 (0.68–1.29) | |||
| TT | 14 | 4.2 | 19 | 5.3 | 0.73 (0.35–1.50) | |||
| 0.529 | ||||||||
| CT/TT | 127 | 37.5 | 139 | 39 | 0.668 | 0.92 (0.67–1.25) | ||
| T allele | 0.208 | 0.222 | 0.527 | |||||
aTwo-sided χ2 test for the distributions of genotype frequencies. bAdjusted for age, sex, exposure level and exposure time in logistic regression model.
Frequency distributions of the combined genotypes of the GRHL2 polymorphisms between the cases and controls and the associations with risk of NIHL
| Numbers of variantsa | Cases (n=337) | Controls (n=356) | Adjusted OR (95%CI)c | ||||
|---|---|---|---|---|---|---|---|
| n | % | n | % | ||||
| 0 | 7 | 2.1 | 1 | 0.3 | 0.029 | ||
| 1 | 32 | 9.5 | 20 | 5.6 | |||
| 2 | 47 | 14 | 46 | 12.9 | |||
| 3 | 68 | 20.2 | 90 | 25.3 | |||
| 4 | 85 | 25.2 | 83 | 23.3 | |||
| 5 | 53 | 15.7 | 58 | 16.3 | |||
| 6 | 33 | 9.8 | 30 | 8.4 | |||
| 7 | 11 | 3.3 | 23 | 6.5 | |||
| 8 | 1 | 0.3 | 5 | 1.4 | |||
| Combined genotypes | |||||||
| 0–2 | 86 | 25.5 | 67 | 18.8 | 0.034 | 1.00 (reference) | |
| 3–8 | 251 | 74.5 | 289 | 81.2 | 0.67 (0.47–0.97) | ||
aThe 0–8 represents the numbers of variants within the combined genotypes; the variant alleles used for the calculation were rs611419T, rs3779617A, rs3735713A, rs3735714T, rS3735715A, and rs6989650T; 0–2=0–2 variant alleles. bTwo-sided χ2 test for the distributions of genotype frequencies. cAdjusted for age, sex, exposure level and exposure time in logistic regression model.
Stratification analyses between the combined genotypes of the GRHL2 polymorphisms and risk of NIHL
| Variables | Cases/controls | Combined genotypes (cases/controls) | Adjusted OR (95%CI)b | |||
|---|---|---|---|---|---|---|
| 0–2 | 3–8 | |||||
| Age | ||||||
| <40 | 171/165 | 44/33 | 127/132 | 0.212 | 0.71 (0.43–1.19) | |
| ≥40 | 166/191 | 42/34 | 124/157 | 0.084 | 0.64 (0.39–1.07) | |
| Gender | ||||||
| Male | 303/317 | 73/58 | 230/259 | 0.077 | 0.71 (0.48–1.04) | |
| Female | 34/39 | 41530 | 21/30 | 0.159 | 0.55 (0.19–1.62) | |
| Exposure time (years) | ||||||
| ≤20 | 233/248 | 51/52 | 182/196 | 0.806 | 0.93 (0.60–1.44) | |
| >20 | 104/108 | 35/15 | 69/93 | 0.001 | 0.31 (0.16–0.62) | |
| Smoking status | ||||||
| Non-smokers | 143/152 | 35/25 | 108/127 | 0.087 | 0.60 (0.34–1.08) | |
| Smokers | 194/204 | 51/42 | 143/162 | 0.179 | 0.72 (0.45–1.15) | |
| Drinking status | ||||||
| Non-drinkers | 184/198 | 47/44 | 137/154 | 0.446 | 0.84 (0.52–1.35) | |
| Drinkers | 153/158 | 39/23 | 114/135 | 0.016 | 0.51 (0.29–0.90) | |
aTwo-sided χ2 test for the distributions of genotype frequencies. bAdjusted for age, sex, exposure level and exposure time in logistic regression model.