| Literature DB >> 24131481 |
Kati Hyvärinen1, Anita M Tuomainen, Saara Laitinen, Georg Alfthan, Irma Salminen, Maija Leinonen, Pekka Saikku, Petri T Kovanen, Matti Jauhiainen, Pirkko J Pussinen.
Abstract
BACKGROUND: Chronic infections have been demonstrated to maintain low-grade systemic inflammation and associate with atherosclerosis. We studied the inflammation- and lipid homeostasis-related effects of Aggregatibacter actinomycetemcomitans (Aa) and Chlamydia pneumoniae (Cpn) infections on the epididymal and inguinal adipose tissue (AT) transcriptomes and fatty acid distribution in apolipoprotein (apo) E-deficient mice. Chow-fed apoE-deficient mice were exposed to 1) chronic intranasal infection with C. pneumoniae (Cpn group), 2) recurrent intravenous infection with A. actinomycetemcomitans (Aa group), 3) a combination of both types of infection (Cpn + Aa group), or 4) infection with the vehicle (control group). Epididymal and inguinal AT gene expression was analyzed using an Illumina Mouse WG-6 v2.0 platform and quantitative PCR (QPCR). Microarray data were analyzed using Gene Ontology enrichment analysis. AT fatty acid analysis was performed using gas-liquid chromatography.Entities:
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Year: 2013 PMID: 24131481 PMCID: PMC4008135 DOI: 10.1186/1471-2164-14-709
Source DB: PubMed Journal: BMC Genomics ISSN: 1471-2164 Impact factor: 3.969
Experimental design of the study
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The black squares represent Cpn inoculations and the black circles Aa inoculations. The controls received the respective vehicle (white squares and circles). †, sacrifice; Aa, A. actinomycetemcomitans; Cpn, C. pneumoniae.
infection-enriched GO terms in the inguinal AT transcriptome
| GO:0005515 | Protein binding | <0.001 | Spon2, S100a8, Ltf, Des, Retnlg, D6Mit97, LOC100047788, Igl, Igh-V11, Ighg3, Igkv12-46, Igkv5-48, Igkv13-84, Igkv19-93, Igkv15-103 | Zbtb7a, Rhob, Aldh1a1, Ywhag, Ccdc6, Ptplb, Antxr1, Timp4, Rps3a, Ddr2, Cidea, Nr1d2, G0s2, Lep, Acta1 |
| GO:0019731 | Antibacterial humoral response | 0.009 | LOC100047788 | - |
| GO:0019730 | Antimicrobial humoral response | 0.009 | LOC100047788 | - |
| GO:0003823 | Antigen binding | 0.009 | Igkv5-48, LOC100047788 | - |
aP-values are corrected for multiple hypotheses using Benjamini-Hochberg false discovery rate.
bFold change limit 2.0.
Number of biological replicates is 3.
GO, gene ontology. The maximum of 20 GO categories is shown.
infection-enriched GO terms in the inguinal AT transcriptome
| GO:0035634 | Response to stilbenoid | <0.001 | Ifit3, Usp18 | - |
| GO:0019785 | ISG15-specific protease activity | <0.001 | Usp18 | - |
| GO:0032020 | ISG15-protein conjugation | <0.001 | Usp18 | - |
| GO:0001823 | Mesonephros development | 0.001 | Osr2, Gpc3 | - |
| GO:0033687 | Osteoblast proliferation | 0.002 | Osr2, Eif2ak2 | - |
| GO:0035116 | Embryonic hindlimb morphogenesis | 0.003 | Osr2, Gpc3 | - |
| GO:2000543 | Positive regulation of gastrulation | 0.008 | Osr2 | - |
| GO:0061029 | Eyelid development in camera-type eye | 0.008 | Osr2 | - |
| GO:0060272 | Embryonic skeletal joint morphogenesis | 0.008 | Osr2 | - |
| GO:0048793 | Pronephros development | 0.008 | Osr2 | - |
| GO:0030282 | Bone mineralization | 0.013 | Osr2, Gpc3 | - |
| GO:0001656 | Metanephros development | 0.013 | Osr2, Gpc3 | - |
| GO:0042474 | Middle ear morphogenesis | 0.020 | Osr2 | - |
| GO:0004221 | Ubiquitin thiolesterase activity | 0.020 | Usp18 | - |
| GO:0035115 | Embryonic forelimb morphogenesis | 0.030 | Osr2 | - |
| GO:0030501 | Positive regulation of bone mineralization | 0.030 | Osr2 | - |
| GO:0048523 | Negative regulation of cellular process | 0.036 | Slfn1, Gpc3, Ppap2b, Eif2ak2, Osr2 | Acaa2, Ddit4 |
| GO:0030163 | Protein catabolic process | 0.042 | Usp18, Gpc3 | - |
| GO:0050678 | Regulation of epithelial cell proliferation | 0.042 | Osr2, Gpc3 | - |
| GO:0043401 | Steroid hormone mediated signaling pathway | 0.042 | - | Nr1d2 |
aP-values are corrected for multiple hypotheses using Benjamini-Hochberg false discovery rate.
bFold change limit 2.0.
Number of biological replicates is 3.
GO, gene ontology. The maximum of 20 GO categories is shown.
Combined chronic and recurrent infections-enriched GO terms in the inguinal AT transcriptome
| GO:0005515 | Protein binding | <0.001 | Igk-V5, Igkv5-48, Igkv4-80, Igkv8-30, IgkV33, Igkv12-89, Igkv15-103, Igkv2-112, D6Mit97, S100a8, Ltf, LOC637260, LOC626347, Igl, Ighv1-62, Ighv6-3, LOC630305, Ighg3, Igh-4,Ighg, LOC100047788, Gm16971, Ngp, Chi3l3 | Aldh1a1, Adh7, Ddx17, Acta1, Bmp3, Igfbp6, Tnnc2, Lep, Dpt |
| GO:0003823 | Antigen binding | <0.001 | LOC100047788, Igkv5-48, Igkv2-112 | - |
| GO:0019731 | Antibacterial humoral response | 0.002 | LOC100047788 | - |
| GO:0019730 | Antimicrobial humoral response | 0.002 | LOC100047788 | - |
| GO:0051952 | Regulation of amine transport | 0.002 | - | Lep, Sncg |
| GO:0042572 | Retinol metabolic process | 0.011 | - | Aldh1a1, Adh7 |
| GO:0030534 | Adult behavior | 0.011 | - | Lep, Sncg |
| GO:0014059 | Regulation of dopamine secretion | 0.011 | - | Sncg |
| GO:0014046 | Dopamine secretion | 0.011 | - | Sncg |
| GO:0006836 | Neurotransmitter transport | 0.011 | - | Slc6a13, Sncg |
| GO:0042573 | Retinoic acid metabolic process | 0.013 | - | Aldh1a1, Adh7 |
| GO:0002455 | Humoral immune response mediated by circulating immunoglobulin | 0.016 | LOC100047788 | - |
| GO:0046928 | Regulation of neurotransmitter secretion | 0.020 | - | Sncg |
| GO:0008344 | Adult locomotory behavior | 0.042 | - | Sncg |
| GO:0032526 | Response to retinoic acid | 0.044 | - | Aldh1a1, Lep |
| GO:2000366 | Positive regulation of STAT protein import into nucleus | 0.046 | - | Lep |
| GO:0071298 | Cellular response to L-ascorbic acid | 0.046 | - | Lep |
| GO:0060587 | Regulation of lipoprotein lipid oxidation | 0.046 | - | Lep |
| GO:0051956 | Negative regulation of amino acid transport | 0.046 | - | Lep |
| GO:0034439 | Lipoprotein lipid oxidation | 0.046 | - | Lep |
aP-values are corrected for multiple hypotheses using Benjamini-Hochberg false discovery rate.
bFold change limit 2.0.
Number of biological replicates is 3.
GO, gene ontology. The maximum of 20 GO categories is shown.
infection-enriched GO terms in the epididymal AT transcriptome
| GO:0003823 | Antigen binding | <0.001 | Igk-C, LOC100047788 | - |
| GO:0019731 | Antibacterial humoral response | 0.002 | LOC100047788 | - |
| GO:0019730 | Antimicrobial humoral response | 0.002 | LOC100047788 | - |
| GO:0016064 | Immunoglobulin mediated immune response | 0.004 | LOC100047788 | Bcl6 |
| GO:0032787 | Monocarboxylic acid metabolic process | 0.006 | Pcx, Insig1, Elovl6, Scd2 | - |
| GO:0006633 | Fatty acid biosynthetic process | 0.006 | Insig1, Elovl6, Scd2 | - |
| GO:0019216 | Regulation of lipid metabolic process | 0.012 | Cidea, Insig1, Thrsp | - |
| GO:0002455 | Humoral immune response mediated by circulating immunoglobulin | 0.013 | LOC100047788 | - |
| GO:0045833 | Negative regulation of lipid metabolic process | 0.015 | Cidea, Insig1 | - |
| GO:0005515 | Protein binding | 0.022 | Slc15a2, Cidea, Thrsp, Elovl6, Lrtm1, Igk-V5, LOC384413, LOC637227, Insig1, LOC100047162, LOC669053, Igk-C, LOC100047628, LOC100047788, Ighg, Ighg3, LOC676136 | Bcl6, Itga11 |
| GO:0006641 | Triglyceride metabolic process | 0.027 | Thrsp, Insig1 | - |
| GO:0046890 | Regulation of lipid biosynthetic process | 0.032 | Thrsp, Insig1 | - |
| GO:0009611 | Response to wounding | 0.034 | Fabp4, Klf6 | Chst4, Bcl6 |
| GO:0001816 | Cytokine production | 0.045 | Fabp4, Cidea | Bcl6 |
| GO:0001818 | Negative regulation of cytokine production | 0.046 | Cidea | Bcl6 |
| GO:0051973 | Positive regulation of telomerase activity | 0.048 | 9130213B05Rik | - |
| GO:0042938 | Dipeptide transport | 0.048 | Slc15a2 | - |
| GO:0006954 | Inflammatory response | 0.049 | Fabp4 | Chst4, Bcl6 |
aP-values are corrected for multiple hypotheses using Benjamini-Hochberg false discovery rate.
bFold change limit 2.0.
Number of biological replicates is 3.
GO, gene ontology. The maximum of 20 GO categories is shown.
infection-enriched GO terms in the epididymal AT transcriptome
| GO:0009206 | Purine ribonucleoside triphosphate biosynthetic process | <0.001 | Nme7, Atp1b1, Ldhc,1600029I14Rik | - |
| GO:0006754 | ATP biosynthetic process | <0.001 | Nme7, Atp1b1, Ldhc | - |
| GO:0005391 | Sodium:potassium-exchanging ATPase activity | <0.001 | Nme7, Atp1b1 | - |
| GO:0031957 | Very long-chain fatty acid-CoA ligase activity | <0.001 | Acsbg1, Slc27a2 | - |
| GO:0030317 | Sperm motility | <0.001 | Spag6, Tnp1, Ldhc, Smcp | - |
| GO:0004467 | Long-chain fatty acid-CoA ligase activity | <0.001 | Acsbg1, Slc27a2 | - |
| GO:0006952 | Defense response | 0.003 | Ccl8, Arg2, Defb22, Cx3cl1, Nt5e, Defb29, Defb36, Defb38, Cfi, Elf3 | Ccl5, Orm1, Orm2, S100a8, Ccl11 |
| GO:0001676 | Long-chain fatty acid metabolic process | 0.003 | Acsbg1, Slc27a2 | - |
| GO:0000038 | Very long-chain fatty acid metabolic process | 0.003 | Acsbg1, Slc27a2 | - |
| GO:0006323 | DNA packaging | 0.004 | Sox9, Prm1 | Hist1h4i, Hist2h2ac, Hist1h4k, Hist1h4j, Hist1h3d |
| GO:0016338 | Calcium-independent cell-cell adhesion | 0.005 | Cldn2, Cldn11, Cx3cl1 | |
| GO:0009991 | Response to extracellular stimulus | 0.007 | Slc39a4, Mt3, Srd5a2, Sox9, Lrp2, Sfrp1, Arg2, Avpr1a | Tnfrsf11b, Ccl5, Acta1 |
| GO:0034728 | Nucleosome organization | 0.008 | Sox9, Tnp1 | Hist1h3d, Hist2h2ac, Hist1h4i, Hist1h4k, Hist1h4j |
| GO:0071345 | Cellular response to cytokine stimulus | 0.008 | Mt3, Cx3cl1, Krt18, Sox9, Krt8, Sfrp1, Arg2 | Ccl5 |
| GO:0042493 | Response to drug | 0.008 | Slc15a2, Mt3, Srd5a2, Lrp2, Sfrp1, Arg2, Slc22a1 | Tnfrsf11b, Ccl5, Cox8b |
| GO:0048245 | Eosinophil chemotaxis | 0.009 | LOC100048554 | Ccl5, Ccl11 |
| GO:0022414 | Reproductive process | 0.009 | Spag6, Sox9, 4931407G18Rik, Avpr1a, Arg2, Prm1, Tnp1, Odf2, Smcp, Acsbg1, Cldn11, Srd5a2, Mycbpap, Sfrp1 | Ccl5 |
| GO:0006333 | Chromatin assembly or disassembly | 0.009 | Sox9, Tnp1 | Hist1h3d, Hist2h2ac, Hist1h4i, Hist1h4k, Hist1h4j, |
| GO:0048609 | Multicellular organismal reproductive process | 0.010 | 4931407G18Rik, Avpr1a, Arg2, Prm1, Spag6, Smcp, Odf2, Sfrp1, Cldn11, Mycbpap, Sox9, Tnp1 | - |
| GO:0032504 | Multicellular organism reproduction | 0.010 | Sox9, 4931407G18Rik, Arg2, Prm1, Spag6, Avpr1a, Odf2, Sfrp1, Cldn11, Tnp1, Mycbpap, Smcp | - |
aP-values are corrected for multiple hypotheses using Benjamini-Hochberg false discovery rate.
bFold change limit 2.0.
Number of biological replicates is 3.
GO, gene ontology. The maximum of 20 GO categories is shown.
Combined chronic and recurrent infections-enriched GO terms in the epididymal AT transcriptome
| GO:0045653 | Negative regulation of megakaryocyte differentiation | <0.001 | - | Hist1h4h, Hist1h4i, Hist1h4k, Hist1h4j |
| GO:0006334 | Nucleosome assembly | <0.001 | Sox9 | Hist1h4j, Hist1h4i, Hist1h4k, Hist1h4h, Hist1h3d, Hist2h2ac |
| GO:0005515 | Protein binding | <0.001 | BC021891, Lrrc48, Gja1, Cldn2, Lrtm1, Pcp4l1, Cldn11, Ubd, Dynlrb2, Mt3, Clic6, Sh3gl2, Lrp2, Nme7, Slc40a1, Cxcl13, Fcgr4, Spag6, Ccl8, Sox9, Alox12, Sfrp1, Ighv1-62, Col6a5, C7, Ighg3, Ighg, LOC100047788, Igk-C, D6Mit97, Igk-V5, Igkv12-46, LOC384419, LOC637227, Igkv4-68 | Itga11, Acta1, Bmp3, Sfrp5, Hist1h4i, Hist1h4h, Hist1h4k, Wdr92, Hist1h3d, Hist1h4j |
| GO:0003823 | Antigen binding | <0.001 | LOC100047788, Igk-C | - |
| GO:0016337 | Cell-cell adhesion | 0.004 | Sox9, Cxcl13, Cldn11, 1110049B09Rik, Cldn2, Dsg2 | Chst4 |
| GO:0016338 | Calcium-independent cell-cell adhesion | 0.011 | Cldn2, Cldn11 | - |
| GO:2000117 | Negative regulation of cysteine-type endopeptidase activity | 0.016 | Sfrp1, Mt3 | - |
| GO:0019731 | Antibacterial humoral response | 0.016 | LOC100047788 | - |
| GO:0019730 | Antimicrobial humoral response | 0.016 | LOC100047788 | - |
| GO:0008219 | Cell death | 0.016 | Mt3, Alox12, Sox9, Slc40a1, Sfrp1, Acsbg1, Mmd2, Ubd, Bex2, Dsg2, Gja1 | Lyz1, Wdr92 |
| GO:0071504 | Cellular response to heparin | 0.021 | Sfrp1, Sox9 | - |
| GO:0006352 | Transcription initiation, DNA-dependent | 0.021 | - | Hist1h4h, Hist1h4i, Hist1h4k, Hist1h4j |
| GO:0019835 | Cytolysis | 0.024 | Mmd2 | Lyz1 |
| GO:0008253 | 5′-nucleotidase activity | 0.041 | Nt5e, Acpp | - |
aP-values are corrected for multiple hypotheses using Benjamini-Hochberg false discovery rate.
bFold change limit 2.0.
Number of biological replicates is 3.
GO, gene ontology. The maximum of 20 GO categories is shown.
Figure 1The expression of lipogenesis associated genes among different AT depots and infection models. The gene expression fold changes were calculated from the microarray analysis data as described in the Methods section. Differences in gene expression in the inguinal and epididymal AT transcriptomes induced by A) recurrent A. actinomycetemcomintas infection, B) chronic C. pneumoniae infection and C) combined recurrent A. actinomycetemcomintas and C. pneumoniae infections. The changes were statistically non-significant after false discovery rate correction. Acaca, acetyl-Coenzyme A carboxylase alpha; Elovl6, ELOVL family member 6, elongation of long chain fatty acids (yeast); Fasn, fatty acid synthase; Pcx, pyruvate carboxylase; Pparg, peroxisome proliferator activated receptor γ; Scd1, stearoyl-Coenzyme A desaturase 1; Scd2, stearoyl-Coenzyme A desaturase 2.
Relative changes in mRNA expression levels of selected genes in inguinal and epididymal AT
| | ||||
|---|---|---|---|---|
| -0.78 (1.96) | -0.31 (1.44) | -0.53 (1.76) | ||
| 0.671 | 0.348 | 0.020 | ||
| -0.19 (1.05) | -0.17 (1.00) | 0.02 (2.08) | ||
| 0.671 | 1.000 | 1.000 | ||
| 0.44 (1.56) | 0.25 (1.23) | 0.03 (1.36) | ||
| 0.203 | 0.061 | 0.437 | ||
| 0.57 (2.15) | 0.40 (1.94) | -0.11 (1.67) | ||
| 0.203 | 0.348 | 1.000 | ||
| 4.73 (2.99) | -1.18 (3.55) | 2.79 (6.50) | ||
| 0.003 | 0.061 | 0.437 | ||
| 4.30 (2.64) | -0.48 (3.75) | 4.04 (7.01) | ||
| 0.009 | 0.115 | 0.348 | ||
| -0.73 (1.97) | -0.41 (1.88) | -1.03 (1.46) | ||
| | | 0.020 | 0.203 | <0.001 |
| | -0.16 (0.88) | 0.60 (0.53) | -0.17 (0.99) | |
| | | 0.437 | 0.003 | 0.599 |
| | -0.39 (0.90) | 0.58 (0.76) | 0.55 (1.86) | |
| | | 0.120 | 0.034 | 0.600 |
| | -0.88 (0.70) | -0.13 (1.06) | -0.86 (0.67) | |
| | | 0.020 | 0.203 | <0.001 |
| | -0.89 (2.11) | 0.20 (2.20) | -0.24 (2.07) | |
| 0.002 | 0.203 | 0.600 | ||
aMedian Log2 fold change (IQRs) to the control mice. The control mice have been set into the value of 0.
bThe Mann–Whitney U Test with the control mice as the reference group.
Aa group, recurrent A. actinomycetemcomitans infection; Cpn group, chronic C. pneumoniae infection; Cpn + Aa group, combined recurrent A. actinomycetemcomitans and chronic C. pneumoniae infections; IQR, interquartile range; Mcp-1, monocyte chemoattractant protein 1; Mif, macrophage migration inhibitory factor, Mrc-1, mannose receptor C type 1; Mpo, myeloperoxidase; Slpi, secretory leukocyte peptidase inhibitor.
Figure 2Proportions of fatty acids in inguinal and epididymal AT. The AT FAs were analyzed by gas liquid chromatography as described in the Methods section. The results are expressed as percentage of weight normalized to 100%. Proportions of A) SFAs, B) MUFAs, and C) PUFAs in inguinal and epididymal AT. The statistical significance of differences was determined with Mann–Whitney U Test using the respective control group as the reference group. *, p <0.05; ** p <0.01; AT, adipose tissue; FA, fatty acid; MUFA, monounsaturated fatty acid; PUFA, polyunsaturated fatty acid; SFA, saturated fatty acid.
Figure 3Correlations between serum and AT parameters. Bivariate correlations were determined using the Spearman test. A) Concentration of serum free fatty acids (mg/dl) and serum LPS activity (EU), B) serum LPS activity (EU) and epididymal SFAs (wt%), C) serum LPS activity (EU) and epididymal PUFAs (wt%), and D) serum LPS activity (EU) and inguinal PUFA s(wt%). EU, ELISA units; LPS, lipopolysaccharide; PUFA, polyunsaturated fatty acid; SFA, saturated fatty acid.