Literature DB >> 24129074

Mutation in transforming growth factor beta induced protein associated with granular corneal dystrophy type 1 reduces the proteolytic susceptibility through local structural stabilization.

Jarl Underhaug1, Heidi Koldsø, Kasper Runager, Jakob Toudahl Nielsen, Charlotte S Sørensen, Torsten Kristensen, Daniel E Otzen, Henrik Karring, Anders Malmendal, Birgit Schiøtt, Jan J Enghild, Niels Chr Nielsen.   

Abstract

Hereditary mutations in the transforming growth factor beta induced (TGFBI) gene cause phenotypically distinct corneal dystrophies characterized by protein deposition in cornea. We show here that the Arg555Trp mutant of the fourth fasciclin 1 (FAS1-4) domain of the protein (TGFBIp/keratoepithelin/βig-h3), associated with granular corneal dystrophy type 1, is significantly less susceptible to proteolysis by thermolysin and trypsin than the WT domain. High-resolution liquid-state NMR of the WT and Arg555Trp mutant FAS1-4 domains revealed very similar structures except for the region around position 555. The Arg555Trp substitution causes Trp555 to be buried in an otherwise empty hydrophobic cavity of the FAS1-4 domain. The first thermolysin cleavage in the core of the FAS1-4 domain occurs on the N-terminal side of Leu558 adjacent to the Arg555 mutation. MD simulations indicated that the C-terminal end of helix α3' containing this cleavage site is less flexible in the mutant domain, explaining the observed proteolytic resistance. This structural change also alters the electrostatic properties, which may explain increased propensity of the mutant to aggregate in vitro with 2,2,2-trifluoroethanol. Based on our results we propose that the Arg555Trp mutation disrupts the normal degradation/turnover of corneal TGFBIp, leading to accumulation and increased propensity to aggregate through electrostatic interactions.
© 2013.

Entities:  

Keywords:  2,2-Dimethyl-2-silapentane-5-sulfonate; Corneal dystrophy; DSS; EMI; EMILIN-1 domain; FAS1; FAS1-4; GCD; IPTG; LB; LCD; Lysogeny broth; MD; NMR; NMR structure; OD; PDB; Protein Data Bank; Protein aggregation; Protein misfolding diseases; Proteolytic degradation; RDC; RMSD; RMSF; SUMO; TBCD; TGFBI; TGFBIp; Thiel–Behnke corneal dystrophy; Transforming growth factor beta induced protein (TGFBIp); WT; fasciclin 1 domain; fourth FAS1 domain of TGFBIp; granular corneal dystrophy; isopropyl β-d-1-thiogalactopyranoside; lattice corneal dystrophy; molecular dynamics; nuclear magnetic resonance; optical density; residual dipolar couplings; root-mean-square deviation; root-mean-square fluctuation; small ubiquitin-like modifier; transforming growth factor beta induced gene; transforming growth factor beta induced protein; wild-type

Mesh:

Substances:

Year:  2013        PMID: 24129074      PMCID: PMC4162128          DOI: 10.1016/j.bbapap.2013.10.008

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  41 in total

1.  A simple apparatus for generating stretched polyacrylamide gels, yielding uniform alignment of proteins and detergent micelles.

Authors:  J J Chou; S Gaemers; B Howder; J M Louis; A Bax
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

2.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

3.  Improved treatment of the protein backbone in empirical force fields.

Authors:  Alexander D MacKerell; Michael Feig; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2004-01-28       Impact factor: 15.419

4.  Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms.

Authors:  Jianyin Shao; Stephen W Tanner; Nephi Thompson; Thomas E Cheatham
Journal:  J Chem Theory Comput       Date:  2007-11       Impact factor: 6.006

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 6.  Chemical shift prediction for protein structure calculation and quality assessment using an optimally parameterized force field.

Authors:  Jakob T Nielsen; Hamid R Eghbalnia; Niels Chr Nielsen
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2011-05-23       Impact factor: 9.795

7.  Composition and proteolytic processing of corneal deposits associated with mutations in the TGFBI gene.

Authors:  Henrik Karring; Kasper Runager; Ida B Thøgersen; Gordon K Klintworth; Peter Højrup; Jan J Enghild
Journal:  Exp Eye Res       Date:  2011-12-03       Impact factor: 3.467

8.  Human phenotypically distinct TGFBI corneal dystrophies are linked to the stability of the fourth FAS1 domain of TGFBIp.

Authors:  Kasper Runager; Rajiv V Basaiawmoit; Taru Deva; Maria Andreasen; Zuzana Valnickova; Charlotte S Sørensen; Henrik Karring; Ida B Thøgersen; Gunna Christiansen; Jarl Underhaug; Torsten Kristensen; Niels Chr Nielsen; Gordon K Klintworth; Daniel E Otzen; Jan J Enghild
Journal:  J Biol Chem       Date:  2010-12-06       Impact factor: 5.157

9.  Expression of fibrillins and other microfibril-associated proteins in human bone and osteoblast-like cells.

Authors:  S Kitahama; M A Gibson; G Hatzinikolas; S Hay; J L Kuliwaba; A Evdokiou; G J Atkins; D M Findlay
Journal:  Bone       Date:  2000-07       Impact factor: 4.398

10.  Novel fold revealed by the structure of a FAS1 domain pair from the insect cell adhesion molecule fasciclin I.

Authors:  Naomi J Clout; Dominic Tisi; Erhard Hohenester
Journal:  Structure       Date:  2003-02       Impact factor: 5.006

View more
  13 in total

1.  Structure of phycobilisome from the red alga Griffithsia pacifica.

Authors:  Jun Zhang; Jianfei Ma; Desheng Liu; Song Qin; Shan Sun; Jindong Zhao; Sen-Fang Sui
Journal:  Nature       Date:  2017-10-18       Impact factor: 49.962

2.  Fibril Core of Transforming Growth Factor Beta-Induced Protein (TGFBIp) Facilitates Aggregation of Corneal TGFBIp.

Authors:  Charlotte S Sørensen; Kasper Runager; Carsten Scavenius; Morten M Jensen; Nadia S Nielsen; Gunna Christiansen; Steen V Petersen; Henrik Karring; Kristian W Sanggaard; Jan J Enghild
Journal:  Biochemistry       Date:  2015-05-06       Impact factor: 3.162

Review 3.  Periostin and TGF-β-induced protein: Two peas in a pod?

Authors:  Deane F Mosher; Mats W Johansson; Mary E Gillis; Douglas S Annis
Journal:  Crit Rev Biochem Mol Biol       Date:  2015-08-10       Impact factor: 8.250

Review 4.  Characteristics of corneal dystrophies: a review from clinical, histological and genetic perspectives.

Authors:  Ze-Nan Lin; Jie Chen; Hong-Ping Cui
Journal:  Int J Ophthalmol       Date:  2016-06-18       Impact factor: 1.779

5.  Early Events in the Amyloid Formation of the A546T Mutant of Transforming Growth Factor β-Induced Protein in Corneal Dystrophies Compared to the Nonfibrillating R555W and R555Q Mutants.

Authors:  Heidi Koldsø; Ole Juul Andersen; Camilla Lund Nikolajsen; Carsten Scavenius; Charlotte S Sørensen; Jarl Underhaug; Kasper Runager; Niels Chr Nielsen; Jan J Enghild; Birgit Schiøtt
Journal:  Biochemistry       Date:  2015-09-02       Impact factor: 3.162

6.  Absence of Vitamin K-Dependent γ-Carboxylation in Human Periostin Extracted from Fibrotic Lung or Secreted from a Cell Line Engineered to Optimize γ-Carboxylation.

Authors:  Douglas S Annis; Hanqing Ma; Danika M Balas; Kraig T Kumfer; Nathan Sandbo; Gregory K Potts; Joshua J Coon; Deane F Mosher
Journal:  PLoS One       Date:  2015-08-14       Impact factor: 3.240

Review 7.  Fascinating Fasciclins: A Surprisingly Widespread Family of Proteins that Mediate Interactions between the Cell Exterior and the Cell Surface.

Authors:  Georg J Seifert
Journal:  Int J Mol Sci       Date:  2018-05-31       Impact factor: 5.923

8.  Potential mechanisms of action of celastrol against rheumatoid arthritis: Transcriptomic and proteomic analysis.

Authors:  Song Xinqiang; Dai Erqin; Zhang Yu; Du Hongtao; Wang Lei; Yang Ningning
Journal:  PLoS One       Date:  2020-07-29       Impact factor: 3.240

9.  Structure-function correlation analysis of connexin50 missense mutations causing congenital cataract: electrostatic potential alteration could determine intracellular trafficking fate of mutants.

Authors:  Devroop Sarkar; Kunal Ray; Mainak Sengupta
Journal:  Biomed Res Int       Date:  2014-05-06       Impact factor: 3.411

10.  pH Induced Conformational Transitions in the Transforming Growth Factor β-Induced Protein (TGFβIp) Associated Corneal Dystrophy Mutants.

Authors:  Elavazhagan Murugan; Anandalakshmi Venkatraman; Zhou Lei; Victoria Mouvet; Rayne Rui Yi Lim; Nandhakumar Muruganantham; Eunice Goh; Gary Swee Lim Peh; Roger W Beuerman; Shyam S Chaurasia; Lakshminarayanan Rajamani; Jodhbir S Mehta
Journal:  Sci Rep       Date:  2016-03-31       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.