Literature DB >> 24125305

Minimal model for stem-cell differentiation.

Yusuke Goto1, Kunihiko Kaneko.   

Abstract

To explain the differentiation of stem cells in terms of dynamical systems theory, models of interacting cells with intracellular protein expression dynamics are analyzed and simulated. Simulations were carried out for all possible protein expression networks consisting of two genes under cell-cell interactions mediated by the diffusion of a protein. Networks that show cell differentiation are extracted and two forms of symmetric differentiation based on Turing's mechanism and asymmetric differentiation are identified. In the latter network, the intracellular protein levels show oscillatory dynamics at a single-cell level, while cell-to-cell synchronicity of the oscillation is lost with an increase in the number of cells. Differentiation to a fixed-point-type behavior follows with a further increase in the number of cells. The cell type with oscillatory dynamics corresponds to a stem cell that can both proliferate and differentiate, while the latter fixed-point type only proliferates. This differentiation is analyzed as a saddle-node bifurcation on an invariant circle, while the number ratio of each cell type is shown to be robust against perturbations due to self-consistent determination of the effective bifurcation parameter as a result of the cell-cell interaction. Complex cell differentiation is designed by combing these simple two-gene networks. The generality of the present differentiation mechanism, as well as its biological relevance, is discussed.

Mesh:

Year:  2013        PMID: 24125305     DOI: 10.1103/PhysRevE.88.032718

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  Symbiotic Cell Differentiation and Cooperative Growth in Multicellular Aggregates.

Authors:  Jumpei F Yamagishi; Nen Saito; Kunihiko Kaneko
Journal:  PLoS Comput Biol       Date:  2016-10-17       Impact factor: 4.475

2.  Pluripotency, Differentiation, and Reprogramming: A Gene Expression Dynamics Model with Epigenetic Feedback Regulation.

Authors:  Tadashi Miyamoto; Chikara Furusawa; Kunihiko Kaneko
Journal:  PLoS Comput Biol       Date:  2015-08-26       Impact factor: 4.475

3.  Evolution-development congruence in pattern formation dynamics: Bifurcations in gene expression and regulation of networks structures.

Authors:  Takahiro Kohsokabe; Kunihiko Kaneko
Journal:  J Exp Zool B Mol Dev Evol       Date:  2016-01       Impact factor: 2.656

  3 in total

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