Literature DB >> 24125291

Modeling biological tissue growth: discrete to continuum representations.

Jack D Hywood1, Emily J Hackett-Jones, Kerry A Landman.   

Abstract

There is much interest in building deterministic continuum models from discrete agent-based models governed by local stochastic rules where an agent represents a biological cell. In developmental biology, cells are able to move and undergo cell division on and within growing tissues. A growing tissue is itself made up of cells which undergo cell division, thereby providing a significant transport mechanism for other cells within it. We develop a discrete agent-based model where domain agents represent tissue cells. Each agent has the ability to undergo a proliferation event whereby an additional domain agent is incorporated into the lattice. If a probability distribution describes the waiting times between proliferation events for an individual agent, then the total length of the domain is a random variable. The average behavior of these stochastically proliferating agents defining the growing lattice is determined in terms of a Fokker-Planck equation, with an advection and diffusion term. The diffusion term differs from the one obtained Landman and Binder [J. Theor. Biol. 259, 541 (2009)] when the rate of growth of the domain is specified, but the choice of agents is random. This discrepancy is reconciled by determining a discrete-time master equation for this process and an associated asymmetric nonexclusion random walk, together with consideration of synchronous and asynchronous updating schemes. All theoretical results are confirmed with numerical simulations. This study furthers our understanding of the relationship between agent-based rules, their implementation, and their associated partial differential equations. Since tissue growth is a significant cellular transport mechanism during embryonic growth, it is important to use the correct partial differential equation description when combining with other cellular functions.

Mesh:

Year:  2013        PMID: 24125291     DOI: 10.1103/PhysRevE.88.032704

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  6 in total

Review 1.  Growth and remodelling of living tissues: perspectives, challenges and opportunities.

Authors:  Davide Ambrosi; Martine Ben Amar; Christian J Cyron; Antonio DeSimone; Alain Goriely; Jay D Humphrey; Ellen Kuhl
Journal:  J R Soc Interface       Date:  2019-08-21       Impact factor: 4.118

2.  Detection and characterization of chemotaxis without cell tracking.

Authors:  Jack D Hywood; Gregory Rice; Sophie V Pageon; Mark N Read; Maté Biro
Journal:  J R Soc Interface       Date:  2021-03-10       Impact factor: 4.118

3.  Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues.

Authors:  Patrick Smadbeck; Michael P H Stumpf
Journal:  J R Soc Interface       Date:  2016-04       Impact factor: 4.118

4.  A hierarchical Bayesian model for understanding the spatiotemporal dynamics of the intestinal epithelium.

Authors:  Oliver J Maclaren; Aimée Parker; Carmen Pin; Simon R Carding; Alastair J M Watson; Alexander G Fletcher; Helen M Byrne; Philip K Maini
Journal:  PLoS Comput Biol       Date:  2017-07-28       Impact factor: 4.475

5.  The impact of exclusion processes on angiogenesis models.

Authors:  Samara Pillay; Helen M Byrne; Philip K Maini
Journal:  J Math Biol       Date:  2018-03-06       Impact factor: 2.259

6.  A Model for Cell Proliferation in a Developing Organism.

Authors:  Philip K Pollett; Laleh Tafakori; Peter G Taylor
Journal:  J Math Biol       Date:  2022-06-25       Impact factor: 2.164

  6 in total

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