Literature DB >> 24111225

Predicting a multi-parametric probability map of active tumor extent using random forests.

Fred W Prior, Sarah J Fouke, Tammie Benzinger, Alicia Boyd, Michael Chicoine, Sharath Cholleti, Matthew Kelsey, Bart Keogh, Lauren Kim, Mikhail Milchenko, David G Politte, Stephen Tyree, Kilian Weinberger, Daniel Marcus.   

Abstract

Glioblastoma Mulitforme is highly infiltrative, making precise delineation of tumor margin difficult. Multimodality or multi-parametric MR imaging sequences promise an advantage over anatomic sequences such as post contrast enhancement as methods for determining the spatial extent of tumor involvement. In considering multi-parametric imaging sequences however, manual image segmentation and classification is time-consuming and prone to error. As a preliminary step toward integration of multi-parametric imaging into clinical assessments of primary brain tumors, we propose a machine-learning based multi-parametric approach that uses radiologist generated labels to train a classifier that is able to classify tissue on a voxel-wise basis and automatically generate a tumor segmentation. A random forests classifier was trained using a leave-one-out experimental paradigm. A simple linear classifier was also trained for comparison. The random forests classifier accurately predicted radiologist generated segmentations and tumor extent.

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Year:  2013        PMID: 24111225      PMCID: PMC4257782          DOI: 10.1109/EMBC.2013.6611038

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  11 in total

1.  Multiparametric imaging of tumor response to therapy.

Authors:  Anwar R Padhani; Kenneth A Miles
Journal:  Radiology       Date:  2010-08       Impact factor: 11.105

2.  Phenotyping of tumor biology in patients by multimodality multiparametric imaging: relationship of microcirculation, alphavbeta3 expression, and glucose metabolism.

Authors:  Stephan Metz; Carl Ganter; Sylvie Lorenzen; Sandra van Marwick; Ken Herrmann; Florian Lordick; Stephan G Nekolla; Ernst J Rummeny; Hans-Jürgen Wester; Gunnar Brix; Markus Schwaiger; Ambros J Beer
Journal:  J Nucl Med       Date:  2010-10-18       Impact factor: 10.057

3.  Prognostic significance of preoperative MRI scans in glioblastoma multiforme.

Authors:  M A Hammoud; R Sawaya; W Shi; P F Thall; N E Leeds
Journal:  J Neurooncol       Date:  1996-01       Impact factor: 4.130

4.  Efficient multilevel brain tumor segmentation with integrated bayesian model classification.

Authors:  J J Corso; E Sharon; S Dube; S El-Saden; U Sinha; A Yuille
Journal:  IEEE Trans Med Imaging       Date:  2008-05       Impact factor: 10.048

Review 5.  Inferring microstructural features and the physiological state of tissues from diffusion-weighted images.

Authors:  P J Basser
Journal:  NMR Biomed       Date:  1995 Nov-Dec       Impact factor: 4.044

6.  Quantitative imaging of perfusion using a single subtraction (QUIPSS and QUIPSS II).

Authors:  E C Wong; R B Buxton; L R Frank
Journal:  Magn Reson Med       Date:  1998-05       Impact factor: 4.668

7.  A method of comparing the areas under receiver operating characteristic curves derived from the same cases.

Authors:  J A Hanley; B J McNeil
Journal:  Radiology       Date:  1983-09       Impact factor: 11.105

Review 8.  Biology and treatment of malignant glioma.

Authors:  M D Prados; V Levin
Journal:  Semin Oncol       Date:  2000-06       Impact factor: 4.929

9.  Independent association of extent of resection with survival in patients with malignant brain astrocytoma.

Authors:  Matthew J McGirt; Kaisorn L Chaichana; Muraya Gathinji; Frank J Attenello; Khoi Than; Alessandro Olivi; Jon D Weingart; Henry Brem; Alf Redo Quiñones-Hinojosa
Journal:  J Neurosurg       Date:  2009-01       Impact factor: 5.115

10.  An objective method for combining multi-parametric MRI datasets to characterize malignant tumors.

Authors:  Kathryn M McMillan; Baxter P Rogers; Cheng Guan Koay; Angela R Laird; Ronald R Price; M Elizabeth Meyerand
Journal:  Med Phys       Date:  2007-03       Impact factor: 4.071

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  5 in total

1.  Heterogeneous Optimization Framework: Reproducible Preprocessing of Multi-Spectral Clinical MRI for Neuro-Oncology Imaging Research.

Authors:  Mikhail Milchenko; Abraham Z Snyder; Pamela LaMontagne; Joshua S Shimony; Tammie L Benzinger; Sarah Jost Fouke; Daniel S Marcus
Journal:  Neuroinformatics       Date:  2016-07

Review 2.  Current status and future role of brain PET/MRI in clinical and research settings.

Authors:  P Werner; H Barthel; A Drzezga; O Sabri
Journal:  Eur J Nucl Med Mol Imaging       Date:  2015-01-09       Impact factor: 9.236

Review 3.  Neurologic Applications of PET/MR Imaging.

Authors:  Michelle M Miller-Thomas; Tammie L S Benzinger
Journal:  Magn Reson Imaging Clin N Am       Date:  2017-01-26       Impact factor: 2.266

4.  Automatic Tumor Segmentation With a Convolutional Neural Network in Multiparametric MRI: Influence of Distortion Correction.

Authors:  Lars Bielak; Nicole Wiedenmann; Nils Henrik Nicolay; Thomas Lottner; Johannes Fischer; Hatice Bunea; Anca-Ligia Grosu; Michael Bock
Journal:  Tomography       Date:  2019-09

Review 5.  MR Image-Based Attenuation Correction of Brain PET Imaging: Review of Literature on Machine Learning Approaches for Segmentation.

Authors:  Imene Mecheter; Lejla Alic; Maysam Abbod; Abbes Amira; Jim Ji
Journal:  J Digit Imaging       Date:  2020-10       Impact factor: 4.056

  5 in total

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