| Literature DB >> 24109417 |
Justin M Lopchuk1, Gordon W Gribble, Sean P Millikan, Jerry P Jasinski.
Abstract
The 12-membered cyclo-penta-[b]indole ring system in the title compound, C13H13NO2, deviates only slightly from planarity (r.m.s. deviation = 0.051 Å). In the crystal, N-H⋯O and O-H⋯O hydrogen bonds link the mol-ecules into sheets parallel to (100). The five-membered cyclopentanone ring is in slightly distorted envelope conformation with the C atom bearing the hydroxy substituent as the flap.Entities:
Year: 2013 PMID: 24109417 PMCID: PMC3793830 DOI: 10.1107/S1600536813020527
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H13NO2 | |
| Monoclinic, | Mo |
| Cell parameters from 3528 reflections | |
| θ = 3.3–32.9° | |
| µ = 0.09 mm−1 | |
| β = 97.207 (3)° | |
| Irregular, colourless | |
| 0.44 × 0.38 × 0.34 mm |
| Agilent Xcalibur (Eos, Gemini) diffractometer | 3753 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2888 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.0416 pixels mm-1 | θmax = 33.0°, θmin = 3.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 13545 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3753 reflections | Δρmax = 0.40 e Å−3 |
| 148 parameters | Δρmin = −0.25 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.83909 (11) | 0.55666 (6) | 0.93513 (8) | 0.03008 (19) | |
| O2 | 1.13253 (11) | 0.51818 (7) | 0.82424 (8) | 0.0297 (2) | |
| H2 | 1.1552 | 0.4933 | 0.8972 | 0.045* | |
| N1 | 0.76891 (11) | 0.21451 (7) | 0.76238 (9) | 0.0246 (2) | |
| H1 | 0.7945 | 0.1602 | 0.7152 | 0.030* | |
| C1 | 0.83979 (13) | 0.31258 (8) | 0.77083 (10) | 0.0221 (2) | |
| C2 | 0.98429 (13) | 0.35821 (9) | 0.71904 (10) | 0.0233 (2) | |
| C3 | 0.98044 (14) | 0.47719 (8) | 0.77069 (10) | 0.0242 (2) | |
| H3 | 0.9398 | 0.5254 | 0.6986 | 0.029* | |
| C4 | 0.85291 (13) | 0.47926 (8) | 0.86414 (9) | 0.0230 (2) | |
| C5 | 0.76844 (13) | 0.37877 (9) | 0.85201 (10) | 0.0233 (2) | |
| C6 | 0.64335 (13) | 0.31588 (9) | 0.90039 (10) | 0.0239 (2) | |
| C7 | 0.53565 (14) | 0.33227 (11) | 0.98851 (11) | 0.0301 (2) | |
| H7 | 0.5298 | 0.4006 | 1.0290 | 0.036* | |
| C8 | 0.43771 (15) | 0.24690 (12) | 1.01561 (13) | 0.0365 (3) | |
| H8 | 0.3650 | 0.2567 | 1.0764 | 0.044* | |
| C9 | 0.44313 (15) | 0.14681 (12) | 0.95594 (14) | 0.0383 (3) | |
| H9 | 0.3739 | 0.0899 | 0.9768 | 0.046* | |
| C10 | 0.54722 (15) | 0.12837 (10) | 0.86689 (13) | 0.0333 (3) | |
| H10 | 0.5498 | 0.0604 | 0.8252 | 0.040* | |
| C11 | 0.64742 (13) | 0.21344 (9) | 0.84131 (10) | 0.0249 (2) | |
| C12 | 1.13707 (14) | 0.29740 (10) | 0.77445 (12) | 0.0309 (2) | |
| H12A | 1.2332 | 0.3343 | 0.7503 | 0.046* | |
| H12B | 1.1332 | 0.2228 | 0.7424 | 0.046* | |
| H12C | 1.1429 | 0.2961 | 0.8662 | 0.046* | |
| C13 | 0.96704 (18) | 0.35481 (12) | 0.57537 (11) | 0.0364 (3) | |
| H13A | 0.8664 | 0.3917 | 0.5411 | 0.055* | |
| H13B | 0.9636 | 0.2790 | 0.5471 | 0.055* | |
| H13C | 1.0601 | 0.3916 | 0.5460 | 0.055* |
| O1 | 0.0424 (5) | 0.0199 (4) | 0.0285 (4) | 0.0036 (3) | 0.0066 (3) | −0.0047 (3) |
| O2 | 0.0386 (5) | 0.0241 (4) | 0.0273 (4) | −0.0099 (3) | 0.0075 (3) | 0.0006 (3) |
| N1 | 0.0267 (4) | 0.0190 (4) | 0.0284 (4) | 0.0002 (3) | 0.0046 (3) | −0.0042 (3) |
| C1 | 0.0248 (5) | 0.0199 (4) | 0.0216 (4) | 0.0009 (4) | 0.0033 (3) | −0.0015 (4) |
| C2 | 0.0279 (5) | 0.0229 (5) | 0.0197 (4) | −0.0015 (4) | 0.0056 (4) | −0.0019 (4) |
| C3 | 0.0332 (6) | 0.0189 (4) | 0.0210 (5) | −0.0019 (4) | 0.0051 (4) | 0.0009 (4) |
| C4 | 0.0303 (5) | 0.0184 (4) | 0.0201 (4) | 0.0036 (4) | 0.0023 (4) | 0.0001 (3) |
| C5 | 0.0266 (5) | 0.0210 (5) | 0.0228 (5) | 0.0021 (4) | 0.0056 (4) | −0.0008 (4) |
| C6 | 0.0233 (5) | 0.0238 (5) | 0.0245 (5) | 0.0022 (4) | 0.0027 (4) | 0.0020 (4) |
| C7 | 0.0265 (5) | 0.0358 (6) | 0.0289 (5) | 0.0046 (4) | 0.0064 (4) | 0.0019 (5) |
| C8 | 0.0271 (6) | 0.0474 (7) | 0.0364 (6) | 0.0022 (5) | 0.0090 (5) | 0.0099 (6) |
| C9 | 0.0282 (6) | 0.0386 (7) | 0.0485 (8) | −0.0043 (5) | 0.0068 (5) | 0.0136 (6) |
| C10 | 0.0293 (6) | 0.0262 (6) | 0.0436 (7) | −0.0029 (4) | 0.0022 (5) | 0.0052 (5) |
| C11 | 0.0232 (5) | 0.0227 (5) | 0.0283 (5) | 0.0013 (4) | 0.0017 (4) | 0.0023 (4) |
| C12 | 0.0276 (6) | 0.0250 (5) | 0.0405 (6) | 0.0014 (4) | 0.0062 (4) | −0.0033 (5) |
| C13 | 0.0477 (7) | 0.0408 (7) | 0.0217 (5) | −0.0070 (6) | 0.0080 (5) | −0.0050 (5) |
| O1—C4 | 1.2341 (13) | C6—C11 | 1.4136 (15) |
| O2—H2 | 0.8400 | C7—H7 | 0.9500 |
| O2—C3 | 1.4122 (14) | C7—C8 | 1.3812 (19) |
| N1—H1 | 0.8800 | C8—H8 | 0.9500 |
| N1—C1 | 1.3406 (13) | C8—C9 | 1.392 (2) |
| N1—C11 | 1.3956 (14) | C9—H9 | 0.9500 |
| C1—C2 | 1.4928 (15) | C9—C10 | 1.3849 (19) |
| C1—C5 | 1.3793 (14) | C10—H10 | 0.9500 |
| C2—C3 | 1.5675 (15) | C10—C11 | 1.3854 (16) |
| C2—C12 | 1.5267 (16) | C12—H12A | 0.9800 |
| C2—C13 | 1.5313 (15) | C12—H12B | 0.9800 |
| C3—H3 | 1.0000 | C12—H12C | 0.9800 |
| C3—C4 | 1.5467 (15) | C13—H13A | 0.9800 |
| C4—C5 | 1.4194 (15) | C13—H13B | 0.9800 |
| C5—C6 | 1.4425 (15) | C13—H13C | 0.9800 |
| C6—C7 | 1.3948 (15) | ||
| C3—O2—H2 | 109.5 | C6—C7—H7 | 120.8 |
| C1—N1—H1 | 125.9 | C8—C7—C6 | 118.46 (12) |
| C1—N1—C11 | 108.15 (9) | C8—C7—H7 | 120.8 |
| C11—N1—H1 | 125.9 | C7—C8—H8 | 119.2 |
| N1—C1—C2 | 132.79 (9) | C7—C8—C9 | 121.50 (12) |
| N1—C1—C5 | 110.80 (10) | C9—C8—H8 | 119.2 |
| C5—C1—C2 | 116.19 (9) | C8—C9—H9 | 119.3 |
| C1—C2—C3 | 99.60 (8) | C10—C9—C8 | 121.45 (11) |
| C1—C2—C12 | 109.66 (9) | C10—C9—H9 | 119.3 |
| C1—C2—C13 | 112.76 (9) | C9—C10—H10 | 121.5 |
| C12—C2—C3 | 111.89 (9) | C9—C10—C11 | 117.03 (12) |
| C12—C2—C13 | 110.31 (10) | C11—C10—H10 | 121.5 |
| C13—C2—C3 | 112.23 (9) | N1—C11—C6 | 108.88 (9) |
| O2—C3—C2 | 114.89 (9) | C10—C11—N1 | 128.63 (11) |
| O2—C3—H3 | 107.5 | C10—C11—C6 | 122.44 (11) |
| O2—C3—C4 | 112.27 (8) | C2—C12—H12A | 109.5 |
| C2—C3—H3 | 107.5 | C2—C12—H12B | 109.5 |
| C4—C3—C2 | 106.90 (8) | C2—C12—H12C | 109.5 |
| C4—C3—H3 | 107.5 | H12A—C12—H12B | 109.5 |
| O1—C4—C3 | 122.49 (10) | H12A—C12—H12C | 109.5 |
| O1—C4—C5 | 130.25 (10) | H12B—C12—H12C | 109.5 |
| C5—C4—C3 | 107.22 (8) | C2—C13—H13A | 109.5 |
| C1—C5—C4 | 109.06 (9) | C2—C13—H13B | 109.5 |
| C1—C5—C6 | 107.19 (10) | C2—C13—H13C | 109.5 |
| C4—C5—C6 | 143.48 (10) | H13A—C13—H13B | 109.5 |
| C7—C6—C5 | 135.84 (11) | H13A—C13—H13C | 109.5 |
| C7—C6—C11 | 119.12 (10) | H13B—C13—H13C | 109.5 |
| C11—C6—C5 | 104.97 (9) | ||
| O1—C4—C5—C1 | −172.60 (11) | C4—C5—C6—C11 | −173.69 (15) |
| O1—C4—C5—C6 | 0.2 (2) | C5—C1—C2—C3 | −7.02 (12) |
| O2—C3—C4—O1 | 41.66 (14) | C5—C1—C2—C12 | 110.49 (11) |
| O2—C3—C4—C5 | −136.56 (9) | C5—C1—C2—C13 | −126.17 (11) |
| N1—C1—C2—C3 | 178.95 (11) | C5—C6—C7—C8 | −175.79 (12) |
| N1—C1—C2—C12 | −63.53 (15) | C5—C6—C11—N1 | 0.33 (12) |
| N1—C1—C2—C13 | 59.81 (16) | C5—C6—C11—C10 | 177.91 (11) |
| N1—C1—C5—C4 | 176.56 (9) | C6—C7—C8—C9 | −0.91 (19) |
| N1—C1—C5—C6 | 1.03 (13) | C7—C6—C11—N1 | −177.07 (10) |
| C1—N1—C11—C6 | 0.28 (12) | C7—C6—C11—C10 | 0.51 (17) |
| C1—N1—C11—C10 | −177.10 (12) | C7—C8—C9—C10 | 0.1 (2) |
| C1—C2—C3—O2 | 134.83 (9) | C8—C9—C10—C11 | 0.97 (19) |
| C1—C2—C3—C4 | 9.56 (10) | C9—C10—C11—N1 | 175.78 (11) |
| C1—C5—C6—C7 | 175.93 (13) | C9—C10—C11—C6 | −1.28 (18) |
| C1—C5—C6—C11 | −0.81 (12) | C11—N1—C1—C2 | 173.45 (11) |
| C2—C1—C5—C4 | 1.24 (13) | C11—N1—C1—C5 | −0.82 (12) |
| C2—C1—C5—C6 | −174.29 (9) | C11—C6—C7—C8 | 0.61 (17) |
| C2—C3—C4—O1 | 168.51 (10) | C12—C2—C3—O2 | 19.00 (12) |
| C2—C3—C4—C5 | −9.72 (11) | C12—C2—C3—C4 | −106.28 (10) |
| C3—C4—C5—C1 | 5.44 (12) | C13—C2—C3—O2 | −105.63 (11) |
| C3—C4—C5—C6 | 178.25 (14) | C13—C2—C3—C4 | 129.09 (10) |
| C4—C5—C6—C7 | 3.0 (3) |
| H··· | ||||
| O2—H2···O1i | 0.84 | 1.90 | 2.7245 (12) | 168 |
| N1—H1···O2ii | 0.88 | 1.91 | 2.7500 (12) | 158 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2⋯O1i | 0.84 | 1.90 | 2.7245 (12) | 168 |
| N1—H1⋯O2ii | 0.88 | 1.91 | 2.7500 (12) | 158 |
Symmetry codes: (i) ; (ii) .