| Literature DB >> 24109408 |
Chiraz Youssef1, Mohamed Belhouchet, Hamed Ben Ammar, Ridha Ben Salem.
Abstract
In the title compound, C18H18N4OS, the cyclo-hexyl ring adopts a chair conformation. The other rings of this compound lie almost in the same plane, with a mean deviation of 0.03 (2) Å from the least-squares plane defined by the 14 constituent atoms. There are intra-molecular N-H⋯N and N-H⋯O hydrogen bonds, as well as inter-molecular N-H⋯N hydrogen bonds, which link the mol-ecules into centrosymmetric dimers.Entities:
Year: 2013 PMID: 24109408 PMCID: PMC3793821 DOI: 10.1107/S1600536813019880
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H18N4OS | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2961 reflections |
| θ = 1.8–24.9° | |
| µ = 0.20 mm−1 | |
| β = 107.554 (5)° | Parallelepipedic, violet |
| 0.3 × 0.25 × 0.22 mm | |
| Bruker APEXII area-detector diffractometer | 2961 independent reflections |
| Radiation source: fine-focus sealed tube | 1904 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 24.9°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 13506 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2961 reflections | Δρmax = 0.17 e Å−3 |
| 230 parameters | Δρmin = −0.17 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0009 (2) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.55009 (3) | 0.30537 (10) | 0.19986 (3) | 0.0550 (3) | |
| O1 | 0.62688 (7) | −0.2687 (2) | 0.09537 (7) | 0.0517 (5) | |
| N1 | 0.47339 (13) | 0.5797 (5) | 0.05475 (13) | 0.0976 (10) | |
| N2 | 0.55845 (11) | 0.0864 (5) | 0.04725 (11) | 0.0593 (7) | |
| N3 | 0.61458 (10) | −0.0165 (4) | 0.26076 (9) | 0.0521 (6) | |
| N4 | 0.65779 (8) | −0.3092 (3) | 0.19499 (8) | 0.0432 (5) | |
| C1 | 0.50228 (12) | 0.4550 (5) | 0.08608 (13) | 0.0643 (8) | |
| C2 | 0.53698 (10) | 0.3009 (4) | 0.12313 (11) | 0.0501 (6) | |
| C3 | 0.56239 (10) | 0.1264 (4) | 0.10435 (11) | 0.0456 (6) | |
| C4 | 0.59338 (10) | −0.0064 (3) | 0.15318 (10) | 0.0423 (6) | |
| C5 | 0.59027 (10) | 0.0711 (3) | 0.20748 (11) | 0.0436 (6) | |
| C6 | 0.62674 (10) | −0.1949 (4) | 0.15031 (10) | 0.0422 (6) | |
| C7 | 0.66194 (10) | −0.4503 (4) | 0.10807 (11) | 0.0464 (6) | |
| C8 | 0.67552 (12) | −0.5875 (4) | 0.06869 (12) | 0.0610 (7) | |
| H8 | 0.6620 | −0.5669 | 0.0277 | 0.073* | |
| C9 | 0.71069 (12) | −0.7582 (4) | 0.09423 (14) | 0.0657 (8) | |
| H9 | 0.7211 | −0.8572 | 0.0697 | 0.079* | |
| C10 | 0.73088 (11) | −0.7869 (4) | 0.15490 (13) | 0.0607 (7) | |
| H10 | 0.7548 | −0.9039 | 0.1701 | 0.073* | |
| C11 | 0.71652 (10) | −0.6462 (4) | 0.19378 (12) | 0.0539 (7) | |
| H11 | 0.7302 | −0.6660 | 0.2348 | 0.065* | |
| C12 | 0.68079 (10) | −0.4743 (3) | 0.16885 (10) | 0.0433 (6) | |
| C13 | 0.61259 (11) | 0.0713 (4) | 0.31737 (10) | 0.0462 (6) | |
| H13 | 0.5760 | 0.1493 | 0.3105 | 0.055* | |
| C14 | 0.61355 (13) | −0.1124 (4) | 0.36007 (12) | 0.0614 (7) | |
| H14A | 0.5798 | −0.2028 | 0.3439 | 0.074* | |
| H14B | 0.6476 | −0.2005 | 0.3642 | 0.074* | |
| C15 | 0.61409 (14) | −0.0298 (4) | 0.42067 (12) | 0.0698 (8) | |
| H15A | 0.5779 | 0.0433 | 0.4173 | 0.084* | |
| H15B | 0.6173 | −0.1511 | 0.4475 | 0.084* | |
| C16 | 0.66333 (14) | 0.1232 (4) | 0.44618 (12) | 0.0736 (9) | |
| H16A | 0.6997 | 0.0473 | 0.4530 | 0.088* | |
| H16B | 0.6614 | 0.1777 | 0.4841 | 0.088* | |
| C17 | 0.66063 (15) | 0.3097 (4) | 0.40402 (12) | 0.0768 (9) | |
| H17A | 0.6934 | 0.4046 | 0.4203 | 0.092* | |
| H17B | 0.6256 | 0.3922 | 0.3997 | 0.092* | |
| C18 | 0.66133 (12) | 0.2272 (4) | 0.34334 (12) | 0.0625 (8) | |
| H18A | 0.6580 | 0.3485 | 0.3165 | 0.075* | |
| H18B | 0.6979 | 0.1559 | 0.3473 | 0.075* | |
| H1N2 | 0.5767 (13) | −0.030 (4) | 0.0372 (12) | 0.076 (10)* | |
| H2N2 | 0.5435 (12) | 0.177 (4) | 0.0194 (13) | 0.075 (10)* | |
| H1N3 | 0.6341 (11) | −0.132 (4) | 0.2608 (11) | 0.067 (9)* |
| S1 | 0.0570 (5) | 0.0570 (4) | 0.0565 (5) | 0.0136 (3) | 0.0255 (3) | 0.0145 (3) |
| O1 | 0.0574 (11) | 0.0541 (10) | 0.0389 (10) | 0.0030 (8) | 0.0075 (8) | 0.0010 (8) |
| N1 | 0.106 (2) | 0.111 (2) | 0.084 (2) | 0.0561 (18) | 0.0410 (17) | 0.0446 (17) |
| N2 | 0.0645 (16) | 0.0656 (17) | 0.0407 (16) | 0.0077 (13) | 0.0052 (12) | 0.0114 (13) |
| N3 | 0.0647 (15) | 0.0519 (14) | 0.0394 (14) | 0.0158 (11) | 0.0155 (11) | 0.0076 (11) |
| N4 | 0.0461 (12) | 0.0434 (11) | 0.0366 (12) | 0.0030 (9) | 0.0070 (9) | 0.0029 (9) |
| C1 | 0.0602 (19) | 0.0753 (19) | 0.064 (2) | 0.0181 (15) | 0.0288 (15) | 0.0232 (16) |
| C2 | 0.0437 (15) | 0.0552 (15) | 0.0529 (17) | 0.0115 (12) | 0.0168 (12) | 0.0214 (13) |
| C3 | 0.0393 (14) | 0.0542 (15) | 0.0410 (16) | −0.0047 (11) | 0.0085 (12) | 0.0104 (12) |
| C4 | 0.0433 (14) | 0.0424 (13) | 0.0383 (15) | −0.0018 (11) | 0.0078 (11) | 0.0054 (11) |
| C5 | 0.0418 (14) | 0.0443 (13) | 0.0446 (16) | −0.0004 (11) | 0.0126 (12) | 0.0072 (12) |
| C6 | 0.0422 (14) | 0.0460 (13) | 0.0370 (15) | −0.0083 (11) | 0.0096 (11) | −0.0027 (12) |
| C7 | 0.0466 (15) | 0.0455 (14) | 0.0460 (16) | −0.0011 (11) | 0.0122 (12) | −0.0024 (12) |
| C8 | 0.0661 (19) | 0.0665 (17) | 0.0491 (17) | −0.0009 (15) | 0.0154 (14) | −0.0073 (14) |
| C9 | 0.0667 (19) | 0.0626 (18) | 0.072 (2) | 0.0009 (15) | 0.0280 (17) | −0.0172 (15) |
| C10 | 0.0555 (17) | 0.0545 (16) | 0.074 (2) | 0.0063 (13) | 0.0223 (15) | 0.0004 (15) |
| C11 | 0.0540 (17) | 0.0553 (16) | 0.0504 (17) | 0.0060 (13) | 0.0124 (13) | 0.0057 (13) |
| C12 | 0.0424 (15) | 0.0441 (14) | 0.0423 (16) | −0.0066 (11) | 0.0111 (12) | −0.0022 (11) |
| C13 | 0.0537 (16) | 0.0468 (14) | 0.0431 (16) | 0.0072 (12) | 0.0221 (12) | 0.0067 (11) |
| C14 | 0.085 (2) | 0.0515 (15) | 0.0513 (18) | −0.0059 (14) | 0.0261 (15) | 0.0081 (13) |
| C15 | 0.103 (2) | 0.0629 (17) | 0.0560 (19) | 0.0047 (17) | 0.0423 (17) | 0.0149 (14) |
| C16 | 0.105 (3) | 0.0748 (19) | 0.0445 (18) | 0.0059 (18) | 0.0274 (17) | −0.0021 (15) |
| C17 | 0.109 (3) | 0.0680 (19) | 0.059 (2) | −0.0191 (17) | 0.0346 (18) | −0.0087 (16) |
| C18 | 0.078 (2) | 0.0593 (16) | 0.0576 (18) | −0.0065 (14) | 0.0325 (15) | 0.0038 (14) |
| S1—C5 | 1.727 (3) | C9—H9 | 0.9300 |
| S1—C2 | 1.740 (3) | C10—C11 | 1.383 (3) |
| O1—C6 | 1.375 (3) | C10—H10 | 0.9300 |
| O1—C7 | 1.387 (3) | C11—C12 | 1.387 (3) |
| N1—C1 | 1.150 (3) | C11—H11 | 0.9300 |
| N2—C3 | 1.343 (3) | C13—C18 | 1.506 (3) |
| N2—H1N2 | 0.92 (3) | C13—C14 | 1.515 (3) |
| N2—H2N2 | 0.86 (3) | C13—H13 | 0.9800 |
| N3—C5 | 1.332 (3) | C14—C15 | 1.514 (4) |
| N3—C13 | 1.455 (3) | C14—H14A | 0.9700 |
| N3—H1N3 | 0.86 (2) | C14—H14B | 0.9700 |
| N4—C6 | 1.304 (3) | C15—C16 | 1.502 (4) |
| N4—C12 | 1.394 (3) | C15—H15A | 0.9700 |
| C1—C2 | 1.392 (4) | C15—H15B | 0.9700 |
| C2—C3 | 1.382 (3) | C16—C17 | 1.513 (4) |
| C3—C4 | 1.430 (3) | C16—H16A | 0.9700 |
| C4—C5 | 1.391 (3) | C16—H16B | 0.9700 |
| C4—C6 | 1.434 (3) | C17—C18 | 1.524 (3) |
| C7—C8 | 1.370 (3) | C17—H17A | 0.9700 |
| C7—C12 | 1.375 (3) | C17—H17B | 0.9700 |
| C8—C9 | 1.378 (4) | C18—H18A | 0.9700 |
| C8—H8 | 0.9300 | C18—H18B | 0.9700 |
| C9—C10 | 1.377 (4) | ||
| C5—S1—C2 | 90.89 (11) | C7—C12—C11 | 119.6 (2) |
| C6—O1—C7 | 104.00 (17) | C7—C12—N4 | 109.3 (2) |
| C3—N2—H1N2 | 120.8 (18) | C11—C12—N4 | 131.2 (2) |
| C3—N2—H2N2 | 122.0 (19) | N3—C13—C18 | 111.91 (19) |
| H1N2—N2—H2N2 | 116 (3) | N3—C13—C14 | 109.3 (2) |
| C5—N3—C13 | 125.8 (2) | C18—C13—C14 | 111.0 (2) |
| C5—N3—H1N3 | 115.3 (18) | N3—C13—H13 | 108.2 |
| C13—N3—H1N3 | 118.9 (18) | C18—C13—H13 | 108.2 |
| C6—N4—C12 | 104.58 (19) | C14—C13—H13 | 108.2 |
| N1—C1—C2 | 178.9 (4) | C15—C14—C13 | 111.6 (2) |
| C3—C2—C1 | 125.4 (2) | C15—C14—H14A | 109.3 |
| C3—C2—S1 | 112.71 (17) | C13—C14—H14A | 109.3 |
| C1—C2—S1 | 121.8 (2) | C15—C14—H14B | 109.3 |
| N2—C3—C2 | 124.1 (2) | C13—C14—H14B | 109.3 |
| N2—C3—C4 | 124.2 (2) | H14A—C14—H14B | 108.0 |
| C2—C3—C4 | 111.7 (2) | C16—C15—C14 | 111.8 (2) |
| C5—C4—C3 | 112.4 (2) | C16—C15—H15A | 109.3 |
| C5—C4—C6 | 120.9 (2) | C14—C15—H15A | 109.3 |
| C3—C4—C6 | 126.7 (2) | C16—C15—H15B | 109.3 |
| N3—C5—C4 | 126.6 (2) | C14—C15—H15B | 109.3 |
| N3—C5—S1 | 121.08 (19) | H15A—C15—H15B | 107.9 |
| C4—C5—S1 | 112.33 (17) | C15—C16—C17 | 110.3 (3) |
| N4—C6—O1 | 114.6 (2) | C15—C16—H16A | 109.6 |
| N4—C6—C4 | 126.9 (2) | C17—C16—H16A | 109.6 |
| O1—C6—C4 | 118.5 (2) | C15—C16—H16B | 109.6 |
| C8—C7—C12 | 124.6 (2) | C17—C16—H16B | 109.6 |
| C8—C7—O1 | 127.8 (2) | H16A—C16—H16B | 108.1 |
| C12—C7—O1 | 107.6 (2) | C16—C17—C18 | 110.5 (2) |
| C7—C8—C9 | 115.1 (3) | C16—C17—H17A | 109.6 |
| C7—C8—H8 | 122.5 | C18—C17—H17A | 109.6 |
| C9—C8—H8 | 122.5 | C16—C17—H17B | 109.6 |
| C10—C9—C8 | 122.2 (3) | C18—C17—H17B | 109.6 |
| C10—C9—H9 | 118.9 | H17A—C17—H17B | 108.1 |
| C8—C9—H9 | 118.9 | C13—C18—C17 | 111.5 (2) |
| C9—C10—C11 | 121.7 (3) | C13—C18—H18A | 109.3 |
| C9—C10—H10 | 119.2 | C17—C18—H18A | 109.3 |
| C11—C10—H10 | 119.2 | C13—C18—H18B | 109.3 |
| C10—C11—C12 | 116.9 (2) | C17—C18—H18B | 109.3 |
| C10—C11—H11 | 121.5 | H18A—C18—H18B | 108.0 |
| C12—C11—H11 | 121.5 | ||
| N1—C1—C2—C3 | 25 (16) | C3—C4—C6—O1 | −4.7 (3) |
| N1—C1—C2—S1 | −152 (16) | C6—O1—C7—C8 | 178.5 (2) |
| C5—S1—C2—C3 | 0.11 (19) | C6—O1—C7—C12 | −0.3 (2) |
| C5—S1—C2—C1 | 177.5 (2) | C12—C7—C8—C9 | −0.1 (4) |
| C1—C2—C3—N2 | 2.4 (4) | O1—C7—C8—C9 | −178.7 (2) |
| S1—C2—C3—N2 | 179.76 (19) | C7—C8—C9—C10 | −0.5 (4) |
| C1—C2—C3—C4 | −177.6 (2) | C8—C9—C10—C11 | 0.5 (4) |
| S1—C2—C3—C4 | −0.3 (3) | C9—C10—C11—C12 | 0.0 (4) |
| N2—C3—C4—C5 | −179.7 (2) | C8—C7—C12—C11 | 0.6 (4) |
| C2—C3—C4—C5 | 0.3 (3) | O1—C7—C12—C11 | 179.46 (19) |
| N2—C3—C4—C6 | 2.7 (4) | C8—C7—C12—N4 | −178.7 (2) |
| C2—C3—C4—C6 | −177.3 (2) | O1—C7—C12—N4 | 0.2 (3) |
| C13—N3—C5—C4 | 177.6 (2) | C10—C11—C12—C7 | −0.5 (3) |
| C13—N3—C5—S1 | −2.1 (3) | C10—C11—C12—N4 | 178.6 (2) |
| C3—C4—C5—N3 | −180.0 (2) | C6—N4—C12—C7 | 0.0 (2) |
| C6—C4—C5—N3 | −2.2 (4) | C6—N4—C12—C11 | −179.1 (2) |
| C3—C4—C5—S1 | −0.2 (3) | C5—N3—C13—C18 | −88.0 (3) |
| C6—C4—C5—S1 | 177.51 (16) | C5—N3—C13—C14 | 148.6 (2) |
| C2—S1—C5—N3 | 179.8 (2) | N3—C13—C14—C15 | 177.6 (2) |
| C2—S1—C5—C4 | 0.06 (19) | C18—C13—C14—C15 | 53.7 (3) |
| C12—N4—C6—O1 | −0.3 (2) | C13—C14—C15—C16 | −55.2 (3) |
| C12—N4—C6—C4 | 179.4 (2) | C14—C15—C16—C17 | 56.8 (3) |
| C7—O1—C6—N4 | 0.4 (2) | C15—C16—C17—C18 | −57.1 (3) |
| C7—O1—C6—C4 | −179.33 (19) | N3—C13—C18—C17 | −177.2 (2) |
| C5—C4—C6—N4 | −1.7 (4) | C14—C13—C18—C17 | −54.8 (3) |
| C3—C4—C6—N4 | 175.7 (2) | C16—C17—C18—C13 | 56.8 (3) |
| C5—C4—C6—O1 | 178.0 (2) |
| H··· | ||||
| N2—H1 | 0.92 (3) | 2.13 (3) | 2.783 (4) | 127 (2) |
| N2—H2 | 0.86 (3) | 2.25 (3) | 3.088 (4) | 166 (3) |
| N3—H1 | 0.86 (2) | 2.12 (3) | 2.787 (3) | 135 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H1 | 0.92 (3) | 2.13 (3) | 2.783 (4) | 127 (2) |
| N2—H2 | 0.86 (3) | 2.25 (3) | 3.088 (4) | 166 (3) |
| N3—H1 | 0.86 (2) | 2.12 (3) | 2.787 (3) | 135 (2) |
Symmetry code: (i) .