Literature DB >> 24109408

3-Amino-4-(1,3-benzoxazol-2-yl)-5-(cyclo-hexyl-amino)-thio-phene-2-carbo-nitrile.

Chiraz Youssef1, Mohamed Belhouchet, Hamed Ben Ammar, Ridha Ben Salem.   

Abstract

In the title compound, C18H18N4OS, the cyclo-hexyl ring adopts a chair conformation. The other rings of this compound lie almost in the same plane, with a mean deviation of 0.03 (2) Å from the least-squares plane defined by the 14 constituent atoms. There are intra-molecular N-H⋯N and N-H⋯O hydrogen bonds, as well as inter-molecular N-H⋯N hydrogen bonds, which link the mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2013        PMID: 24109408      PMCID: PMC3793821          DOI: 10.1107/S1600536813019880

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological and biological activities of benzoxazole derivatives, see: Isomura et al. (1983 ▶); Cheng et al.(1993 ▶); Koci et al. (2002 ▶); Hoffman et al. (1993 ▶); Arpaci et al. (2002 ▶). For the synthesis and a similar structure, see: Youssef et al. (2011 ▶); Belhouchet et al. (2012 ▶).

Experimental

Crystal data

C18H18N4OS M = 338.42 Monoclinic, a = 24.270 (5) Å b = 6.193 (5) Å c = 23.578 (5) Å β = 107.554 (5)° V = 3379 (3) Å3 Z = 8 Mo Kα radiation μ = 0.20 mm−1 T = 293 K 0.3 × 0.25 × 0.22 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.655, T max = 0.746 13506 measured reflections 2961 independent reflections 1904 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.112 S = 1.01 2961 reflections 230 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813019880/bv2222sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019880/bv2222Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813019880/bv2222Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H18N4OSF(000) = 1424
Mr = 338.42Dx = 1.331 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2961 reflections
a = 24.270 (5) Åθ = 1.8–24.9°
b = 6.193 (5) ŵ = 0.20 mm1
c = 23.578 (5) ÅT = 293 K
β = 107.554 (5)°Parallelepipedic, violet
V = 3379 (3) Å30.3 × 0.25 × 0.22 mm
Z = 8
Bruker APEXII area-detector diffractometer2961 independent reflections
Radiation source: fine-focus sealed tube1904 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.049
φ and ω scansθmax = 24.9°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −28→27
Tmin = 0.655, Tmax = 0.746k = −7→7
13506 measured reflectionsl = −27→27
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.112w = 1/[σ2(Fo2) + (0.0502P)2 + 0.4702P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2961 reflectionsΔρmax = 0.17 e Å3
230 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0009 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.55009 (3)0.30537 (10)0.19986 (3)0.0550 (3)
O10.62688 (7)−0.2687 (2)0.09537 (7)0.0517 (5)
N10.47339 (13)0.5797 (5)0.05475 (13)0.0976 (10)
N20.55845 (11)0.0864 (5)0.04725 (11)0.0593 (7)
N30.61458 (10)−0.0165 (4)0.26076 (9)0.0521 (6)
N40.65779 (8)−0.3092 (3)0.19499 (8)0.0432 (5)
C10.50228 (12)0.4550 (5)0.08608 (13)0.0643 (8)
C20.53698 (10)0.3009 (4)0.12313 (11)0.0501 (6)
C30.56239 (10)0.1264 (4)0.10435 (11)0.0456 (6)
C40.59338 (10)−0.0064 (3)0.15318 (10)0.0423 (6)
C50.59027 (10)0.0711 (3)0.20748 (11)0.0436 (6)
C60.62674 (10)−0.1949 (4)0.15031 (10)0.0422 (6)
C70.66194 (10)−0.4503 (4)0.10807 (11)0.0464 (6)
C80.67552 (12)−0.5875 (4)0.06869 (12)0.0610 (7)
H80.6620−0.56690.02770.073*
C90.71069 (12)−0.7582 (4)0.09423 (14)0.0657 (8)
H90.7211−0.85720.06970.079*
C100.73088 (11)−0.7869 (4)0.15490 (13)0.0607 (7)
H100.7548−0.90390.17010.073*
C110.71652 (10)−0.6462 (4)0.19378 (12)0.0539 (7)
H110.7302−0.66600.23480.065*
C120.68079 (10)−0.4743 (3)0.16885 (10)0.0433 (6)
C130.61259 (11)0.0713 (4)0.31737 (10)0.0462 (6)
H130.57600.14930.31050.055*
C140.61355 (13)−0.1124 (4)0.36007 (12)0.0614 (7)
H14A0.5798−0.20280.34390.074*
H14B0.6476−0.20050.36420.074*
C150.61409 (14)−0.0298 (4)0.42067 (12)0.0698 (8)
H15A0.57790.04330.41730.084*
H15B0.6173−0.15110.44750.084*
C160.66333 (14)0.1232 (4)0.44618 (12)0.0736 (9)
H16A0.69970.04730.45300.088*
H16B0.66140.17770.48410.088*
C170.66063 (15)0.3097 (4)0.40402 (12)0.0768 (9)
H17A0.69340.40460.42030.092*
H17B0.62560.39220.39970.092*
C180.66133 (12)0.2272 (4)0.34334 (12)0.0625 (8)
H18A0.65800.34850.31650.075*
H18B0.69790.15590.34730.075*
H1N20.5767 (13)−0.030 (4)0.0372 (12)0.076 (10)*
H2N20.5435 (12)0.177 (4)0.0194 (13)0.075 (10)*
H1N30.6341 (11)−0.132 (4)0.2608 (11)0.067 (9)*
U11U22U33U12U13U23
S10.0570 (5)0.0570 (4)0.0565 (5)0.0136 (3)0.0255 (3)0.0145 (3)
O10.0574 (11)0.0541 (10)0.0389 (10)0.0030 (8)0.0075 (8)0.0010 (8)
N10.106 (2)0.111 (2)0.084 (2)0.0561 (18)0.0410 (17)0.0446 (17)
N20.0645 (16)0.0656 (17)0.0407 (16)0.0077 (13)0.0052 (12)0.0114 (13)
N30.0647 (15)0.0519 (14)0.0394 (14)0.0158 (11)0.0155 (11)0.0076 (11)
N40.0461 (12)0.0434 (11)0.0366 (12)0.0030 (9)0.0070 (9)0.0029 (9)
C10.0602 (19)0.0753 (19)0.064 (2)0.0181 (15)0.0288 (15)0.0232 (16)
C20.0437 (15)0.0552 (15)0.0529 (17)0.0115 (12)0.0168 (12)0.0214 (13)
C30.0393 (14)0.0542 (15)0.0410 (16)−0.0047 (11)0.0085 (12)0.0104 (12)
C40.0433 (14)0.0424 (13)0.0383 (15)−0.0018 (11)0.0078 (11)0.0054 (11)
C50.0418 (14)0.0443 (13)0.0446 (16)−0.0004 (11)0.0126 (12)0.0072 (12)
C60.0422 (14)0.0460 (13)0.0370 (15)−0.0083 (11)0.0096 (11)−0.0027 (12)
C70.0466 (15)0.0455 (14)0.0460 (16)−0.0011 (11)0.0122 (12)−0.0024 (12)
C80.0661 (19)0.0665 (17)0.0491 (17)−0.0009 (15)0.0154 (14)−0.0073 (14)
C90.0667 (19)0.0626 (18)0.072 (2)0.0009 (15)0.0280 (17)−0.0172 (15)
C100.0555 (17)0.0545 (16)0.074 (2)0.0063 (13)0.0223 (15)0.0004 (15)
C110.0540 (17)0.0553 (16)0.0504 (17)0.0060 (13)0.0124 (13)0.0057 (13)
C120.0424 (15)0.0441 (14)0.0423 (16)−0.0066 (11)0.0111 (12)−0.0022 (11)
C130.0537 (16)0.0468 (14)0.0431 (16)0.0072 (12)0.0221 (12)0.0067 (11)
C140.085 (2)0.0515 (15)0.0513 (18)−0.0059 (14)0.0261 (15)0.0081 (13)
C150.103 (2)0.0629 (17)0.0560 (19)0.0047 (17)0.0423 (17)0.0149 (14)
C160.105 (3)0.0748 (19)0.0445 (18)0.0059 (18)0.0274 (17)−0.0021 (15)
C170.109 (3)0.0680 (19)0.059 (2)−0.0191 (17)0.0346 (18)−0.0087 (16)
C180.078 (2)0.0593 (16)0.0576 (18)−0.0065 (14)0.0325 (15)0.0038 (14)
S1—C51.727 (3)C9—H90.9300
S1—C21.740 (3)C10—C111.383 (3)
O1—C61.375 (3)C10—H100.9300
O1—C71.387 (3)C11—C121.387 (3)
N1—C11.150 (3)C11—H110.9300
N2—C31.343 (3)C13—C181.506 (3)
N2—H1N20.92 (3)C13—C141.515 (3)
N2—H2N20.86 (3)C13—H130.9800
N3—C51.332 (3)C14—C151.514 (4)
N3—C131.455 (3)C14—H14A0.9700
N3—H1N30.86 (2)C14—H14B0.9700
N4—C61.304 (3)C15—C161.502 (4)
N4—C121.394 (3)C15—H15A0.9700
C1—C21.392 (4)C15—H15B0.9700
C2—C31.382 (3)C16—C171.513 (4)
C3—C41.430 (3)C16—H16A0.9700
C4—C51.391 (3)C16—H16B0.9700
C4—C61.434 (3)C17—C181.524 (3)
C7—C81.370 (3)C17—H17A0.9700
C7—C121.375 (3)C17—H17B0.9700
C8—C91.378 (4)C18—H18A0.9700
C8—H80.9300C18—H18B0.9700
C9—C101.377 (4)
C5—S1—C290.89 (11)C7—C12—C11119.6 (2)
C6—O1—C7104.00 (17)C7—C12—N4109.3 (2)
C3—N2—H1N2120.8 (18)C11—C12—N4131.2 (2)
C3—N2—H2N2122.0 (19)N3—C13—C18111.91 (19)
H1N2—N2—H2N2116 (3)N3—C13—C14109.3 (2)
C5—N3—C13125.8 (2)C18—C13—C14111.0 (2)
C5—N3—H1N3115.3 (18)N3—C13—H13108.2
C13—N3—H1N3118.9 (18)C18—C13—H13108.2
C6—N4—C12104.58 (19)C14—C13—H13108.2
N1—C1—C2178.9 (4)C15—C14—C13111.6 (2)
C3—C2—C1125.4 (2)C15—C14—H14A109.3
C3—C2—S1112.71 (17)C13—C14—H14A109.3
C1—C2—S1121.8 (2)C15—C14—H14B109.3
N2—C3—C2124.1 (2)C13—C14—H14B109.3
N2—C3—C4124.2 (2)H14A—C14—H14B108.0
C2—C3—C4111.7 (2)C16—C15—C14111.8 (2)
C5—C4—C3112.4 (2)C16—C15—H15A109.3
C5—C4—C6120.9 (2)C14—C15—H15A109.3
C3—C4—C6126.7 (2)C16—C15—H15B109.3
N3—C5—C4126.6 (2)C14—C15—H15B109.3
N3—C5—S1121.08 (19)H15A—C15—H15B107.9
C4—C5—S1112.33 (17)C15—C16—C17110.3 (3)
N4—C6—O1114.6 (2)C15—C16—H16A109.6
N4—C6—C4126.9 (2)C17—C16—H16A109.6
O1—C6—C4118.5 (2)C15—C16—H16B109.6
C8—C7—C12124.6 (2)C17—C16—H16B109.6
C8—C7—O1127.8 (2)H16A—C16—H16B108.1
C12—C7—O1107.6 (2)C16—C17—C18110.5 (2)
C7—C8—C9115.1 (3)C16—C17—H17A109.6
C7—C8—H8122.5C18—C17—H17A109.6
C9—C8—H8122.5C16—C17—H17B109.6
C10—C9—C8122.2 (3)C18—C17—H17B109.6
C10—C9—H9118.9H17A—C17—H17B108.1
C8—C9—H9118.9C13—C18—C17111.5 (2)
C9—C10—C11121.7 (3)C13—C18—H18A109.3
C9—C10—H10119.2C17—C18—H18A109.3
C11—C10—H10119.2C13—C18—H18B109.3
C10—C11—C12116.9 (2)C17—C18—H18B109.3
C10—C11—H11121.5H18A—C18—H18B108.0
C12—C11—H11121.5
N1—C1—C2—C325 (16)C3—C4—C6—O1−4.7 (3)
N1—C1—C2—S1−152 (16)C6—O1—C7—C8178.5 (2)
C5—S1—C2—C30.11 (19)C6—O1—C7—C12−0.3 (2)
C5—S1—C2—C1177.5 (2)C12—C7—C8—C9−0.1 (4)
C1—C2—C3—N22.4 (4)O1—C7—C8—C9−178.7 (2)
S1—C2—C3—N2179.76 (19)C7—C8—C9—C10−0.5 (4)
C1—C2—C3—C4−177.6 (2)C8—C9—C10—C110.5 (4)
S1—C2—C3—C4−0.3 (3)C9—C10—C11—C120.0 (4)
N2—C3—C4—C5−179.7 (2)C8—C7—C12—C110.6 (4)
C2—C3—C4—C50.3 (3)O1—C7—C12—C11179.46 (19)
N2—C3—C4—C62.7 (4)C8—C7—C12—N4−178.7 (2)
C2—C3—C4—C6−177.3 (2)O1—C7—C12—N40.2 (3)
C13—N3—C5—C4177.6 (2)C10—C11—C12—C7−0.5 (3)
C13—N3—C5—S1−2.1 (3)C10—C11—C12—N4178.6 (2)
C3—C4—C5—N3−180.0 (2)C6—N4—C12—C70.0 (2)
C6—C4—C5—N3−2.2 (4)C6—N4—C12—C11−179.1 (2)
C3—C4—C5—S1−0.2 (3)C5—N3—C13—C18−88.0 (3)
C6—C4—C5—S1177.51 (16)C5—N3—C13—C14148.6 (2)
C2—S1—C5—N3179.8 (2)N3—C13—C14—C15177.6 (2)
C2—S1—C5—C40.06 (19)C18—C13—C14—C1553.7 (3)
C12—N4—C6—O1−0.3 (2)C13—C14—C15—C16−55.2 (3)
C12—N4—C6—C4179.4 (2)C14—C15—C16—C1756.8 (3)
C7—O1—C6—N40.4 (2)C15—C16—C17—C18−57.1 (3)
C7—O1—C6—C4−179.33 (19)N3—C13—C18—C17−177.2 (2)
C5—C4—C6—N4−1.7 (4)C14—C13—C18—C17−54.8 (3)
C3—C4—C6—N4175.7 (2)C16—C17—C18—C1356.8 (3)
C5—C4—C6—O1178.0 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O10.92 (3)2.13 (3)2.783 (4)127 (2)
N2—H2N2···N1i0.86 (3)2.25 (3)3.088 (4)166 (3)
N3—H1N3···N40.86 (2)2.12 (3)2.787 (3)135 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N2⋯O10.92 (3)2.13 (3)2.783 (4)127 (2)
N2—H2N2⋯N1i 0.86 (3)2.25 (3)3.088 (4)166 (3)
N3—H1N3⋯N40.86 (2)2.12 (3)2.787 (3)135 (2)

Symmetry code: (i) .

  3 in total

1.  Heterocyclic benzazole derivatives with antimycobacterial in vitro activity.

Authors:  Jan Kocí; Vera Klimesová; Karel Waisser; Jarmila Kaustová; Hans-Martin Dahse; Ute Möllmann
Journal:  Bioorg Med Chem Lett       Date:  2002-11-18       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and antimicrobial activity of some 2-[p-substituted-phenyl]benzoxazol-5-yl-arylcarboxyamides.

Authors:  Ozlem Temiz-Arpaci; Esin Aki-Sener; Ismail Yalçin; Nurten Altanlar
Journal:  Arch Pharm (Weinheim)       Date:  2002-06       Impact factor: 3.751

  3 in total

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