Literature DB >> 24109403

1-[6-(3,5-Di-methyl-pyrazol-1-yl)-1,2,4,5-tetra-zin-3-yl]guanidin-2-ium perchlorate methanol monosolvate.

Yong-Peng Hu1, Biao Yan, Jie Li, Hai-Xia Ma.   

Abstract

In the title solvated salt, C8H12N9 (+)·ClO4 (-)·CH3OH, the dihedral angle between the tetra-zine and pyrazole rings is 26.05 (7)°. The two N atoms bonded to the 1,2,4,5-tetra-zine ring deviate from the plane defined by its four N atoms by 0.234 (2) and 0.186 (2) Å. There is an intra-molecular N-H⋯N hydrogen bond between the protonated guanidine fragment and one of the tetra-zine N atoms. In the crystal, two cations and two perchlorate anions are connected via N-H⋯O hydrogen bonds into centrosymmetric assemblies. These assemblies are further linked into a two-dimensional network parallel to (100) via bifurcated O-H⋯(N,N) hydrogen bonds formed with the bridging methanol mol-ecules.

Entities:  

Year:  2013        PMID: 24109403      PMCID: PMC3793816          DOI: 10.1107/S1600536813020448

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For 1,2,4,5-tetra­zine heterocycles containing strained ring systems, see: Boger & Zhang (1991 ▶); Chavez et al. (2004 ▶); Saikia et al. (2009 ▶).

Experimental

Crystal data

C8H12N9 +·ClO4 −·CH4O M = 365.76 Monoclinic, a = 12.7906 (15) Å b = 8.0149 (10) Å c = 16.644 (2) Å β = 108.305 (1)° V = 1619.9 (3) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 296 K 0.38 × 0.28 × 0.19 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.902, T max = 0.948 7710 measured reflections 2875 independent reflections 2426 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.113 S = 1.06 2875 reflections 222 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813020448/gk2585sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813020448/gk2585Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813020448/gk2585Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H12N9+·ClO4·CH4OF(000) = 760
Mr = 365.76Dx = 1.500 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3433 reflections
a = 12.7906 (15) Åθ = 2.6–25.8°
b = 8.0149 (10) ŵ = 0.28 mm1
c = 16.644 (2) ÅT = 296 K
β = 108.305 (1)°Block, yellow
V = 1619.9 (3) Å30.38 × 0.28 × 0.19 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2875 independent reflections
Radiation source: fine-focus sealed tube2426 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
phi and ω scansθmax = 25.1°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −14→15
Tmin = 0.902, Tmax = 0.948k = −9→6
7710 measured reflectionsl = −19→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.113w = 1/[σ2(Fo2) + (0.0557P)2 + 0.5826P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2875 reflectionsΔρmax = 0.24 e Å3
222 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0149 (15)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.71723 (4)0.14781 (6)0.07027 (3)0.0510 (2)
N20.67200 (16)0.7743 (2)0.19606 (13)0.0613 (5)
H2A0.67750.87250.17690.074*
H2B0.72650.73220.23530.074*
N30.56882 (13)0.5343 (2)0.19387 (11)0.0463 (4)
H30.50250.49710.18070.056*
N10.49649 (15)0.7504 (3)0.10588 (13)0.0639 (6)
H1A0.50020.84830.08580.077*
H1B0.43730.69230.08680.077*
N40.61470 (13)0.2743 (2)0.24859 (12)0.0503 (4)
N50.68994 (14)0.1634 (2)0.28457 (12)0.0524 (5)
N60.82827 (13)0.3725 (2)0.31430 (11)0.0510 (4)
N70.75184 (14)0.4852 (2)0.27682 (11)0.0516 (4)
N90.84660 (13)−0.0495 (2)0.37776 (10)0.0468 (4)
C50.93968 (17)−0.1338 (2)0.40593 (13)0.0473 (5)
C61.02667 (17)−0.0472 (3)0.39046 (14)0.0544 (5)
H61.0995−0.08240.40480.065*
C70.98545 (16)0.0966 (3)0.35103 (13)0.0513 (5)
N80.87506 (13)0.0947 (2)0.34434 (10)0.0445 (4)
O10.69859 (19)0.3153 (2)0.08793 (16)0.0991 (7)
O20.61828 (13)0.0547 (2)0.05927 (12)0.0742 (5)
O30.80093 (16)0.0795 (3)0.13929 (14)0.1041 (7)
O40.74576 (18)0.1425 (3)−0.00434 (12)0.0920 (7)
O50.36726 (13)0.4239 (2)0.10212 (12)0.0690 (5)
H50.30850.43690.11140.103*
C10.58130 (17)0.6897 (2)0.16581 (13)0.0455 (5)
C20.65001 (15)0.4300 (2)0.24091 (12)0.0421 (4)
C30.79545 (15)0.2160 (2)0.31182 (12)0.0425 (4)
C40.9443 (2)−0.3002 (3)0.44739 (16)0.0669 (7)
H4A0.8769−0.31920.45980.100*
H4B1.0050−0.30240.49900.100*
H4C0.9540−0.38580.41000.100*
C81.0389 (2)0.2301 (4)0.3155 (2)0.0821 (9)
H8A1.04510.32960.34880.123*
H8B0.99500.25280.25820.123*
H8C1.11090.19410.31660.123*
C90.3592 (3)0.2881 (5)0.0482 (3)0.1234 (15)
H9A0.42950.26810.04050.185*
H9B0.30560.3116−0.00560.185*
H9C0.33710.19100.07250.185*
U11U22U33U12U13U23
Cl0.0464 (3)0.0461 (3)0.0566 (3)−0.0045 (2)0.0103 (2)0.0036 (2)
N20.0621 (12)0.0374 (10)0.0784 (13)−0.0025 (9)0.0135 (10)0.0134 (9)
N30.0380 (8)0.0378 (9)0.0616 (10)0.0032 (7)0.0136 (8)0.0093 (8)
N10.0550 (11)0.0606 (12)0.0739 (13)0.0101 (9)0.0171 (9)0.0296 (10)
N40.0410 (9)0.0407 (9)0.0675 (11)0.0020 (7)0.0144 (8)0.0137 (8)
N50.0423 (9)0.0399 (9)0.0713 (12)0.0019 (7)0.0127 (8)0.0140 (8)
N60.0429 (9)0.0379 (9)0.0628 (11)0.0010 (7)0.0033 (8)0.0040 (8)
N70.0481 (10)0.0351 (9)0.0636 (11)0.0008 (7)0.0058 (8)0.0042 (8)
N90.0450 (9)0.0371 (9)0.0537 (10)0.0021 (7)0.0091 (7)0.0080 (7)
C50.0508 (11)0.0380 (11)0.0452 (11)0.0100 (9)0.0039 (9)−0.0030 (8)
C60.0427 (11)0.0534 (13)0.0634 (13)0.0130 (10)0.0111 (10)−0.0024 (10)
C70.0421 (11)0.0551 (13)0.0572 (12)0.0039 (10)0.0166 (9)0.0007 (10)
N80.0400 (9)0.0385 (9)0.0524 (10)0.0041 (7)0.0109 (7)0.0076 (7)
O10.1156 (17)0.0471 (10)0.152 (2)−0.0112 (11)0.0675 (16)−0.0110 (12)
O20.0597 (10)0.0659 (11)0.0934 (13)−0.0216 (9)0.0188 (9)0.0095 (9)
O30.0709 (12)0.1261 (19)0.0903 (14)0.0117 (13)−0.0106 (10)0.0277 (13)
O40.0944 (14)0.1182 (18)0.0745 (12)−0.0142 (13)0.0424 (11)−0.0052 (12)
O50.0487 (9)0.0724 (11)0.0892 (12)−0.0052 (8)0.0265 (8)−0.0270 (9)
C10.0468 (11)0.0395 (11)0.0528 (11)0.0085 (9)0.0197 (9)0.0077 (9)
C20.0407 (10)0.0365 (10)0.0489 (11)0.0022 (8)0.0138 (8)0.0040 (8)
C30.0408 (10)0.0387 (10)0.0457 (10)0.0020 (8)0.0104 (8)0.0064 (8)
C40.0700 (15)0.0437 (12)0.0730 (16)0.0112 (11)0.0026 (12)0.0095 (11)
C80.0601 (15)0.0845 (19)0.113 (2)0.0046 (14)0.0429 (15)0.0253 (17)
C90.090 (2)0.142 (3)0.149 (3)−0.019 (2)0.053 (2)−0.089 (3)
Cl—O41.4007 (19)N9—N81.381 (2)
Cl—O11.410 (2)C5—C61.402 (3)
Cl—O31.4118 (19)C5—C41.494 (3)
Cl—O21.4307 (16)C6—C71.349 (3)
N2—C11.301 (3)C6—H60.9300
N2—H2A0.8600C7—N81.381 (2)
N2—H2B0.8600C7—C81.489 (3)
N3—C11.357 (3)N8—C31.388 (2)
N3—C21.371 (2)O5—C91.394 (3)
N3—H30.8600O5—H50.8200
N1—C11.315 (3)C4—H4A0.9600
N1—H1A0.8600C4—H4B0.9600
N1—H1B0.8600C4—H4C0.9600
N4—N51.309 (2)C8—H8A0.9600
N4—C21.346 (3)C8—H8B0.9600
N5—C31.349 (3)C8—H8C0.9600
N6—C31.320 (3)C9—H9A0.9600
N6—N71.333 (2)C9—H9B0.9600
N7—C21.327 (2)C9—H9C0.9600
N9—C51.320 (2)
O4—Cl—O1108.79 (14)N9—N8—C3119.30 (15)
O4—Cl—O3111.56 (14)C7—N8—C3129.05 (17)
O1—Cl—O3109.53 (16)C9—O5—H5109.5
O4—Cl—O2109.68 (12)N2—C1—N1121.56 (19)
O1—Cl—O2108.81 (12)N2—C1—N3122.16 (19)
O3—Cl—O2108.42 (13)N1—C1—N3116.28 (19)
C1—N2—H2A120.0N7—C2—N4125.26 (17)
C1—N2—H2B120.0N7—C2—N3120.94 (17)
H2A—N2—H2B120.0N4—C2—N3113.76 (16)
C1—N3—C2127.33 (17)N6—C3—N5125.62 (18)
C1—N3—H3116.3N6—C3—N8117.78 (17)
C2—N3—H3116.3N5—C3—N8116.49 (17)
C1—N1—H1A120.0C5—C4—H4A109.5
C1—N1—H1B120.0C5—C4—H4B109.5
H1A—N1—H1B120.0H4A—C4—H4B109.5
N5—N4—C2116.91 (16)C5—C4—H4C109.5
N4—N5—C3117.09 (16)H4A—C4—H4C109.5
C3—N6—N7116.75 (16)H4B—C4—H4C109.5
C2—N7—N6117.18 (16)C7—C8—H8A109.5
C5—N9—N8104.42 (16)C7—C8—H8B109.5
N9—C5—C6111.15 (18)H8A—C8—H8B109.5
N9—C5—C4121.4 (2)C7—C8—H8C109.5
C6—C5—C4127.4 (2)H8A—C8—H8C109.5
C7—C6—C5107.51 (18)H8B—C8—H8C109.5
C7—C6—H6126.2O5—C9—H9A109.5
C5—C6—H6126.2O5—C9—H9B109.5
C6—C7—N8105.28 (19)H9A—C9—H9B109.5
C6—C7—C8130.5 (2)O5—C9—H9C109.5
N8—C7—C8124.1 (2)H9A—C9—H9C109.5
N9—N8—C7111.63 (16)H9B—C9—H9C109.5
C2—N4—N5—C31.1 (3)C2—N3—C1—N1164.5 (2)
C3—N6—N7—C20.3 (3)N6—N7—C2—N49.1 (3)
N8—N9—C5—C6−0.6 (2)N6—N7—C2—N3−173.48 (18)
N8—N9—C5—C4−179.98 (19)N5—N4—C2—N7−9.8 (3)
N9—C5—C6—C70.0 (3)N5—N4—C2—N3172.61 (18)
C4—C5—C6—C7179.3 (2)C1—N3—C2—N711.8 (3)
C5—C6—C7—N80.6 (2)C1—N3—C2—N4−170.56 (19)
C5—C6—C7—C8−175.8 (3)N7—N6—C3—N5−9.0 (3)
C5—N9—N8—C71.0 (2)N7—N6—C3—N8174.88 (17)
C5—N9—N8—C3−177.43 (17)N4—N5—C3—N68.3 (3)
C6—C7—N8—N9−1.0 (2)N4—N5—C3—N8−175.54 (17)
C8—C7—N8—N9175.7 (2)N9—N8—C3—N6151.36 (18)
C6—C7—N8—C3177.2 (2)C7—N8—C3—N6−26.8 (3)
C8—C7—N8—C3−6.0 (4)N9—N8—C3—N5−25.1 (3)
C2—N3—C1—N2−15.4 (3)C7—N8—C3—N5156.8 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.862.543.101 (3)124
O5—H5···N9ii0.822.052.866 (2)173
O5—H5···N5ii0.822.502.940 (2)114
N2—H2A···O3iii0.862.503.251 (3)146
N2—H2A···O2iii0.862.373.118 (3)146
N1—H1A···O2iii0.862.373.120 (3)146
N3—H3···O50.861.902.700 (2)153
N2—H2B···N70.862.092.713 (2)129
N1—H1B···O50.862.373.085 (3)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O2i 0.862.543.101 (3)124
O5—H5⋯N9ii 0.822.052.866 (2)173
O5—H5⋯N5ii 0.822.502.940 (2)114
N2—H2A⋯O3iii 0.862.503.251 (3)146
N2—H2A⋯O2iii 0.862.373.118 (3)146
N1—H1A⋯O2iii 0.862.373.120 (3)146
N3—H3⋯O50.861.902.700 (2)153
N2—H2B⋯N70.862.092.713 (2)129
N1—H1B⋯O50.862.373.085 (3)140

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and characterization of 3,6-bis(1H-1,2,3,4-tetrazol-5-ylamino)-1,2,4,5-tetrazine (BTATz): novel high-nitrogen content insensitive high energy material.

Authors:  A Saikia; R Sivabalan; B G Polke; G M Gore; Amarjit Singh; A Subhananda Rao; A K Sikder
Journal:  J Hazard Mater       Date:  2009-05-04       Impact factor: 10.588

  2 in total

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