| Literature DB >> 24109381 |
Ming Yang1, Chengzhi Jin, Xiaodong Zhou, Longfei Jin.
Abstract
In the title compound, C8H9N3O4, there are two mol-ecules in the asymmetric unit, one of which is in the zwitterionic form. The zwitterion contains an intra-molecular N-H⋯O hydrogen bond and the other mol-ecule contains both an intra-molecular N-H⋯O and an intra-molecular O-H⋯O hydrogen bond. In the crystal, N-H⋯O and N-H⋯N hydrogen bonds link the mol-ecules, formimg a two-dimensional network parallel to (10-1).Entities:
Year: 2013 PMID: 24109381 PMCID: PMC3793794 DOI: 10.1107/S1600536813019776
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H9N3O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 1664 reflections |
| θ = 2.9–21.8° | |
| µ = 0.13 mm−1 | |
| β = 95.25 (3)° | Block, yellow |
| 0.26 × 0.20 × 0.10 mm | |
| Bruker SMART CCD diffractometer | 3536 independent reflections |
| Radiation source: fine-focus sealed tube | 2356 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 26.0°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 11293 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3536 reflections | (Δ/σ)max = 0.026 |
| 291 parameters | Δρmax = 0.22 e Å−3 |
| 5 restraints | Δρmin = −0.18 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.5851 (3) | 0.42908 (18) | 0.18014 (13) | 0.0339 (6) | |
| C2 | 0.5537 (4) | 0.53339 (19) | 0.15979 (15) | 0.0422 (7) | |
| C3 | 0.5864 (4) | 0.6078 (2) | 0.21338 (15) | 0.0472 (7) | |
| H3 | 0.5608 | 0.6757 | 0.2021 | 0.057* | |
| C4 | 0.6544 (4) | 0.5839 (2) | 0.28124 (15) | 0.0445 (7) | |
| H4 | 0.6754 | 0.6347 | 0.3157 | 0.053* | |
| C5 | 0.6921 (3) | 0.4822 (2) | 0.29859 (14) | 0.0377 (6) | |
| C6 | 0.6547 (3) | 0.40610 (19) | 0.24911 (13) | 0.0358 (6) | |
| H6 | 0.6766 | 0.3385 | 0.2622 | 0.043* | |
| C7 | 0.5512 (3) | 0.34258 (18) | 0.12929 (13) | 0.0336 (6) | |
| C8 | 0.6571 (4) | 0.2470 (2) | −0.00925 (16) | 0.0549 (8) | |
| H8A | 0.7340 | 0.3000 | −0.0249 | 0.082* | |
| H8B | 0.6334 | 0.1979 | −0.0471 | 0.082* | |
| H8C | 0.7167 | 0.2139 | 0.0322 | 0.082* | |
| C9 | 0.3376 (3) | −0.01241 (18) | 0.22768 (14) | 0.0341 (6) | |
| C10 | 0.3287 (4) | −0.1136 (2) | 0.25337 (15) | 0.0427 (7) | |
| C11 | 0.3917 (4) | −0.1365 (2) | 0.32380 (17) | 0.0559 (8) | |
| H11 | 0.3873 | −0.2034 | 0.3400 | 0.067* | |
| C12 | 0.4595 (4) | −0.0621 (2) | 0.36920 (17) | 0.0557 (8) | |
| H12 | 0.5013 | −0.0778 | 0.4163 | 0.067* | |
| C13 | 0.4657 (4) | 0.0376 (2) | 0.34444 (14) | 0.0421 (7) | |
| C14 | 0.4053 (3) | 0.06248 (19) | 0.27498 (14) | 0.0382 (6) | |
| H14 | 0.4099 | 0.1299 | 0.2597 | 0.046* | |
| C15 | 0.2762 (3) | 0.00751 (19) | 0.15166 (14) | 0.0363 (6) | |
| C16 | 0.0855 (4) | 0.1430 (2) | 0.03122 (17) | 0.0601 (9) | |
| H16A | 0.0122 | 0.0904 | 0.0497 | 0.090* | |
| H16B | 0.0630 | 0.1455 | −0.0201 | 0.090* | |
| H16C | 0.0550 | 0.2076 | 0.0511 | 0.090* | |
| N1 | 0.5069 (3) | 0.37013 (16) | 0.06155 (12) | 0.0432 (6) | |
| H1 | 0.489 (4) | 0.4367 (15) | 0.0517 (16) | 0.072* | |
| N2 | 0.4833 (3) | 0.29164 (17) | 0.00913 (12) | 0.0400 (5) | |
| H2A | 0.420 (4) | 0.321 (2) | −0.0313 (12) | 0.072* | |
| H2B | 0.409 (4) | 0.233 (2) | 0.0275 (16) | 0.072* | |
| N3 | 0.7769 (3) | 0.45572 (19) | 0.36861 (12) | 0.0463 (6) | |
| N4 | 0.3109 (3) | 0.09987 (16) | 0.12471 (12) | 0.0422 (6) | |
| H4A | 0.393 (3) | 0.143 (2) | 0.1470 (15) | 0.072* | |
| N5 | 0.2755 (3) | 0.12117 (16) | 0.05067 (12) | 0.0421 (6) | |
| H5A | 0.306 (4) | 0.0673 (17) | 0.0315 (16) | 0.072* | |
| N6 | 0.5389 (3) | 0.1169 (2) | 0.39330 (13) | 0.0570 (7) | |
| O1 | 0.4975 (3) | 0.55896 (14) | 0.09395 (10) | 0.0593 (6) | |
| O2 | 0.5657 (3) | 0.25254 (12) | 0.14945 (10) | 0.0452 (5) | |
| O3 | 0.8350 (3) | 0.36913 (18) | 0.37959 (11) | 0.0684 (7) | |
| O4 | 0.7919 (3) | 0.52224 (16) | 0.41560 (11) | 0.0664 (6) | |
| O5 | 0.2604 (3) | −0.19058 (14) | 0.21215 (12) | 0.0598 (6) | |
| H5 | 0.223 (5) | −0.159 (3) | 0.1736 (14) | 0.090* | |
| O6 | 0.1955 (3) | −0.05861 (14) | 0.11305 (10) | 0.0507 (5) | |
| O7 | 0.5987 (4) | 0.0933 (2) | 0.45398 (13) | 0.0933 (9) | |
| O8 | 0.5409 (4) | 0.20419 (19) | 0.37205 (13) | 0.0902 (9) |
| C1 | 0.0403 (14) | 0.0276 (13) | 0.0339 (15) | 0.0005 (10) | 0.0036 (11) | 0.0025 (11) |
| C2 | 0.0498 (16) | 0.0315 (15) | 0.0446 (17) | 0.0026 (12) | 0.0010 (13) | 0.0023 (13) |
| C3 | 0.0621 (19) | 0.0282 (15) | 0.0507 (19) | 0.0000 (12) | 0.0016 (15) | −0.0019 (13) |
| C4 | 0.0556 (17) | 0.0333 (15) | 0.0443 (17) | −0.0073 (12) | 0.0033 (14) | −0.0107 (13) |
| C5 | 0.0383 (14) | 0.0418 (15) | 0.0327 (15) | −0.0069 (11) | 0.0009 (11) | −0.0009 (12) |
| C6 | 0.0388 (14) | 0.0310 (14) | 0.0373 (15) | −0.0015 (11) | 0.0013 (12) | 0.0036 (12) |
| C7 | 0.0423 (15) | 0.0271 (14) | 0.0309 (15) | 0.0015 (10) | 0.0013 (11) | 0.0042 (11) |
| C8 | 0.067 (2) | 0.0474 (17) | 0.0516 (19) | 0.0106 (15) | 0.0131 (16) | 0.0002 (15) |
| C9 | 0.0372 (14) | 0.0276 (13) | 0.0379 (15) | 0.0025 (10) | 0.0056 (11) | 0.0001 (12) |
| C10 | 0.0430 (15) | 0.0366 (15) | 0.0483 (18) | −0.0012 (12) | 0.0033 (13) | 0.0046 (13) |
| C11 | 0.064 (2) | 0.0409 (17) | 0.062 (2) | −0.0032 (14) | 0.0016 (16) | 0.0222 (16) |
| C12 | 0.0602 (19) | 0.060 (2) | 0.0470 (19) | 0.0040 (15) | 0.0020 (15) | 0.0199 (16) |
| C13 | 0.0446 (16) | 0.0467 (17) | 0.0349 (16) | 0.0002 (12) | 0.0030 (12) | 0.0007 (13) |
| C14 | 0.0461 (15) | 0.0346 (14) | 0.0341 (15) | 0.0024 (11) | 0.0046 (12) | 0.0029 (12) |
| C15 | 0.0430 (15) | 0.0285 (14) | 0.0374 (16) | 0.0007 (11) | 0.0030 (12) | −0.0033 (12) |
| C16 | 0.067 (2) | 0.057 (2) | 0.054 (2) | −0.0022 (16) | −0.0081 (16) | −0.0028 (16) |
| N1 | 0.0739 (16) | 0.0235 (11) | 0.0315 (13) | 0.0052 (11) | 0.0010 (11) | 0.0010 (10) |
| N2 | 0.0568 (15) | 0.0314 (12) | 0.0304 (13) | 0.0039 (10) | −0.0032 (11) | 0.0032 (10) |
| N3 | 0.0541 (15) | 0.0462 (15) | 0.0379 (15) | −0.0087 (12) | 0.0004 (11) | −0.0008 (12) |
| N4 | 0.0580 (15) | 0.0364 (13) | 0.0305 (13) | −0.0075 (10) | −0.0048 (11) | 0.0004 (10) |
| N5 | 0.0590 (15) | 0.0362 (13) | 0.0297 (13) | −0.0020 (11) | −0.0023 (11) | −0.0008 (10) |
| N6 | 0.0685 (17) | 0.0639 (19) | 0.0370 (16) | −0.0011 (14) | −0.0036 (13) | −0.0037 (14) |
| O1 | 0.1027 (17) | 0.0323 (10) | 0.0399 (12) | 0.0062 (10) | −0.0102 (11) | 0.0077 (9) |
| O2 | 0.0681 (13) | 0.0256 (10) | 0.0391 (11) | −0.0029 (8) | −0.0099 (9) | 0.0051 (8) |
| O3 | 0.0945 (17) | 0.0608 (15) | 0.0451 (13) | 0.0100 (13) | −0.0185 (12) | 0.0041 (11) |
| O4 | 0.0981 (17) | 0.0579 (14) | 0.0412 (13) | −0.0164 (12) | −0.0037 (12) | −0.0104 (11) |
| O5 | 0.0765 (15) | 0.0308 (11) | 0.0702 (16) | −0.0083 (10) | −0.0033 (12) | 0.0015 (11) |
| O6 | 0.0681 (13) | 0.0373 (11) | 0.0454 (12) | −0.0088 (9) | −0.0029 (10) | −0.0066 (9) |
| O7 | 0.131 (2) | 0.102 (2) | 0.0402 (14) | −0.0151 (17) | −0.0271 (14) | 0.0047 (14) |
| O8 | 0.155 (3) | 0.0508 (15) | 0.0583 (16) | −0.0083 (15) | −0.0239 (16) | −0.0097 (13) |
| C1—C6 | 1.379 (3) | C11—H11 | 0.9300 |
| C1—C2 | 1.432 (3) | C12—C13 | 1.389 (4) |
| C1—C7 | 1.487 (3) | C12—H12 | 0.9300 |
| C2—O1 | 1.308 (3) | C13—C14 | 1.375 (4) |
| C2—C3 | 1.404 (4) | C13—N6 | 1.455 (4) |
| C3—C4 | 1.359 (4) | C14—H14 | 0.9300 |
| C3—H3 | 0.9300 | C15—O6 | 1.245 (3) |
| C4—C5 | 1.394 (4) | C15—N4 | 1.345 (3) |
| C4—H4 | 0.9300 | C16—N5 | 1.445 (4) |
| C5—C6 | 1.372 (3) | C16—H16A | 0.9600 |
| C5—N3 | 1.443 (3) | C16—H16B | 0.9600 |
| C6—H6 | 0.9300 | C16—H16C | 0.9600 |
| C7—O2 | 1.240 (3) | N1—N2 | 1.421 (3) |
| C7—N1 | 1.330 (3) | N1—H1 | 0.899 (17) |
| C8—N2 | 1.479 (3) | N2—H2A | 0.937 (17) |
| C8—H8A | 0.9600 | N2—H2B | 1.02 (3) |
| C8—H8B | 0.9600 | N3—O3 | 1.224 (3) |
| C8—H8C | 0.9600 | N3—O4 | 1.236 (3) |
| C9—C14 | 1.384 (3) | N4—N5 | 1.415 (3) |
| C9—C10 | 1.414 (3) | N4—H4A | 0.903 (18) |
| C9—C15 | 1.477 (3) | N5—H5A | 0.832 (17) |
| C10—O5 | 1.340 (3) | N6—O8 | 1.212 (3) |
| C10—C11 | 1.390 (4) | N6—O7 | 1.220 (3) |
| C11—C12 | 1.359 (4) | O5—H5 | 0.854 (18) |
| C6—C1—C2 | 119.7 (2) | C13—C12—H12 | 120.4 |
| C6—C1—C7 | 117.3 (2) | C14—C13—C12 | 121.4 (3) |
| C2—C1—C7 | 123.0 (2) | C14—C13—N6 | 119.7 (2) |
| O1—C2—C3 | 121.0 (2) | C12—C13—N6 | 118.9 (3) |
| O1—C2—C1 | 121.7 (2) | C13—C14—C9 | 120.3 (2) |
| C3—C2—C1 | 117.4 (2) | C13—C14—H14 | 119.9 |
| C4—C3—C2 | 122.2 (3) | C9—C14—H14 | 119.9 |
| C4—C3—H3 | 118.9 | O6—C15—N4 | 120.4 (2) |
| C2—C3—H3 | 118.9 | O6—C15—C9 | 121.7 (2) |
| C3—C4—C5 | 119.2 (2) | N4—C15—C9 | 117.9 (2) |
| C3—C4—H4 | 120.4 | N5—C16—H16A | 109.5 |
| C5—C4—H4 | 120.4 | N5—C16—H16B | 109.5 |
| C6—C5—C4 | 121.0 (2) | H16A—C16—H16B | 109.5 |
| C6—C5—N3 | 118.8 (2) | N5—C16—H16C | 109.5 |
| C4—C5—N3 | 120.2 (2) | H16A—C16—H16C | 109.5 |
| C5—C6—C1 | 120.5 (2) | H16B—C16—H16C | 109.5 |
| C5—C6—H6 | 119.7 | C7—N1—N2 | 117.7 (2) |
| C1—C6—H6 | 119.7 | C7—N1—H1 | 119 (2) |
| O2—C7—N1 | 123.7 (2) | N2—N1—H1 | 124 (2) |
| O2—C7—C1 | 121.7 (2) | N1—N2—C8 | 113.2 (2) |
| N1—C7—C1 | 114.6 (2) | N1—N2—H2A | 106.1 (19) |
| N2—C8—H8A | 109.5 | C8—N2—H2A | 110.8 (19) |
| N2—C8—H8B | 109.5 | N1—N2—H2B | 110.2 (17) |
| H8A—C8—H8B | 109.5 | C8—N2—H2B | 106.7 (17) |
| N2—C8—H8C | 109.5 | H2A—N2—H2B | 110 (3) |
| H8A—C8—H8C | 109.5 | O3—N3—O4 | 121.8 (2) |
| H8B—C8—H8C | 109.5 | O3—N3—C5 | 119.5 (2) |
| C14—C9—C10 | 118.2 (2) | O4—N3—C5 | 118.7 (2) |
| C14—C9—C15 | 123.5 (2) | C15—N4—N5 | 121.4 (2) |
| C10—C9—C15 | 118.3 (2) | C15—N4—H4A | 122 (2) |
| O5—C10—C11 | 117.3 (2) | N5—N4—H4A | 113 (2) |
| O5—C10—C9 | 122.5 (2) | N4—N5—C16 | 111.9 (2) |
| C11—C10—C9 | 120.2 (3) | N4—N5—H5A | 103 (2) |
| C12—C11—C10 | 120.7 (3) | C16—N5—H5A | 111 (2) |
| C12—C11—H11 | 119.6 | O8—N6—O7 | 122.1 (3) |
| C10—C11—H11 | 119.6 | O8—N6—C13 | 118.9 (2) |
| C11—C12—C13 | 119.2 (3) | O7—N6—C13 | 119.1 (3) |
| C11—C12—H12 | 120.4 | C10—O5—H5 | 102 (3) |
| C6—C1—C2—O1 | 176.1 (2) | C11—C12—C13—C14 | −0.2 (4) |
| C7—C1—C2—O1 | −1.9 (4) | C11—C12—C13—N6 | −179.9 (3) |
| C6—C1—C2—C3 | −3.7 (4) | C12—C13—C14—C9 | −0.5 (4) |
| C7—C1—C2—C3 | 178.3 (2) | N6—C13—C14—C9 | 179.1 (2) |
| O1—C2—C3—C4 | −176.3 (3) | C10—C9—C14—C13 | 1.5 (4) |
| C1—C2—C3—C4 | 3.5 (4) | C15—C9—C14—C13 | −177.8 (2) |
| C2—C3—C4—C5 | −0.4 (4) | C14—C9—C15—O6 | −170.9 (2) |
| C3—C4—C5—C6 | −2.7 (4) | C10—C9—C15—O6 | 9.8 (4) |
| C3—C4—C5—N3 | 175.3 (2) | C14—C9—C15—N4 | 9.4 (4) |
| C4—C5—C6—C1 | 2.4 (4) | C10—C9—C15—N4 | −169.9 (2) |
| N3—C5—C6—C1 | −175.6 (2) | O2—C7—N1—N2 | −3.0 (4) |
| C2—C1—C6—C5 | 0.8 (4) | C1—C7—N1—N2 | 176.3 (2) |
| C7—C1—C6—C5 | 179.0 (2) | C7—N1—N2—C8 | −75.0 (3) |
| C6—C1—C7—O2 | 7.7 (4) | C6—C5—N3—O3 | 9.4 (4) |
| C2—C1—C7—O2 | −174.2 (2) | C4—C5—N3—O3 | −168.7 (3) |
| C6—C1—C7—N1 | −171.6 (2) | C6—C5—N3—O4 | −172.0 (2) |
| C2—C1—C7—N1 | 6.5 (3) | C4—C5—N3—O4 | 10.0 (4) |
| C14—C9—C10—O5 | 178.0 (2) | O6—C15—N4—N5 | −7.0 (4) |
| C15—C9—C10—O5 | −2.7 (4) | C9—C15—N4—N5 | 172.7 (2) |
| C14—C9—C10—C11 | −1.8 (4) | C15—N4—N5—C16 | 80.1 (3) |
| C15—C9—C10—C11 | 177.5 (2) | C14—C13—N6—O8 | 1.8 (4) |
| O5—C10—C11—C12 | −178.7 (3) | C12—C13—N6—O8 | −178.5 (3) |
| C9—C10—C11—C12 | 1.1 (4) | C14—C13—N6—O7 | −177.2 (3) |
| C10—C11—C12—C13 | −0.1 (4) | C12—C13—N6—O7 | 2.5 (4) |
| H··· | ||||
| N4—H4 | 0.90 (2) | 1.92 (2) | 2.756 (3) | 154 (3) |
| N1—H1···O1 | 0.90 (2) | 1.78 (2) | 2.550 (3) | 141 (3) |
| N2—H2 | 1.02 (3) | 1.84 (3) | 2.858 (3) | 174 (3) |
| O5—H5···O6 | 0.85 (2) | 1.74 (2) | 2.549 (3) | 158 (4) |
| N5—H5 | 0.83 (2) | 2.44 (3) | 2.719 (3) | 101 (2) |
| N5—H5 | 0.83 (2) | 2.46 (2) | 3.162 (3) | 143 (3) |
| N2—H2 | 0.94 (2) | 2.61 (3) | 3.296 (3) | 130 (2) |
| N2—H2 | 0.94 (2) | 2.08 (3) | 2.762 (3) | 128 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N4—H4 | 0.90 (2) | 1.92 (2) | 2.756 (3) | 154 (3) |
| N1—H1⋯O1 | 0.90 (2) | 1.78 (2) | 2.550 (3) | 141 (3) |
| N2—H2 | 1.02 (3) | 1.84 (3) | 2.858 (3) | 174 (3) |
| O5—H5⋯O6 | 0.85 (2) | 1.74 (2) | 2.549 (3) | 158 (4) |
| N5—H5 | 0.83 (2) | 2.44 (3) | 2.719 (3) | 101 (2) |
| N5—H5 | 0.83 (2) | 2.46 (2) | 3.162 (3) | 143 (3) |
| N2—H2 | 0.94 (2) | 2.08 (3) | 2.762 (3) | 128 (2) |
Symmetry codes: (i) ; (ii) .