Literature DB >> 24109381

2-Hy-droxy-N'-methyl-5-nitro-benzohydrazide.

Ming Yang1, Chengzhi Jin, Xiaodong Zhou, Longfei Jin.   

Abstract

In the title compound, C8H9N3O4, there are two mol-ecules in the asymmetric unit, one of which is in the zwitterionic form. The zwitterion contains an intra-molecular N-H⋯O hydrogen bond and the other mol-ecule contains both an intra-molecular N-H⋯O and an intra-molecular O-H⋯O hydrogen bond. In the crystal, N-H⋯O and N-H⋯N hydrogen bonds link the mol-ecules, formimg a two-dimensional network parallel to (10-1).

Entities:  

Year:  2013        PMID: 24109381      PMCID: PMC3793794          DOI: 10.1107/S1600536813019776

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities of salicylhydrazide derivatives, see: Bagchi et al. (2004 ▶); Thompson et al. (2004 ▶); Al-Mawsawi et al. (2007 ▶). For metal complexes involving derivatives of the title compound, see: Jin et al. (2006a ▶,b ▶). For related crystal structures, see: Liu et al. (2006 ▶); Luo et al. (2007 ▶); Xu & Liu (2006 ▶); Zhang (2012 ▶).

Experimental

Crystal data

C8H9N3O4 M = 211.18 Monoclinic, a = 7.3818 (15) Å b = 13.106 (3) Å c = 18.719 (4) Å β = 95.25 (3)° V = 1803.4 (6) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.26 × 0.20 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.968, T max = 0.987 11293 measured reflections 3536 independent reflections 2356 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.142 S = 1.06 3536 reflections 291 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813019776/lh5633sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019776/lh5633Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813019776/lh5633Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H9N3O4F(000) = 880
Mr = 211.18Dx = 1.556 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1664 reflections
a = 7.3818 (15) Åθ = 2.9–21.8°
b = 13.106 (3) ŵ = 0.13 mm1
c = 18.719 (4) ÅT = 293 K
β = 95.25 (3)°Block, yellow
V = 1803.4 (6) Å30.26 × 0.20 × 0.10 mm
Z = 8
Bruker SMART CCD diffractometer3536 independent reflections
Radiation source: fine-focus sealed tube2356 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.044
φ and ω scansθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.968, Tmax = 0.987k = −15→16
11293 measured reflectionsl = −23→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0565P)2 + 0.5317P] where P = (Fo2 + 2Fc2)/3
3536 reflections(Δ/σ)max = 0.026
291 parametersΔρmax = 0.22 e Å3
5 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5851 (3)0.42908 (18)0.18014 (13)0.0339 (6)
C20.5537 (4)0.53339 (19)0.15979 (15)0.0422 (7)
C30.5864 (4)0.6078 (2)0.21338 (15)0.0472 (7)
H30.56080.67570.20210.057*
C40.6544 (4)0.5839 (2)0.28124 (15)0.0445 (7)
H40.67540.63470.31570.053*
C50.6921 (3)0.4822 (2)0.29859 (14)0.0377 (6)
C60.6547 (3)0.40610 (19)0.24911 (13)0.0358 (6)
H60.67660.33850.26220.043*
C70.5512 (3)0.34258 (18)0.12929 (13)0.0336 (6)
C80.6571 (4)0.2470 (2)−0.00925 (16)0.0549 (8)
H8A0.73400.3000−0.02490.082*
H8B0.63340.1979−0.04710.082*
H8C0.71670.21390.03220.082*
C90.3376 (3)−0.01241 (18)0.22768 (14)0.0341 (6)
C100.3287 (4)−0.1136 (2)0.25337 (15)0.0427 (7)
C110.3917 (4)−0.1365 (2)0.32380 (17)0.0559 (8)
H110.3873−0.20340.34000.067*
C120.4595 (4)−0.0621 (2)0.36920 (17)0.0557 (8)
H120.5013−0.07780.41630.067*
C130.4657 (4)0.0376 (2)0.34444 (14)0.0421 (7)
C140.4053 (3)0.06248 (19)0.27498 (14)0.0382 (6)
H140.40990.12990.25970.046*
C150.2762 (3)0.00751 (19)0.15166 (14)0.0363 (6)
C160.0855 (4)0.1430 (2)0.03122 (17)0.0601 (9)
H16A0.01220.09040.04970.090*
H16B0.06300.1455−0.02010.090*
H16C0.05500.20760.05110.090*
N10.5069 (3)0.37013 (16)0.06155 (12)0.0432 (6)
H10.489 (4)0.4367 (15)0.0517 (16)0.072*
N20.4833 (3)0.29164 (17)0.00913 (12)0.0400 (5)
H2A0.420 (4)0.321 (2)−0.0313 (12)0.072*
H2B0.409 (4)0.233 (2)0.0275 (16)0.072*
N30.7769 (3)0.45572 (19)0.36861 (12)0.0463 (6)
N40.3109 (3)0.09987 (16)0.12471 (12)0.0422 (6)
H4A0.393 (3)0.143 (2)0.1470 (15)0.072*
N50.2755 (3)0.12117 (16)0.05067 (12)0.0421 (6)
H5A0.306 (4)0.0673 (17)0.0315 (16)0.072*
N60.5389 (3)0.1169 (2)0.39330 (13)0.0570 (7)
O10.4975 (3)0.55896 (14)0.09395 (10)0.0593 (6)
O20.5657 (3)0.25254 (12)0.14945 (10)0.0452 (5)
O30.8350 (3)0.36913 (18)0.37959 (11)0.0684 (7)
O40.7919 (3)0.52224 (16)0.41560 (11)0.0664 (6)
O50.2604 (3)−0.19058 (14)0.21215 (12)0.0598 (6)
H50.223 (5)−0.159 (3)0.1736 (14)0.090*
O60.1955 (3)−0.05861 (14)0.11305 (10)0.0507 (5)
O70.5987 (4)0.0933 (2)0.45398 (13)0.0933 (9)
O80.5409 (4)0.20419 (19)0.37205 (13)0.0902 (9)
U11U22U33U12U13U23
C10.0403 (14)0.0276 (13)0.0339 (15)0.0005 (10)0.0036 (11)0.0025 (11)
C20.0498 (16)0.0315 (15)0.0446 (17)0.0026 (12)0.0010 (13)0.0023 (13)
C30.0621 (19)0.0282 (15)0.0507 (19)0.0000 (12)0.0016 (15)−0.0019 (13)
C40.0556 (17)0.0333 (15)0.0443 (17)−0.0073 (12)0.0033 (14)−0.0107 (13)
C50.0383 (14)0.0418 (15)0.0327 (15)−0.0069 (11)0.0009 (11)−0.0009 (12)
C60.0388 (14)0.0310 (14)0.0373 (15)−0.0015 (11)0.0013 (12)0.0036 (12)
C70.0423 (15)0.0271 (14)0.0309 (15)0.0015 (10)0.0013 (11)0.0042 (11)
C80.067 (2)0.0474 (17)0.0516 (19)0.0106 (15)0.0131 (16)0.0002 (15)
C90.0372 (14)0.0276 (13)0.0379 (15)0.0025 (10)0.0056 (11)0.0001 (12)
C100.0430 (15)0.0366 (15)0.0483 (18)−0.0012 (12)0.0033 (13)0.0046 (13)
C110.064 (2)0.0409 (17)0.062 (2)−0.0032 (14)0.0016 (16)0.0222 (16)
C120.0602 (19)0.060 (2)0.0470 (19)0.0040 (15)0.0020 (15)0.0199 (16)
C130.0446 (16)0.0467 (17)0.0349 (16)0.0002 (12)0.0030 (12)0.0007 (13)
C140.0461 (15)0.0346 (14)0.0341 (15)0.0024 (11)0.0046 (12)0.0029 (12)
C150.0430 (15)0.0285 (14)0.0374 (16)0.0007 (11)0.0030 (12)−0.0033 (12)
C160.067 (2)0.057 (2)0.054 (2)−0.0022 (16)−0.0081 (16)−0.0028 (16)
N10.0739 (16)0.0235 (11)0.0315 (13)0.0052 (11)0.0010 (11)0.0010 (10)
N20.0568 (15)0.0314 (12)0.0304 (13)0.0039 (10)−0.0032 (11)0.0032 (10)
N30.0541 (15)0.0462 (15)0.0379 (15)−0.0087 (12)0.0004 (11)−0.0008 (12)
N40.0580 (15)0.0364 (13)0.0305 (13)−0.0075 (10)−0.0048 (11)0.0004 (10)
N50.0590 (15)0.0362 (13)0.0297 (13)−0.0020 (11)−0.0023 (11)−0.0008 (10)
N60.0685 (17)0.0639 (19)0.0370 (16)−0.0011 (14)−0.0036 (13)−0.0037 (14)
O10.1027 (17)0.0323 (10)0.0399 (12)0.0062 (10)−0.0102 (11)0.0077 (9)
O20.0681 (13)0.0256 (10)0.0391 (11)−0.0029 (8)−0.0099 (9)0.0051 (8)
O30.0945 (17)0.0608 (15)0.0451 (13)0.0100 (13)−0.0185 (12)0.0041 (11)
O40.0981 (17)0.0579 (14)0.0412 (13)−0.0164 (12)−0.0037 (12)−0.0104 (11)
O50.0765 (15)0.0308 (11)0.0702 (16)−0.0083 (10)−0.0033 (12)0.0015 (11)
O60.0681 (13)0.0373 (11)0.0454 (12)−0.0088 (9)−0.0029 (10)−0.0066 (9)
O70.131 (2)0.102 (2)0.0402 (14)−0.0151 (17)−0.0271 (14)0.0047 (14)
O80.155 (3)0.0508 (15)0.0583 (16)−0.0083 (15)−0.0239 (16)−0.0097 (13)
C1—C61.379 (3)C11—H110.9300
C1—C21.432 (3)C12—C131.389 (4)
C1—C71.487 (3)C12—H120.9300
C2—O11.308 (3)C13—C141.375 (4)
C2—C31.404 (4)C13—N61.455 (4)
C3—C41.359 (4)C14—H140.9300
C3—H30.9300C15—O61.245 (3)
C4—C51.394 (4)C15—N41.345 (3)
C4—H40.9300C16—N51.445 (4)
C5—C61.372 (3)C16—H16A0.9600
C5—N31.443 (3)C16—H16B0.9600
C6—H60.9300C16—H16C0.9600
C7—O21.240 (3)N1—N21.421 (3)
C7—N11.330 (3)N1—H10.899 (17)
C8—N21.479 (3)N2—H2A0.937 (17)
C8—H8A0.9600N2—H2B1.02 (3)
C8—H8B0.9600N3—O31.224 (3)
C8—H8C0.9600N3—O41.236 (3)
C9—C141.384 (3)N4—N51.415 (3)
C9—C101.414 (3)N4—H4A0.903 (18)
C9—C151.477 (3)N5—H5A0.832 (17)
C10—O51.340 (3)N6—O81.212 (3)
C10—C111.390 (4)N6—O71.220 (3)
C11—C121.359 (4)O5—H50.854 (18)
C6—C1—C2119.7 (2)C13—C12—H12120.4
C6—C1—C7117.3 (2)C14—C13—C12121.4 (3)
C2—C1—C7123.0 (2)C14—C13—N6119.7 (2)
O1—C2—C3121.0 (2)C12—C13—N6118.9 (3)
O1—C2—C1121.7 (2)C13—C14—C9120.3 (2)
C3—C2—C1117.4 (2)C13—C14—H14119.9
C4—C3—C2122.2 (3)C9—C14—H14119.9
C4—C3—H3118.9O6—C15—N4120.4 (2)
C2—C3—H3118.9O6—C15—C9121.7 (2)
C3—C4—C5119.2 (2)N4—C15—C9117.9 (2)
C3—C4—H4120.4N5—C16—H16A109.5
C5—C4—H4120.4N5—C16—H16B109.5
C6—C5—C4121.0 (2)H16A—C16—H16B109.5
C6—C5—N3118.8 (2)N5—C16—H16C109.5
C4—C5—N3120.2 (2)H16A—C16—H16C109.5
C5—C6—C1120.5 (2)H16B—C16—H16C109.5
C5—C6—H6119.7C7—N1—N2117.7 (2)
C1—C6—H6119.7C7—N1—H1119 (2)
O2—C7—N1123.7 (2)N2—N1—H1124 (2)
O2—C7—C1121.7 (2)N1—N2—C8113.2 (2)
N1—C7—C1114.6 (2)N1—N2—H2A106.1 (19)
N2—C8—H8A109.5C8—N2—H2A110.8 (19)
N2—C8—H8B109.5N1—N2—H2B110.2 (17)
H8A—C8—H8B109.5C8—N2—H2B106.7 (17)
N2—C8—H8C109.5H2A—N2—H2B110 (3)
H8A—C8—H8C109.5O3—N3—O4121.8 (2)
H8B—C8—H8C109.5O3—N3—C5119.5 (2)
C14—C9—C10118.2 (2)O4—N3—C5118.7 (2)
C14—C9—C15123.5 (2)C15—N4—N5121.4 (2)
C10—C9—C15118.3 (2)C15—N4—H4A122 (2)
O5—C10—C11117.3 (2)N5—N4—H4A113 (2)
O5—C10—C9122.5 (2)N4—N5—C16111.9 (2)
C11—C10—C9120.2 (3)N4—N5—H5A103 (2)
C12—C11—C10120.7 (3)C16—N5—H5A111 (2)
C12—C11—H11119.6O8—N6—O7122.1 (3)
C10—C11—H11119.6O8—N6—C13118.9 (2)
C11—C12—C13119.2 (3)O7—N6—C13119.1 (3)
C11—C12—H12120.4C10—O5—H5102 (3)
C6—C1—C2—O1176.1 (2)C11—C12—C13—C14−0.2 (4)
C7—C1—C2—O1−1.9 (4)C11—C12—C13—N6−179.9 (3)
C6—C1—C2—C3−3.7 (4)C12—C13—C14—C9−0.5 (4)
C7—C1—C2—C3178.3 (2)N6—C13—C14—C9179.1 (2)
O1—C2—C3—C4−176.3 (3)C10—C9—C14—C131.5 (4)
C1—C2—C3—C43.5 (4)C15—C9—C14—C13−177.8 (2)
C2—C3—C4—C5−0.4 (4)C14—C9—C15—O6−170.9 (2)
C3—C4—C5—C6−2.7 (4)C10—C9—C15—O69.8 (4)
C3—C4—C5—N3175.3 (2)C14—C9—C15—N49.4 (4)
C4—C5—C6—C12.4 (4)C10—C9—C15—N4−169.9 (2)
N3—C5—C6—C1−175.6 (2)O2—C7—N1—N2−3.0 (4)
C2—C1—C6—C50.8 (4)C1—C7—N1—N2176.3 (2)
C7—C1—C6—C5179.0 (2)C7—N1—N2—C8−75.0 (3)
C6—C1—C7—O27.7 (4)C6—C5—N3—O39.4 (4)
C2—C1—C7—O2−174.2 (2)C4—C5—N3—O3−168.7 (3)
C6—C1—C7—N1−171.6 (2)C6—C5—N3—O4−172.0 (2)
C2—C1—C7—N16.5 (3)C4—C5—N3—O410.0 (4)
C14—C9—C10—O5178.0 (2)O6—C15—N4—N5−7.0 (4)
C15—C9—C10—O5−2.7 (4)C9—C15—N4—N5172.7 (2)
C14—C9—C10—C11−1.8 (4)C15—N4—N5—C1680.1 (3)
C15—C9—C10—C11177.5 (2)C14—C13—N6—O81.8 (4)
O5—C10—C11—C12−178.7 (3)C12—C13—N6—O8−178.5 (3)
C9—C10—C11—C121.1 (4)C14—C13—N6—O7−177.2 (3)
C10—C11—C12—C13−0.1 (4)C12—C13—N6—O72.5 (4)
D—H···AD—HH···AD···AD—H···A
N4—H4A···O20.90 (2)1.92 (2)2.756 (3)154 (3)
N1—H1···O10.90 (2)1.78 (2)2.550 (3)141 (3)
N2—H2B···N51.02 (3)1.84 (3)2.858 (3)174 (3)
O5—H5···O60.85 (2)1.74 (2)2.549 (3)158 (4)
N5—H5A···O60.83 (2)2.44 (3)2.719 (3)101 (2)
N5—H5A···O4i0.83 (2)2.46 (2)3.162 (3)143 (3)
N2—H2A···O7i0.94 (2)2.61 (3)3.296 (3)130 (2)
N2—H2A···O1ii0.94 (2)2.08 (3)2.762 (3)128 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H4A⋯O20.90 (2)1.92 (2)2.756 (3)154 (3)
N1—H1⋯O10.90 (2)1.78 (2)2.550 (3)141 (3)
N2—H2B⋯N51.02 (3)1.84 (3)2.858 (3)174 (3)
O5—H5⋯O60.85 (2)1.74 (2)2.549 (3)158 (4)
N5—H5A⋯O60.83 (2)2.44 (3)2.719 (3)101 (2)
N5—H5A⋯O4i 0.83 (2)2.46 (2)3.162 (3)143 (3)
N2—H2A⋯O1ii 0.94 (2)2.08 (3)2.762 (3)128 (2)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Discovery of novel non-cytotoxic salicylhydrazide containing HIV-1 integrase inhibitors.

Authors:  Laith Q Al-Mawsawi; Raveendra Dayam; Laleh Taheri; Myriam Witvrouw; Zeger Debyser; Nouri Neamati
Journal:  Bioorg Med Chem Lett       Date:  2007-10-10       Impact factor: 2.823

3.  Salicylidene salicylhydrazide, a selective inhibitor of beta 1-containing GABAA receptors.

Authors:  S A Thompson; L Wheat; N A Brown; P B Wingrove; G V Pillai; P J Whiting; C Adkins; C H Woodward; A J Smith; P B Simpson; I Collins; K A Wafford
Journal:  Br J Pharmacol       Date:  2004-04-20       Impact factor: 8.739

4.  2-Hy-droxy-N'-methyl-benzohydrazide.

Authors:  Xinwen Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-11

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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