| Literature DB >> 24109366 |
R Sandhya1, M Sithambaresan, S Prathapan, M R Prathapachandra Kurup.
Abstract
The phenyl and tert-butyl groups of the title compound, C27H25NO3, exhibit a trans configuration in agreement with the stereochemistry of the Z phenyl-N-tert-butyl-nitrone starting material. The attached carbonyl groups are not coplanar with the neighboring di-hydro-isoxazole ring and the phenyl rings they are bonded to, with torsion angles of 59.26 (8), 17.53 (11), 16.52 (12) and 52.86 (7)°. The dihedral angle between the di-hydro-isoxazole ring and the directly attached phenyl group is 86.86 (8)°. There are two nonclassical inter-molecular C-H⋯O hydrogen-bonding inter-actions that operate together with an inter-molecular C-H⋯π inter-action to form a supramolecular architecture in the crystal system.Entities:
Year: 2013 PMID: 24109366 PMCID: PMC3793779 DOI: 10.1107/S1600536813019508
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C27H25NO3 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 8059 reflections |
| θ = 2.3–25.1° | |
| µ = 0.08 mm−1 | |
| Block, yellow | |
| 0.40 × 0.20 × 0.20 mm |
| Bruker Kappa APEXII CCD diffractometer | 2967 independent reflections |
| Radiation source: fine-focus sealed tube | 2422 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.33 pixels mm-1 | θmax = 28.3°, θmin = 3.1° |
| ω and φ scan | |
| Absorption correction: multi-scan ( | |
| 20181 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2967 reflections | (Δ/σ)max < 0.001 |
| 283 parameters | Δρmax = 0.11 e Å−3 |
| 1 restraint | Δρmin = −0.16 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.14603 (9) | 0.40278 (10) | 0.0012 (3) | 0.0661 (5) | |
| O2 | 0.05003 (7) | 0.36111 (8) | 0.3046 (3) | 0.0517 (4) | |
| O3 | 0.20313 (8) | 0.27030 (9) | 0.7795 (3) | 0.0616 (4) | |
| N1 | 0.01783 (8) | 0.30875 (9) | 0.4612 (3) | 0.0458 (4) | |
| C3 | 0.25597 (12) | 0.60359 (13) | 0.4233 (5) | 0.0625 (7) | |
| H3 | 0.2772 | 0.6473 | 0.4690 | 0.075* | |
| C2 | 0.26649 (13) | 0.57720 (14) | 0.2177 (5) | 0.0637 (7) | |
| H2 | 0.2956 | 0.6023 | 0.1250 | 0.076* | |
| C1 | 0.23438 (11) | 0.51380 (13) | 0.1469 (4) | 0.0545 (5) | |
| H1 | 0.2416 | 0.4962 | 0.0062 | 0.065* | |
| C6 | 0.19103 (9) | 0.47575 (10) | 0.2851 (3) | 0.0402 (4) | |
| C7 | 0.15240 (10) | 0.41275 (12) | 0.1949 (4) | 0.0446 (5) | |
| C8 | 0.11570 (9) | 0.36106 (10) | 0.3468 (3) | 0.0407 (4) | |
| C9 | 0.13418 (9) | 0.31458 (10) | 0.5061 (3) | 0.0398 (4) | |
| C17 | 0.07315 (9) | 0.27504 (10) | 0.5896 (4) | 0.0432 (4) | |
| H17 | 0.0670 | 0.2856 | 0.7451 | 0.052* | |
| C18 | 0.07424 (9) | 0.19093 (11) | 0.5505 (4) | 0.0456 (5) | |
| C23 | 0.09136 (13) | 0.16269 (13) | 0.3489 (4) | 0.0619 (6) | |
| H23 | 0.1022 | 0.1956 | 0.2367 | 0.074* | |
| C22 | 0.09257 (16) | 0.08604 (14) | 0.3114 (5) | 0.0763 (8) | |
| H22 | 0.1048 | 0.0677 | 0.1752 | 0.092* | |
| C21 | 0.07586 (14) | 0.03747 (13) | 0.4739 (6) | 0.0761 (8) | |
| H21 | 0.0765 | −0.0140 | 0.4486 | 0.091* | |
| C24 | −0.03126 (10) | 0.35530 (11) | 0.5852 (4) | 0.0510 (5) | |
| C26 | −0.06460 (13) | 0.30225 (15) | 0.7463 (5) | 0.0782 (9) | |
| H26A | −0.0784 | 0.2575 | 0.6717 | 0.117* | |
| H26B | −0.1027 | 0.3265 | 0.8091 | 0.117* | |
| H26C | −0.0337 | 0.2893 | 0.8595 | 0.117* | |
| C27 | −0.08187 (12) | 0.38226 (15) | 0.4187 (5) | 0.0708 (7) | |
| H27A | −0.0603 | 0.4140 | 0.3139 | 0.106* | |
| H27B | −0.1163 | 0.4100 | 0.4912 | 0.106* | |
| H27C | −0.1010 | 0.3397 | 0.3457 | 0.106* | |
| C25 | −0.00051 (13) | 0.42144 (13) | 0.7032 (5) | 0.0639 (6) | |
| H25A | 0.0318 | 0.4036 | 0.8061 | 0.096* | |
| H25B | −0.0346 | 0.4488 | 0.7788 | 0.096* | |
| H25C | 0.0208 | 0.4539 | 0.5996 | 0.096* | |
| C20 | 0.05818 (14) | 0.06446 (14) | 0.6739 (6) | 0.0737 (8) | |
| H20 | 0.0466 | 0.0312 | 0.7845 | 0.088* | |
| C19 | 0.05747 (11) | 0.14130 (13) | 0.7128 (5) | 0.0595 (6) | |
| H19 | 0.0456 | 0.1593 | 0.8497 | 0.071* | |
| C10 | 0.19933 (10) | 0.30137 (10) | 0.6033 (4) | 0.0438 (4) | |
| C11 | 0.26076 (9) | 0.32369 (10) | 0.4850 (4) | 0.0451 (5) | |
| C16 | 0.30928 (11) | 0.36438 (13) | 0.5935 (5) | 0.0619 (6) | |
| H16 | 0.3019 | 0.3810 | 0.7351 | 0.074* | |
| C15 | 0.36829 (14) | 0.37991 (17) | 0.4906 (7) | 0.0864 (10) | |
| H15 | 0.4003 | 0.4087 | 0.5612 | 0.104* | |
| C14 | 0.38057 (15) | 0.35349 (19) | 0.2856 (8) | 0.0933 (11) | |
| H14 | 0.4213 | 0.3629 | 0.2193 | 0.112* | |
| C13 | 0.33269 (16) | 0.31311 (17) | 0.1776 (5) | 0.0814 (9) | |
| H13 | 0.3410 | 0.2951 | 0.0380 | 0.098* | |
| C12 | 0.27250 (12) | 0.29918 (13) | 0.2752 (4) | 0.0576 (6) | |
| H12 | 0.2396 | 0.2732 | 0.1998 | 0.069* | |
| C5 | 0.18161 (10) | 0.50193 (11) | 0.4950 (4) | 0.0462 (4) | |
| H5 | 0.1534 | 0.4764 | 0.5897 | 0.055* | |
| C4 | 0.21427 (12) | 0.56621 (12) | 0.5637 (4) | 0.0560 (5) | |
| H4 | 0.2080 | 0.5840 | 0.7047 | 0.067* |
| O1 | 0.0854 (12) | 0.0756 (10) | 0.0372 (8) | −0.0054 (9) | −0.0025 (8) | −0.0026 (8) |
| O2 | 0.0428 (7) | 0.0611 (8) | 0.0511 (8) | 0.0062 (6) | −0.0059 (7) | 0.0124 (7) |
| O3 | 0.0648 (9) | 0.0699 (10) | 0.0502 (9) | 0.0031 (7) | −0.0153 (8) | 0.0129 (8) |
| N1 | 0.0422 (8) | 0.0427 (8) | 0.0526 (10) | 0.0021 (7) | −0.0033 (8) | 0.0006 (8) |
| C3 | 0.0596 (14) | 0.0528 (12) | 0.0750 (18) | −0.0103 (10) | 0.0015 (13) | 0.0032 (13) |
| C2 | 0.0545 (13) | 0.0655 (14) | 0.0711 (17) | −0.0108 (11) | 0.0147 (12) | 0.0140 (13) |
| C1 | 0.0516 (12) | 0.0644 (13) | 0.0475 (12) | 0.0049 (10) | 0.0121 (10) | 0.0053 (10) |
| C6 | 0.0397 (9) | 0.0416 (9) | 0.0393 (10) | 0.0089 (7) | 0.0017 (9) | 0.0072 (8) |
| C7 | 0.0485 (11) | 0.0460 (10) | 0.0394 (11) | 0.0100 (8) | −0.0002 (9) | 0.0031 (9) |
| C8 | 0.0419 (10) | 0.0406 (10) | 0.0398 (11) | 0.0025 (8) | −0.0046 (8) | −0.0043 (8) |
| C9 | 0.0437 (9) | 0.0364 (8) | 0.0393 (10) | −0.0005 (7) | −0.0060 (9) | −0.0032 (8) |
| C17 | 0.0467 (10) | 0.0427 (10) | 0.0402 (10) | 0.0024 (8) | −0.0020 (9) | 0.0009 (9) |
| C18 | 0.0425 (10) | 0.0397 (9) | 0.0544 (13) | −0.0026 (8) | −0.0094 (9) | 0.0057 (9) |
| C23 | 0.0876 (17) | 0.0436 (11) | 0.0546 (15) | −0.0034 (11) | −0.0131 (13) | 0.0018 (11) |
| C22 | 0.109 (2) | 0.0506 (13) | 0.0698 (17) | −0.0003 (14) | −0.0221 (17) | −0.0089 (13) |
| C21 | 0.0867 (18) | 0.0427 (12) | 0.099 (2) | −0.0096 (12) | −0.0261 (18) | 0.0003 (15) |
| C24 | 0.0430 (10) | 0.0489 (11) | 0.0611 (13) | 0.0021 (9) | 0.0018 (10) | −0.0082 (11) |
| C26 | 0.0658 (15) | 0.0703 (15) | 0.098 (2) | −0.0048 (12) | 0.0304 (16) | −0.0025 (16) |
| C27 | 0.0476 (12) | 0.0747 (15) | 0.090 (2) | 0.0146 (11) | −0.0092 (13) | −0.0145 (16) |
| C25 | 0.0631 (14) | 0.0559 (13) | 0.0727 (17) | 0.0017 (11) | −0.0043 (13) | −0.0172 (13) |
| C20 | 0.0683 (15) | 0.0519 (14) | 0.101 (2) | −0.0095 (12) | −0.0033 (16) | 0.0288 (15) |
| C19 | 0.0527 (12) | 0.0575 (13) | 0.0684 (16) | −0.0018 (10) | 0.0030 (11) | 0.0151 (12) |
| C10 | 0.0524 (11) | 0.0374 (9) | 0.0415 (10) | 0.0045 (8) | −0.0131 (9) | −0.0050 (9) |
| C11 | 0.0434 (10) | 0.0399 (10) | 0.0520 (12) | 0.0079 (8) | −0.0102 (10) | 0.0036 (9) |
| C16 | 0.0570 (13) | 0.0583 (13) | 0.0704 (16) | −0.0015 (10) | −0.0167 (13) | 0.0024 (13) |
| C15 | 0.0545 (15) | 0.0826 (19) | 0.122 (3) | −0.0141 (13) | −0.0181 (19) | 0.025 (2) |
| C14 | 0.0583 (16) | 0.098 (2) | 0.123 (3) | 0.0151 (16) | 0.018 (2) | 0.045 (2) |
| C13 | 0.0803 (19) | 0.0897 (19) | 0.0742 (19) | 0.0328 (16) | 0.0175 (16) | 0.0174 (16) |
| C12 | 0.0582 (13) | 0.0591 (13) | 0.0556 (14) | 0.0142 (10) | −0.0043 (11) | −0.0019 (11) |
| C5 | 0.0490 (11) | 0.0467 (10) | 0.0428 (10) | −0.0020 (8) | 0.0056 (10) | 0.0041 (10) |
| C4 | 0.0655 (13) | 0.0510 (11) | 0.0513 (13) | −0.0036 (10) | 0.0040 (11) | −0.0052 (10) |
| O1—C7 | 1.209 (3) | C24—C27 | 1.520 (4) |
| O2—C8 | 1.345 (2) | C24—C26 | 1.522 (3) |
| O2—N1 | 1.487 (2) | C26—H26A | 0.9600 |
| O3—C10 | 1.217 (3) | C26—H26B | 0.9600 |
| N1—C17 | 1.489 (2) | C26—H26C | 0.9600 |
| N1—C24 | 1.496 (3) | C27—H27A | 0.9600 |
| C3—C2 | 1.363 (4) | C27—H27B | 0.9600 |
| C3—C4 | 1.374 (3) | C27—H27C | 0.9600 |
| C3—H3 | 0.9300 | C25—H25A | 0.9600 |
| C2—C1 | 1.371 (3) | C25—H25B | 0.9600 |
| C2—H2 | 0.9300 | C25—H25C | 0.9600 |
| C1—C6 | 1.392 (3) | C20—C19 | 1.388 (4) |
| C1—H1 | 0.9300 | C20—H20 | 0.9300 |
| C6—C5 | 1.383 (3) | C19—H19 | 0.9300 |
| C6—C7 | 1.472 (3) | C10—C11 | 1.486 (3) |
| C7—C8 | 1.503 (3) | C11—C12 | 1.380 (3) |
| C8—C9 | 1.333 (3) | C11—C16 | 1.386 (3) |
| C9—C10 | 1.458 (3) | C16—C15 | 1.372 (4) |
| C9—C17 | 1.505 (3) | C16—H16 | 0.9300 |
| C17—C18 | 1.516 (3) | C15—C14 | 1.365 (5) |
| C17—H17 | 0.9800 | C15—H15 | 0.9300 |
| C18—C19 | 1.374 (3) | C14—C13 | 1.372 (5) |
| C18—C23 | 1.379 (3) | C14—H14 | 0.9300 |
| C23—C22 | 1.384 (3) | C13—C12 | 1.372 (4) |
| C23—H23 | 0.9300 | C13—H13 | 0.9300 |
| C22—C21 | 1.362 (4) | C12—H12 | 0.9300 |
| C22—H22 | 0.9300 | C5—C4 | 1.385 (3) |
| C21—C20 | 1.365 (5) | C5—H5 | 0.9300 |
| C21—H21 | 0.9300 | C4—H4 | 0.9300 |
| C24—C25 | 1.514 (3) | ||
| C8—O2—N1 | 107.60 (14) | C24—C26—H26B | 109.5 |
| O2—N1—C17 | 105.62 (13) | H26A—C26—H26B | 109.5 |
| O2—N1—C24 | 105.59 (14) | C24—C26—H26C | 109.5 |
| C17—N1—C24 | 116.51 (17) | H26A—C26—H26C | 109.5 |
| C2—C3—C4 | 120.6 (2) | H26B—C26—H26C | 109.5 |
| C2—C3—H3 | 119.7 | C24—C27—H27A | 109.5 |
| C4—C3—H3 | 119.7 | C24—C27—H27B | 109.5 |
| C3—C2—C1 | 120.3 (2) | H27A—C27—H27B | 109.5 |
| C3—C2—H2 | 119.9 | C24—C27—H27C | 109.5 |
| C1—C2—H2 | 119.9 | H27A—C27—H27C | 109.5 |
| C2—C1—C6 | 120.1 (2) | H27B—C27—H27C | 109.5 |
| C2—C1—H1 | 119.9 | C24—C25—H25A | 109.5 |
| C6—C1—H1 | 119.9 | C24—C25—H25B | 109.5 |
| C5—C6—C1 | 119.32 (19) | H25A—C25—H25B | 109.5 |
| C5—C6—C7 | 122.32 (18) | C24—C25—H25C | 109.5 |
| C1—C6—C7 | 118.14 (19) | H25A—C25—H25C | 109.5 |
| O1—C7—C6 | 122.5 (2) | H25B—C25—H25C | 109.5 |
| O1—C7—C8 | 117.9 (2) | C21—C20—C19 | 120.3 (3) |
| C6—C7—C8 | 119.47 (18) | C21—C20—H20 | 119.9 |
| C9—C8—O2 | 114.52 (17) | C19—C20—H20 | 119.9 |
| C9—C8—C7 | 134.23 (18) | C18—C19—C20 | 120.4 (3) |
| O2—C8—C7 | 111.20 (16) | C18—C19—H19 | 119.8 |
| C8—C9—C10 | 130.56 (18) | C20—C19—H19 | 119.8 |
| C8—C9—C17 | 108.23 (16) | O3—C10—C9 | 119.5 (2) |
| C10—C9—C17 | 121.17 (17) | O3—C10—C11 | 120.21 (18) |
| N1—C17—C9 | 103.90 (15) | C9—C10—C11 | 120.22 (18) |
| N1—C17—C18 | 108.96 (15) | C12—C11—C16 | 119.6 (2) |
| C9—C17—C18 | 113.33 (16) | C12—C11—C10 | 120.88 (19) |
| N1—C17—H17 | 110.2 | C16—C11—C10 | 119.3 (2) |
| C9—C17—H17 | 110.2 | C15—C16—C11 | 119.5 (3) |
| C18—C17—H17 | 110.2 | C15—C16—H16 | 120.2 |
| C19—C18—C23 | 118.5 (2) | C11—C16—H16 | 120.2 |
| C19—C18—C17 | 121.1 (2) | C14—C15—C16 | 120.7 (3) |
| C23—C18—C17 | 120.37 (19) | C14—C15—H15 | 119.6 |
| C18—C23—C22 | 120.9 (2) | C16—C15—H15 | 119.6 |
| C18—C23—H23 | 119.6 | C15—C14—C13 | 119.9 (3) |
| C22—C23—H23 | 119.6 | C15—C14—H14 | 120.1 |
| C21—C22—C23 | 120.0 (3) | C13—C14—H14 | 120.1 |
| C21—C22—H22 | 120.0 | C14—C13—C12 | 120.2 (3) |
| C23—C22—H22 | 120.0 | C14—C13—H13 | 119.9 |
| C22—C21—C20 | 119.9 (2) | C12—C13—H13 | 119.9 |
| C22—C21—H21 | 120.0 | C13—C12—C11 | 120.0 (3) |
| C20—C21—H21 | 120.0 | C13—C12—H12 | 120.0 |
| N1—C24—C25 | 113.87 (17) | C11—C12—H12 | 120.0 |
| N1—C24—C27 | 105.9 (2) | C6—C5—C4 | 119.8 (2) |
| C25—C24—C27 | 110.46 (19) | C6—C5—H5 | 120.1 |
| N1—C24—C26 | 106.08 (17) | C4—C5—H5 | 120.1 |
| C25—C24—C26 | 110.6 (2) | C3—C4—C5 | 119.9 (2) |
| C27—C24—C26 | 109.7 (2) | C3—C4—H4 | 120.1 |
| C24—C26—H26A | 109.5 | C5—C4—H4 | 120.1 |
| C8—O2—N1—C17 | −3.35 (19) | C17—C18—C23—C22 | 180.0 (2) |
| C8—O2—N1—C24 | 120.65 (17) | C18—C23—C22—C21 | 0.9 (4) |
| C4—C3—C2—C1 | 1.4 (4) | C23—C22—C21—C20 | −0.2 (5) |
| C3—C2—C1—C6 | −0.3 (4) | O2—N1—C24—C25 | −58.2 (2) |
| C2—C1—C6—C5 | −1.0 (3) | C17—N1—C24—C25 | 58.7 (2) |
| C2—C1—C6—C7 | 173.7 (2) | O2—N1—C24—C27 | 63.41 (19) |
| C5—C6—C7—O1 | 158.6 (2) | C17—N1—C24—C27 | −179.74 (18) |
| C1—C6—C7—O1 | −15.9 (3) | O2—N1—C24—C26 | 179.99 (18) |
| C5—C6—C7—C8 | −17.5 (3) | C17—N1—C24—C26 | −63.2 (2) |
| C1—C6—C7—C8 | 167.99 (18) | C22—C21—C20—C19 | −0.3 (4) |
| N1—O2—C8—C9 | 1.9 (2) | C23—C18—C19—C20 | 0.3 (3) |
| N1—O2—C8—C7 | 179.93 (15) | C17—C18—C19—C20 | 179.5 (2) |
| O1—C7—C8—C9 | 121.7 (3) | C21—C20—C19—C18 | 0.3 (4) |
| C6—C7—C8—C9 | −62.0 (3) | C8—C9—C10—O3 | 162.4 (2) |
| O1—C7—C8—O2 | −55.8 (3) | C17—C9—C10—O3 | −14.9 (3) |
| C6—C7—C8—O2 | 120.48 (19) | C8—C9—C10—C11 | −19.3 (3) |
| O2—C8—C9—C10 | −177.13 (19) | C17—C9—C10—C11 | 163.36 (17) |
| C7—C8—C9—C10 | 5.4 (4) | O3—C10—C11—C12 | 124.2 (2) |
| O2—C8—C9—C17 | 0.4 (2) | C9—C10—C11—C12 | −54.0 (2) |
| C7—C8—C9—C17 | −177.0 (2) | O3—C10—C11—C16 | −50.4 (3) |
| O2—N1—C17—C9 | 3.45 (18) | C9—C10—C11—C16 | 131.4 (2) |
| C24—N1—C17—C9 | −113.39 (17) | C12—C11—C16—C15 | 0.2 (3) |
| O2—N1—C17—C18 | −117.64 (17) | C10—C11—C16—C15 | 174.8 (2) |
| C24—N1—C17—C18 | 125.52 (18) | C11—C16—C15—C14 | −2.3 (4) |
| C8—C9—C17—N1 | −2.5 (2) | C16—C15—C14—C13 | 2.2 (5) |
| C10—C9—C17—N1 | 175.33 (17) | C15—C14—C13—C12 | 0.0 (4) |
| C8—C9—C17—C18 | 115.60 (19) | C14—C13—C12—C11 | −2.1 (4) |
| C10—C9—C17—C18 | −66.6 (2) | C16—C11—C12—C13 | 2.0 (3) |
| N1—C17—C18—C19 | −111.1 (2) | C10—C11—C12—C13 | −172.5 (2) |
| C9—C17—C18—C19 | 133.7 (2) | C1—C6—C5—C4 | 1.2 (3) |
| N1—C17—C18—C23 | 68.0 (2) | C7—C6—C5—C4 | −173.24 (19) |
| C9—C17—C18—C23 | −47.1 (3) | C2—C3—C4—C5 | −1.2 (4) |
| C19—C18—C23—C22 | −0.9 (4) | C6—C5—C4—C3 | −0.1 (3) |
| H··· | ||||
| C3—H3···O3i | 0.93 | 2.51 | 3.203 (3) | 131 |
| C25—H25 | 0.96 | 2.59 | 3.483 (3) | 155 |
| C2—H2··· | 0.93 | 2.70 | 3.490 (3) | 143 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C18–C23 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C3—H3⋯O3i | 0.93 | 2.51 | 3.203 (3) | 131 |
| C25—H25 | 0.96 | 2.59 | 3.483 (3) | 155 |
| C2—H2⋯ | 0.93 | 2.70 | 3.490 (3) | 143 |
Symmetry codes: (i) ; (ii) .