Literature DB >> 24109366

(2-tert-Butyl-3-phenyl-2,3-di-hydro-isoxazole-4,5-di-yl)bis-(phenyl-methanone).

R Sandhya1, M Sithambaresan, S Prathapan, M R Prathapachandra Kurup.   

Abstract

The phenyl and tert-butyl groups of the title compound, C27H25NO3, exhibit a trans configuration in agreement with the stereochemistry of the Z phenyl-N-tert-butyl-nitrone starting material. The attached carbonyl groups are not coplanar with the neighboring di-hydro-isoxazole ring and the phenyl rings they are bonded to, with torsion angles of 59.26 (8), 17.53 (11), 16.52 (12) and 52.86 (7)°. The dihedral angle between the di-hydro-isoxazole ring and the directly attached phenyl group is 86.86 (8)°. There are two nonclassical inter-molecular C-H⋯O hydrogen-bonding inter-actions that operate together with an inter-molecular C-H⋯π inter-action to form a supramolecular architecture in the crystal system.

Entities:  

Year:  2013        PMID: 24109366      PMCID: PMC3793779          DOI: 10.1107/S1600536813019508

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to isoxazoline derivatives and their applications, see: Kiss et al. (2009 ▶); Velikorodov & Sukhenko (2003 ▶); Shi et al. (2012 ▶); Khan & Lee (2006 ▶). For the mechanism of the 1,3-dipolar cyclo­addition of nitro­nes with alkynes, see: Eberson et al. (1998 ▶). For the synthesis of related compounds, see: Chakraborty et al. (2012 ▶).

Experimental

Crystal data

C27H25NO3 M = 411.48 Orthorhombic, a = 20.1034 (12) Å b = 17.799 (1) Å c = 6.1366 (3) Å V = 2195.8 (2) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.40 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.968, T max = 0.984 20181 measured reflections 2967 independent reflections 2422 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.094 S = 1.05 2967 reflections 283 parameters 1 restraint H-atom parameters constrained Δρmax = 0.11 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813019508/zl2560sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019508/zl2560Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813019508/zl2560Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H25NO3F(000) = 872
Mr = 411.48Dx = 1.245 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 8059 reflections
a = 20.1034 (12) Åθ = 2.3–25.1°
b = 17.799 (1) ŵ = 0.08 mm1
c = 6.1366 (3) ÅT = 296 K
V = 2195.8 (2) Å3Block, yellow
Z = 40.40 × 0.20 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer2967 independent reflections
Radiation source: fine-focus sealed tube2422 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
Detector resolution: 8.33 pixels mm-1θmax = 28.3°, θmin = 3.1°
ω and φ scanh = −26→24
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −23→20
Tmin = 0.968, Tmax = 0.984l = −8→8
20181 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0417P)2 + 0.2966P] where P = (Fo2 + 2Fc2)/3
2967 reflections(Δ/σ)max < 0.001
283 parametersΔρmax = 0.11 e Å3
1 restraintΔρmin = −0.16 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.14603 (9)0.40278 (10)0.0012 (3)0.0661 (5)
O20.05003 (7)0.36111 (8)0.3046 (3)0.0517 (4)
O30.20313 (8)0.27030 (9)0.7795 (3)0.0616 (4)
N10.01783 (8)0.30875 (9)0.4612 (3)0.0458 (4)
C30.25597 (12)0.60359 (13)0.4233 (5)0.0625 (7)
H30.27720.64730.46900.075*
C20.26649 (13)0.57720 (14)0.2177 (5)0.0637 (7)
H20.29560.60230.12500.076*
C10.23438 (11)0.51380 (13)0.1469 (4)0.0545 (5)
H10.24160.49620.00620.065*
C60.19103 (9)0.47575 (10)0.2851 (3)0.0402 (4)
C70.15240 (10)0.41275 (12)0.1949 (4)0.0446 (5)
C80.11570 (9)0.36106 (10)0.3468 (3)0.0407 (4)
C90.13418 (9)0.31458 (10)0.5061 (3)0.0398 (4)
C170.07315 (9)0.27504 (10)0.5896 (4)0.0432 (4)
H170.06700.28560.74510.052*
C180.07424 (9)0.19093 (11)0.5505 (4)0.0456 (5)
C230.09136 (13)0.16269 (13)0.3489 (4)0.0619 (6)
H230.10220.19560.23670.074*
C220.09257 (16)0.08604 (14)0.3114 (5)0.0763 (8)
H220.10480.06770.17520.092*
C210.07586 (14)0.03747 (13)0.4739 (6)0.0761 (8)
H210.0765−0.01400.44860.091*
C24−0.03126 (10)0.35530 (11)0.5852 (4)0.0510 (5)
C26−0.06460 (13)0.30225 (15)0.7463 (5)0.0782 (9)
H26A−0.07840.25750.67170.117*
H26B−0.10270.32650.80910.117*
H26C−0.03370.28930.85950.117*
C27−0.08187 (12)0.38226 (15)0.4187 (5)0.0708 (7)
H27A−0.06030.41400.31390.106*
H27B−0.11630.41000.49120.106*
H27C−0.10100.33970.34570.106*
C25−0.00051 (13)0.42144 (13)0.7032 (5)0.0639 (6)
H25A0.03180.40360.80610.096*
H25B−0.03460.44880.77880.096*
H25C0.02080.45390.59960.096*
C200.05818 (14)0.06446 (14)0.6739 (6)0.0737 (8)
H200.04660.03120.78450.088*
C190.05747 (11)0.14130 (13)0.7128 (5)0.0595 (6)
H190.04560.15930.84970.071*
C100.19933 (10)0.30137 (10)0.6033 (4)0.0438 (4)
C110.26076 (9)0.32369 (10)0.4850 (4)0.0451 (5)
C160.30928 (11)0.36438 (13)0.5935 (5)0.0619 (6)
H160.30190.38100.73510.074*
C150.36829 (14)0.37991 (17)0.4906 (7)0.0864 (10)
H150.40030.40870.56120.104*
C140.38057 (15)0.35349 (19)0.2856 (8)0.0933 (11)
H140.42130.36290.21930.112*
C130.33269 (16)0.31311 (17)0.1776 (5)0.0814 (9)
H130.34100.29510.03800.098*
C120.27250 (12)0.29918 (13)0.2752 (4)0.0576 (6)
H120.23960.27320.19980.069*
C50.18161 (10)0.50193 (11)0.4950 (4)0.0462 (4)
H50.15340.47640.58970.055*
C40.21427 (12)0.56621 (12)0.5637 (4)0.0560 (5)
H40.20800.58400.70470.067*
U11U22U33U12U13U23
O10.0854 (12)0.0756 (10)0.0372 (8)−0.0054 (9)−0.0025 (8)−0.0026 (8)
O20.0428 (7)0.0611 (8)0.0511 (8)0.0062 (6)−0.0059 (7)0.0124 (7)
O30.0648 (9)0.0699 (10)0.0502 (9)0.0031 (7)−0.0153 (8)0.0129 (8)
N10.0422 (8)0.0427 (8)0.0526 (10)0.0021 (7)−0.0033 (8)0.0006 (8)
C30.0596 (14)0.0528 (12)0.0750 (18)−0.0103 (10)0.0015 (13)0.0032 (13)
C20.0545 (13)0.0655 (14)0.0711 (17)−0.0108 (11)0.0147 (12)0.0140 (13)
C10.0516 (12)0.0644 (13)0.0475 (12)0.0049 (10)0.0121 (10)0.0053 (10)
C60.0397 (9)0.0416 (9)0.0393 (10)0.0089 (7)0.0017 (9)0.0072 (8)
C70.0485 (11)0.0460 (10)0.0394 (11)0.0100 (8)−0.0002 (9)0.0031 (9)
C80.0419 (10)0.0406 (10)0.0398 (11)0.0025 (8)−0.0046 (8)−0.0043 (8)
C90.0437 (9)0.0364 (8)0.0393 (10)−0.0005 (7)−0.0060 (9)−0.0032 (8)
C170.0467 (10)0.0427 (10)0.0402 (10)0.0024 (8)−0.0020 (9)0.0009 (9)
C180.0425 (10)0.0397 (9)0.0544 (13)−0.0026 (8)−0.0094 (9)0.0057 (9)
C230.0876 (17)0.0436 (11)0.0546 (15)−0.0034 (11)−0.0131 (13)0.0018 (11)
C220.109 (2)0.0506 (13)0.0698 (17)−0.0003 (14)−0.0221 (17)−0.0089 (13)
C210.0867 (18)0.0427 (12)0.099 (2)−0.0096 (12)−0.0261 (18)0.0003 (15)
C240.0430 (10)0.0489 (11)0.0611 (13)0.0021 (9)0.0018 (10)−0.0082 (11)
C260.0658 (15)0.0703 (15)0.098 (2)−0.0048 (12)0.0304 (16)−0.0025 (16)
C270.0476 (12)0.0747 (15)0.090 (2)0.0146 (11)−0.0092 (13)−0.0145 (16)
C250.0631 (14)0.0559 (13)0.0727 (17)0.0017 (11)−0.0043 (13)−0.0172 (13)
C200.0683 (15)0.0519 (14)0.101 (2)−0.0095 (12)−0.0033 (16)0.0288 (15)
C190.0527 (12)0.0575 (13)0.0684 (16)−0.0018 (10)0.0030 (11)0.0151 (12)
C100.0524 (11)0.0374 (9)0.0415 (10)0.0045 (8)−0.0131 (9)−0.0050 (9)
C110.0434 (10)0.0399 (10)0.0520 (12)0.0079 (8)−0.0102 (10)0.0036 (9)
C160.0570 (13)0.0583 (13)0.0704 (16)−0.0015 (10)−0.0167 (13)0.0024 (13)
C150.0545 (15)0.0826 (19)0.122 (3)−0.0141 (13)−0.0181 (19)0.025 (2)
C140.0583 (16)0.098 (2)0.123 (3)0.0151 (16)0.018 (2)0.045 (2)
C130.0803 (19)0.0897 (19)0.0742 (19)0.0328 (16)0.0175 (16)0.0174 (16)
C120.0582 (13)0.0591 (13)0.0556 (14)0.0142 (10)−0.0043 (11)−0.0019 (11)
C50.0490 (11)0.0467 (10)0.0428 (10)−0.0020 (8)0.0056 (10)0.0041 (10)
C40.0655 (13)0.0510 (11)0.0513 (13)−0.0036 (10)0.0040 (11)−0.0052 (10)
O1—C71.209 (3)C24—C271.520 (4)
O2—C81.345 (2)C24—C261.522 (3)
O2—N11.487 (2)C26—H26A0.9600
O3—C101.217 (3)C26—H26B0.9600
N1—C171.489 (2)C26—H26C0.9600
N1—C241.496 (3)C27—H27A0.9600
C3—C21.363 (4)C27—H27B0.9600
C3—C41.374 (3)C27—H27C0.9600
C3—H30.9300C25—H25A0.9600
C2—C11.371 (3)C25—H25B0.9600
C2—H20.9300C25—H25C0.9600
C1—C61.392 (3)C20—C191.388 (4)
C1—H10.9300C20—H200.9300
C6—C51.383 (3)C19—H190.9300
C6—C71.472 (3)C10—C111.486 (3)
C7—C81.503 (3)C11—C121.380 (3)
C8—C91.333 (3)C11—C161.386 (3)
C9—C101.458 (3)C16—C151.372 (4)
C9—C171.505 (3)C16—H160.9300
C17—C181.516 (3)C15—C141.365 (5)
C17—H170.9800C15—H150.9300
C18—C191.374 (3)C14—C131.372 (5)
C18—C231.379 (3)C14—H140.9300
C23—C221.384 (3)C13—C121.372 (4)
C23—H230.9300C13—H130.9300
C22—C211.362 (4)C12—H120.9300
C22—H220.9300C5—C41.385 (3)
C21—C201.365 (5)C5—H50.9300
C21—H210.9300C4—H40.9300
C24—C251.514 (3)
C8—O2—N1107.60 (14)C24—C26—H26B109.5
O2—N1—C17105.62 (13)H26A—C26—H26B109.5
O2—N1—C24105.59 (14)C24—C26—H26C109.5
C17—N1—C24116.51 (17)H26A—C26—H26C109.5
C2—C3—C4120.6 (2)H26B—C26—H26C109.5
C2—C3—H3119.7C24—C27—H27A109.5
C4—C3—H3119.7C24—C27—H27B109.5
C3—C2—C1120.3 (2)H27A—C27—H27B109.5
C3—C2—H2119.9C24—C27—H27C109.5
C1—C2—H2119.9H27A—C27—H27C109.5
C2—C1—C6120.1 (2)H27B—C27—H27C109.5
C2—C1—H1119.9C24—C25—H25A109.5
C6—C1—H1119.9C24—C25—H25B109.5
C5—C6—C1119.32 (19)H25A—C25—H25B109.5
C5—C6—C7122.32 (18)C24—C25—H25C109.5
C1—C6—C7118.14 (19)H25A—C25—H25C109.5
O1—C7—C6122.5 (2)H25B—C25—H25C109.5
O1—C7—C8117.9 (2)C21—C20—C19120.3 (3)
C6—C7—C8119.47 (18)C21—C20—H20119.9
C9—C8—O2114.52 (17)C19—C20—H20119.9
C9—C8—C7134.23 (18)C18—C19—C20120.4 (3)
O2—C8—C7111.20 (16)C18—C19—H19119.8
C8—C9—C10130.56 (18)C20—C19—H19119.8
C8—C9—C17108.23 (16)O3—C10—C9119.5 (2)
C10—C9—C17121.17 (17)O3—C10—C11120.21 (18)
N1—C17—C9103.90 (15)C9—C10—C11120.22 (18)
N1—C17—C18108.96 (15)C12—C11—C16119.6 (2)
C9—C17—C18113.33 (16)C12—C11—C10120.88 (19)
N1—C17—H17110.2C16—C11—C10119.3 (2)
C9—C17—H17110.2C15—C16—C11119.5 (3)
C18—C17—H17110.2C15—C16—H16120.2
C19—C18—C23118.5 (2)C11—C16—H16120.2
C19—C18—C17121.1 (2)C14—C15—C16120.7 (3)
C23—C18—C17120.37 (19)C14—C15—H15119.6
C18—C23—C22120.9 (2)C16—C15—H15119.6
C18—C23—H23119.6C15—C14—C13119.9 (3)
C22—C23—H23119.6C15—C14—H14120.1
C21—C22—C23120.0 (3)C13—C14—H14120.1
C21—C22—H22120.0C14—C13—C12120.2 (3)
C23—C22—H22120.0C14—C13—H13119.9
C22—C21—C20119.9 (2)C12—C13—H13119.9
C22—C21—H21120.0C13—C12—C11120.0 (3)
C20—C21—H21120.0C13—C12—H12120.0
N1—C24—C25113.87 (17)C11—C12—H12120.0
N1—C24—C27105.9 (2)C6—C5—C4119.8 (2)
C25—C24—C27110.46 (19)C6—C5—H5120.1
N1—C24—C26106.08 (17)C4—C5—H5120.1
C25—C24—C26110.6 (2)C3—C4—C5119.9 (2)
C27—C24—C26109.7 (2)C3—C4—H4120.1
C24—C26—H26A109.5C5—C4—H4120.1
C8—O2—N1—C17−3.35 (19)C17—C18—C23—C22180.0 (2)
C8—O2—N1—C24120.65 (17)C18—C23—C22—C210.9 (4)
C4—C3—C2—C11.4 (4)C23—C22—C21—C20−0.2 (5)
C3—C2—C1—C6−0.3 (4)O2—N1—C24—C25−58.2 (2)
C2—C1—C6—C5−1.0 (3)C17—N1—C24—C2558.7 (2)
C2—C1—C6—C7173.7 (2)O2—N1—C24—C2763.41 (19)
C5—C6—C7—O1158.6 (2)C17—N1—C24—C27−179.74 (18)
C1—C6—C7—O1−15.9 (3)O2—N1—C24—C26179.99 (18)
C5—C6—C7—C8−17.5 (3)C17—N1—C24—C26−63.2 (2)
C1—C6—C7—C8167.99 (18)C22—C21—C20—C19−0.3 (4)
N1—O2—C8—C91.9 (2)C23—C18—C19—C200.3 (3)
N1—O2—C8—C7179.93 (15)C17—C18—C19—C20179.5 (2)
O1—C7—C8—C9121.7 (3)C21—C20—C19—C180.3 (4)
C6—C7—C8—C9−62.0 (3)C8—C9—C10—O3162.4 (2)
O1—C7—C8—O2−55.8 (3)C17—C9—C10—O3−14.9 (3)
C6—C7—C8—O2120.48 (19)C8—C9—C10—C11−19.3 (3)
O2—C8—C9—C10−177.13 (19)C17—C9—C10—C11163.36 (17)
C7—C8—C9—C105.4 (4)O3—C10—C11—C12124.2 (2)
O2—C8—C9—C170.4 (2)C9—C10—C11—C12−54.0 (2)
C7—C8—C9—C17−177.0 (2)O3—C10—C11—C16−50.4 (3)
O2—N1—C17—C93.45 (18)C9—C10—C11—C16131.4 (2)
C24—N1—C17—C9−113.39 (17)C12—C11—C16—C150.2 (3)
O2—N1—C17—C18−117.64 (17)C10—C11—C16—C15174.8 (2)
C24—N1—C17—C18125.52 (18)C11—C16—C15—C14−2.3 (4)
C8—C9—C17—N1−2.5 (2)C16—C15—C14—C132.2 (5)
C10—C9—C17—N1175.33 (17)C15—C14—C13—C120.0 (4)
C8—C9—C17—C18115.60 (19)C14—C13—C12—C11−2.1 (4)
C10—C9—C17—C18−66.6 (2)C16—C11—C12—C132.0 (3)
N1—C17—C18—C19−111.1 (2)C10—C11—C12—C13−172.5 (2)
C9—C17—C18—C19133.7 (2)C1—C6—C5—C41.2 (3)
N1—C17—C18—C2368.0 (2)C7—C6—C5—C4−173.24 (19)
C9—C17—C18—C23−47.1 (3)C2—C3—C4—C5−1.2 (4)
C19—C18—C23—C22−0.9 (4)C6—C5—C4—C3−0.1 (3)
D—H···AD—HH···AD···AD—H···A
C3—H3···O3i0.932.513.203 (3)131
C25—H25A···O1ii0.962.593.483 (3)155
C2—H2···Cg1i0.932.703.490 (3)143
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C18–C23 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯O3i 0.932.513.203 (3)131
C25—H25A⋯O1ii 0.962.593.483 (3)155
C2—H2⋯Cg1i 0.932.703.490 (3)143

Symmetry codes: (i) ; (ii) .

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  3 in total
  1 in total

1.  [2-Benzyl-3-(naphthalen-1-yl)-2,3-di-hydro-1,2-oxazole-4,5-di-yl]bis-(phenyl-methanone).

Authors:  R Sandhya; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-26
  1 in total

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