Literature DB >> 24109355

2-[(1,3-Benzo-thia-zol-2-yl)imino-meth-yl]-6-meth-oxy-phenol: a new monoclinic polymorph.

Md Abu Affan1, Philip G Jessop, Md Abdus Salam, Siti Nadiah Binti Abdul Halim, Edward R T Tiekink.   

Abstract

The title compound, C15H12N2O2S, is a P21/c polymorph of a previously reported P21/n polymorph [Büyükgüngör et al. (2004 ▶). Acta Cryst. E60, o1414-o1416]. The dihedral angle between the benzo-thia-zole (r.m.s. deviation = 0.010 Å) and the benzene ring of 7.86 (6)° compares with 10.76 (10)° in the literature structure. The meth-oxy substituent is almost coplanar with the benzene ring to which it is attached [C-O-C-C torsion angle = 178.31 (14)°] and the conformation about the imine bond [1.287 (2) Å] is E. There is an intra-molecular O-H⋯N hydrogen bond and the hy-droxy O and thio-ether S atoms are syn. In the crystal, columns are formed along the b axis as centrosymmetric dimeric aggregates, mediated by C-H⋯O inter-actions and linked by π-π inter-actions between the thia-zole and benzene rings [centroid-to-centroid distance = 3.8256 (10) Å].

Entities:  

Year:  2013        PMID: 24109355      PMCID: PMC3793768          DOI: 10.1107/S1600536813019387

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of organotin compounds with N-, O- and S-atom donors, see: Affan et al. (2009 ▶). For the structure of the P21/n polymorph, see: Büyükgüngör et al. (2004 ▶).

Experimental

Crystal data

C15H12N2O2S M = 284.33 Monoclinic, a = 11.6697 (11) Å b = 6.0250 (6) Å c = 18.6441 (18) Å β = 94.346 (1)° V = 1307.1 (2) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 100 K 0.20 × 0.16 × 0.15 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.669, T max = 0.746 15750 measured reflections 2983 independent reflections 2404 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.095 S = 1.05 2983 reflections 183 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶), QMol (Gans & Shalloway, 2001 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813019387/su2623sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019387/su2623Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813019387/su2623Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12N2O2SF(000) = 592
Mr = 284.33Dx = 1.445 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2808 reflections
a = 11.6697 (11) Åθ = 2.7–26.6°
b = 6.0250 (6) ŵ = 0.25 mm1
c = 18.6441 (18) ÅT = 100 K
β = 94.346 (1)°Block, yellow
V = 1307.1 (2) Å30.20 × 0.16 × 0.15 mm
Z = 4
Bruker SMART APEX diffractometer2983 independent reflections
Radiation source: fine-focus sealed tube2404 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.046
φ and ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.669, Tmax = 0.746k = −7→7
15750 measured reflectionsl = −23→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0424P)2 + 0.3573P] where P = (Fo2 + 2Fc2)/3
2983 reflections(Δ/σ)max = 0.001
183 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.40036 (3)−0.28845 (7)0.51769 (2)0.02579 (13)
O10.38182 (9)0.30422 (19)0.37054 (6)0.0291 (3)
H1O0.37540.19180.39660.044*
O20.37477 (10)0.6591 (2)0.29096 (6)0.0319 (3)
N10.17783 (11)−0.3057 (2)0.49353 (7)0.0242 (3)
N20.27272 (11)−0.0044 (2)0.43688 (7)0.0233 (3)
C10.32893 (13)−0.5026 (3)0.55699 (8)0.0231 (3)
C20.21017 (13)−0.4851 (3)0.53783 (8)0.0232 (3)
C30.13496 (15)−0.6425 (3)0.56295 (9)0.0301 (4)
H30.0549−0.63550.54950.036*
C40.17954 (16)−0.8081 (3)0.60766 (10)0.0335 (4)
H40.1292−0.91500.62570.040*
C50.29730 (16)−0.8223 (3)0.62712 (9)0.0318 (4)
H50.3253−0.93830.65820.038*
C60.37344 (15)−0.6718 (3)0.60217 (9)0.0278 (4)
H60.4535−0.68260.61520.033*
C70.26852 (13)−0.1942 (3)0.47956 (8)0.0228 (3)
C80.17759 (14)0.0866 (3)0.41305 (8)0.0241 (3)
H80.10710.02330.42530.029*
C90.17491 (13)0.2822 (3)0.36818 (8)0.0225 (3)
C100.27665 (13)0.3830 (3)0.34943 (8)0.0221 (3)
C110.27064 (14)0.5760 (3)0.30645 (8)0.0235 (3)
C120.16509 (14)0.6647 (3)0.28398 (8)0.0265 (4)
H120.16120.79480.25510.032*
C130.06360 (15)0.5648 (3)0.30329 (9)0.0298 (4)
H13−0.00880.62720.28760.036*
C140.06870 (14)0.3774 (3)0.34480 (9)0.0274 (4)
H14−0.00040.31080.35800.033*
C150.37379 (17)0.8514 (3)0.24585 (10)0.0353 (4)
H15A0.33020.81930.20000.053*
H15B0.45290.89140.23690.053*
H15C0.33770.97510.26970.053*
U11U22U33U12U13U23
S10.0245 (2)0.0231 (2)0.0297 (2)0.00138 (16)0.00111 (16)0.00382 (17)
O10.0241 (6)0.0283 (7)0.0344 (7)0.0017 (5)−0.0005 (5)0.0084 (5)
O20.0308 (6)0.0303 (7)0.0348 (7)−0.0024 (5)0.0041 (5)0.0105 (5)
N10.0272 (7)0.0211 (7)0.0243 (7)0.0006 (5)0.0013 (5)0.0008 (5)
N20.0280 (7)0.0181 (7)0.0234 (7)0.0004 (5)0.0006 (5)0.0010 (5)
C10.0289 (8)0.0202 (8)0.0208 (7)0.0005 (6)0.0047 (6)−0.0015 (6)
C20.0293 (8)0.0198 (8)0.0206 (7)0.0020 (6)0.0036 (6)−0.0013 (6)
C30.0318 (9)0.0286 (9)0.0307 (9)−0.0012 (7)0.0065 (7)0.0018 (7)
C40.0412 (10)0.0267 (9)0.0342 (9)−0.0031 (8)0.0122 (8)0.0049 (7)
C50.0466 (11)0.0239 (9)0.0257 (9)0.0065 (8)0.0075 (8)0.0051 (7)
C60.0327 (9)0.0264 (9)0.0244 (8)0.0060 (7)0.0027 (7)0.0016 (7)
C70.0263 (8)0.0210 (8)0.0209 (8)0.0015 (6)0.0008 (6)−0.0021 (6)
C80.0259 (8)0.0223 (8)0.0242 (8)−0.0028 (6)0.0018 (6)−0.0014 (6)
C90.0272 (8)0.0201 (8)0.0199 (7)0.0001 (6)0.0000 (6)−0.0018 (6)
C100.0251 (8)0.0212 (8)0.0197 (7)0.0016 (6)−0.0006 (6)−0.0028 (6)
C110.0293 (8)0.0209 (8)0.0203 (7)−0.0023 (6)0.0019 (6)−0.0015 (6)
C120.0345 (9)0.0226 (8)0.0218 (8)0.0028 (7)−0.0014 (7)0.0024 (6)
C130.0288 (9)0.0290 (9)0.0310 (9)0.0046 (7)−0.0028 (7)0.0028 (7)
C140.0254 (8)0.0260 (9)0.0305 (9)−0.0013 (7)0.0003 (7)0.0009 (7)
C150.0453 (11)0.0259 (9)0.0356 (10)−0.0051 (8)0.0092 (8)0.0063 (8)
S1—C11.7289 (16)C5—C61.375 (2)
S1—C71.7404 (16)C5—H50.9500
O1—C101.3466 (18)C6—H60.9500
O1—H1O0.8400C8—C91.444 (2)
O2—C111.3653 (19)C8—H80.9500
O2—C151.431 (2)C9—C101.401 (2)
N1—C71.296 (2)C9—C141.405 (2)
N1—C21.395 (2)C10—C111.411 (2)
N2—C81.287 (2)C11—C121.378 (2)
N2—C71.396 (2)C12—C131.400 (2)
C1—C61.397 (2)C12—H120.9500
C1—C21.409 (2)C13—C141.368 (2)
C2—C31.397 (2)C13—H130.9500
C3—C41.377 (2)C14—H140.9500
C3—H30.9500C15—H15A0.9800
C4—C51.397 (3)C15—H15B0.9800
C4—H40.9500C15—H15C0.9800
C1—S1—C788.67 (8)N2—C8—H8119.1
C10—O1—H1O109.5C9—C8—H8119.1
C11—O2—C15116.98 (13)C10—C9—C14119.33 (14)
C7—N1—C2109.40 (13)C10—C9—C8121.11 (14)
C8—N2—C7118.64 (14)C14—C9—C8119.53 (15)
C6—C1—C2121.41 (15)O1—C10—C9123.02 (14)
C6—C1—S1129.12 (13)O1—C10—C11117.49 (14)
C2—C1—S1109.47 (12)C9—C10—C11119.50 (14)
C3—C2—N1125.17 (15)O2—C11—C12125.64 (15)
C3—C2—C1119.68 (15)O2—C11—C10114.56 (14)
N1—C2—C1115.15 (14)C12—C11—C10119.80 (15)
C4—C3—C2118.49 (16)C11—C12—C13120.61 (15)
C4—C3—H3120.8C11—C12—H12119.7
C2—C3—H3120.8C13—C12—H12119.7
C3—C4—C5121.37 (16)C14—C13—C12119.95 (15)
C3—C4—H4119.3C14—C13—H13120.0
C5—C4—H4119.3C12—C13—H13120.0
C6—C5—C4121.34 (16)C13—C14—C9120.81 (16)
C6—C5—H5119.3C13—C14—H14119.6
C4—C5—H5119.3C9—C14—H14119.6
C5—C6—C1117.70 (16)O2—C15—H15A109.5
C5—C6—H6121.1O2—C15—H15B109.5
C1—C6—H6121.1H15A—C15—H15B109.5
N1—C7—N2127.11 (14)O2—C15—H15C109.5
N1—C7—S1117.30 (12)H15A—C15—H15C109.5
N2—C7—S1115.58 (11)H15B—C15—H15C109.5
N2—C8—C9121.88 (15)
C7—S1—C1—C6−179.01 (16)C1—S1—C7—N2−179.79 (12)
C7—S1—C1—C20.03 (12)C7—N2—C8—C9−179.54 (13)
C7—N1—C2—C3−179.18 (15)N2—C8—C9—C10−0.8 (2)
C7—N1—C2—C10.46 (19)N2—C8—C9—C14−178.75 (15)
C6—C1—C2—C3−1.5 (2)C14—C9—C10—O1179.00 (14)
S1—C1—C2—C3179.37 (12)C8—C9—C10—O11.1 (2)
C6—C1—C2—N1178.85 (14)C14—C9—C10—C11−1.1 (2)
S1—C1—C2—N1−0.28 (17)C8—C9—C10—C11−178.97 (14)
N1—C2—C3—C4−178.67 (15)C15—O2—C11—C12−1.8 (2)
C1—C2—C3—C41.7 (2)C15—O2—C11—C10178.31 (14)
C2—C3—C4—C5−0.9 (3)O1—C10—C11—O20.5 (2)
C3—C4—C5—C6−0.2 (3)C9—C10—C11—O2−179.46 (13)
C4—C5—C6—C10.5 (2)O1—C10—C11—C12−179.39 (14)
C2—C1—C6—C50.4 (2)C9—C10—C11—C120.7 (2)
S1—C1—C6—C5179.32 (13)O2—C11—C12—C13−179.97 (15)
C2—N1—C7—N2179.60 (14)C10—C11—C12—C13−0.1 (2)
C2—N1—C7—S1−0.44 (17)C11—C12—C13—C140.0 (3)
C8—N2—C7—N16.8 (2)C12—C13—C14—C9−0.4 (3)
C8—N2—C7—S1−173.12 (12)C10—C9—C14—C130.9 (2)
C1—S1—C7—N10.25 (13)C8—C9—C14—C13178.87 (15)
D—H···AD—HH···AD···AD—H···A
O1—H1O···N20.841.882.6167 (17)146
C6—H6···O2i0.952.563.424 (2)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1O⋯N20.841.882.6167 (17)146
C6—H6⋯O2i 0.952.563.424 (2)151

Symmetry code: (i) .

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