Literature DB >> 24109354

3,4-Di-methyl-thieno[2,3-b]thio-phene-2,5-dicarbo-nitrile.

Yahia Nasser Mabkhot1, S S Al-Showiman, Assem Barakat, M Iqbal Choudhary, Sammer Yousuf.   

Abstract

The asymmetric unit of the title compound, C10H6N2S2, contains two crystallographically independent but conformationally similar mol-ecules. The fused thio-phene ring cores are almost planar [maximum deviation = 0.027 (3) Å] with the thio-phene rings forming dihedral angles of 0.5 (4)° in one mol-ecule and 1.91 (4)° in the other. The crystal packing is stabilized only by van der Waals inter-actions.

Entities:  

Year:  2013        PMID: 24109354      PMCID: PMC3793767          DOI: 10.1107/S1600536813017960

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thio­phene derivatives, see: Mabkhot et al. (2013 ▶); Mishra et al. (2011 ▶). For the synthesis of fused heterocyclic compounds, see: Cornel & Kirsch (2001 ▶); Mashraqui et al. (1999 ▶). For crystal data for related thio­phene compounds, see: Gunasekaran et al. (2009 ▶); Mashraqui et al. (2004 ▶).

Experimental

Crystal data

C10H6N2S2 M = 218.31 Triclinic, a = 7.2573 (11) Å b = 10.1538 (15) Å c = 13.665 (2) Å α = 94.467 (3)° β = 99.120 (4)° γ = 95.850 (4)° V = 984.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.50 mm−1 T = 273 K 0.37 × 0.15 × 0.11 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.838, T max = 0.947 13821 measured reflections 4912 independent reflections 3074 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.132 S = 0.99 4912 reflections 257 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813017960/rz5077sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813017960/rz5077Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813017960/rz5077Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H6N2S2Z = 4
Mr = 218.31F(000) = 448
Triclinic, P1Dx = 1.473 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2573 (11) ÅCell parameters from 1631 reflections
b = 10.1538 (15) Åθ = 1.5–28.4°
c = 13.665 (2) ŵ = 0.50 mm1
α = 94.467 (3)°T = 273 K
β = 99.120 (4)°Block, brown
γ = 95.850 (4)°0.37 × 0.15 × 0.11 mm
V = 984.5 (3) Å3
Bruker SMART APEX CCD area-detector diffractometer4912 independent reflections
Radiation source: fine-focus sealed tube3074 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.053
ω scanθmax = 28.4°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −9→9
Tmin = 0.838, Tmax = 0.947k = −13→13
13821 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0565P)2] where P = (Fo2 + 2Fc2)/3
4912 reflections(Δ/σ)max = 0.001
257 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.18703 (11)0.32325 (7)0.83846 (5)0.0460 (2)
S20.24419 (10)0.62763 (7)0.91346 (5)0.0435 (2)
S30.38935 (11)1.16617 (7)0.61752 (6)0.0477 (2)
S40.37946 (11)0.89010 (8)0.70279 (5)0.0473 (2)
N10.1667 (4)−0.0317 (3)0.8989 (2)0.0718 (9)
N20.3550 (4)0.8848 (3)1.1405 (2)0.0706 (9)
N30.2705 (5)1.3690 (3)0.4034 (3)0.0902 (11)
N40.2415 (4)0.5277 (3)0.6753 (2)0.0827 (10)
C10.1990 (4)0.2211 (3)0.9361 (2)0.0424 (7)
C20.2290 (4)0.2874 (3)1.0280 (2)0.0381 (6)
C30.2441 (3)0.4276 (2)1.02172 (19)0.0336 (6)
C40.2755 (4)0.5432 (3)1.0910 (2)0.0384 (6)
C50.2804 (4)0.6552 (3)1.0431 (2)0.0396 (7)
C60.2251 (4)0.4597 (3)0.9243 (2)0.0371 (6)
C70.1799 (4)0.0807 (3)0.9144 (2)0.0520 (8)
C80.2489 (4)0.2224 (3)1.1236 (2)0.0471 (7)
H8A0.25820.12941.10970.071*
H8B0.14100.23321.15470.071*
H8C0.36010.26321.16740.071*
C90.3013 (4)0.5424 (3)1.20166 (19)0.0447 (7)
H9A0.31110.63201.23190.067*
H9B0.41380.50391.22460.067*
H9C0.19540.49091.21960.067*
C100.3195 (4)0.7857 (3)1.0941 (2)0.0474 (7)
C110.2885 (4)1.1564 (3)0.4924 (2)0.0457 (7)
C120.2220 (4)1.0317 (3)0.4497 (2)0.0410 (7)
C130.2546 (3)0.9366 (3)0.52151 (18)0.0341 (6)
C140.2139 (4)0.7963 (3)0.5223 (2)0.0389 (6)
C150.2732 (4)0.7597 (3)0.6151 (2)0.0441 (7)
C160.3434 (4)0.9965 (3)0.6131 (2)0.0378 (6)
C170.2795 (5)1.2748 (3)0.4434 (3)0.0590 (9)
C180.1286 (4)0.9979 (3)0.34337 (19)0.0452 (7)
H18A0.10821.07830.31280.068*
H18B0.01020.94510.34120.068*
H18C0.20770.94860.30810.068*
C190.1235 (4)0.6996 (3)0.4357 (2)0.0453 (7)
H19A0.12130.61080.45540.068*
H19B0.19380.70760.38220.068*
H19C−0.00280.71840.41400.068*
C200.2548 (4)0.6297 (3)0.6466 (2)0.0546 (8)
U11U22U33U12U13U23
S10.0602 (5)0.0394 (4)0.0360 (4)0.0018 (3)0.0067 (3)−0.0035 (3)
S20.0552 (5)0.0359 (4)0.0397 (4)0.0042 (3)0.0079 (3)0.0063 (3)
S30.0538 (5)0.0395 (4)0.0488 (5)0.0045 (3)0.0102 (4)−0.0032 (3)
S40.0534 (5)0.0508 (5)0.0343 (4)0.0019 (4)0.0001 (3)0.0040 (3)
N10.100 (2)0.0396 (16)0.075 (2)−0.0008 (16)0.0267 (18)−0.0085 (15)
N20.096 (2)0.0385 (16)0.074 (2)0.0009 (15)0.0168 (18)−0.0122 (15)
N30.126 (3)0.067 (2)0.096 (3)0.034 (2)0.044 (2)0.036 (2)
N40.094 (2)0.059 (2)0.083 (2)−0.0117 (17)−0.0187 (18)0.0285 (18)
C10.0446 (16)0.0374 (16)0.0437 (17)0.0029 (13)0.0064 (13)−0.0007 (13)
C20.0362 (15)0.0378 (15)0.0390 (16)0.0041 (12)0.0023 (12)0.0039 (13)
C30.0340 (14)0.0327 (14)0.0331 (15)0.0031 (11)0.0038 (11)0.0025 (12)
C40.0351 (15)0.0411 (16)0.0375 (16)0.0034 (12)0.0030 (12)0.0016 (13)
C50.0426 (16)0.0355 (15)0.0387 (16)0.0024 (12)0.0038 (13)−0.0002 (13)
C60.0396 (15)0.0341 (15)0.0364 (16)0.0044 (12)0.0046 (12)−0.0001 (12)
C70.063 (2)0.0372 (17)0.055 (2)0.0003 (15)0.0145 (16)−0.0051 (15)
C80.0604 (19)0.0353 (16)0.0450 (18)0.0048 (14)0.0022 (14)0.0143 (14)
C90.0579 (18)0.0425 (16)0.0303 (15)0.0027 (14)0.0015 (13)−0.0020 (13)
C100.0543 (18)0.0351 (16)0.0538 (19)0.0085 (14)0.0114 (15)0.0007 (15)
C110.0480 (17)0.0458 (18)0.0489 (18)0.0131 (14)0.0175 (14)0.0102 (15)
C120.0351 (15)0.0507 (18)0.0424 (17)0.0122 (13)0.0152 (13)0.0097 (14)
C130.0290 (13)0.0421 (16)0.0314 (15)0.0047 (12)0.0072 (11)0.0005 (12)
C140.0345 (14)0.0447 (17)0.0368 (16)0.0044 (12)0.0060 (12)0.0004 (13)
C150.0454 (16)0.0437 (17)0.0422 (17)0.0028 (13)0.0050 (13)0.0048 (14)
C160.0367 (15)0.0398 (15)0.0370 (16)0.0055 (12)0.0077 (12)−0.0003 (12)
C170.070 (2)0.050 (2)0.067 (2)0.0178 (17)0.0297 (19)0.0122 (18)
C180.0427 (16)0.063 (2)0.0307 (15)0.0129 (14)0.0007 (13)0.0102 (14)
C190.0459 (17)0.0402 (16)0.0440 (17)−0.0025 (13)0.0009 (13)−0.0084 (13)
C200.057 (2)0.050 (2)0.052 (2)−0.0026 (16)−0.0051 (15)0.0129 (16)
S1—C61.714 (3)C8—H8A0.9600
S1—C11.750 (3)C8—H8B0.9600
S2—C61.716 (3)C8—H8C0.9600
S2—C51.745 (3)C9—H9A0.9600
S3—C161.716 (3)C9—H9B0.9600
S3—C111.741 (3)C9—H9C0.9600
S4—C161.703 (3)C11—C121.360 (4)
S4—C151.742 (3)C11—C171.423 (4)
N1—C71.136 (4)C12—C131.439 (3)
N2—C101.130 (4)C12—C181.501 (4)
N3—C171.140 (4)C13—C161.377 (3)
N4—C201.137 (4)C13—C141.427 (4)
C1—C21.351 (4)C14—C151.365 (4)
C1—C71.421 (4)C14—C191.495 (4)
C2—C31.428 (3)C15—C201.420 (4)
C2—C81.502 (4)C18—H18A0.9600
C3—C61.384 (3)C18—H18B0.9600
C3—C41.425 (4)C18—H18C0.9600
C4—C51.356 (4)C19—H19A0.9600
C4—C91.495 (4)C19—H19B0.9600
C5—C101.428 (4)C19—H19C0.9600
C6—S1—C189.13 (13)H9B—C9—H9C109.5
C6—S2—C588.80 (13)N2—C10—C5175.0 (4)
C16—S3—C1188.88 (14)C12—C11—C17125.3 (3)
C16—S4—C1588.73 (13)C12—C11—S3115.1 (2)
C2—C1—C7126.0 (3)C17—C11—S3119.6 (2)
C2—C1—S1114.5 (2)C11—C12—C13110.0 (3)
C7—C1—S1119.5 (2)C11—C12—C18125.1 (3)
C1—C2—C3110.7 (2)C13—C12—C18124.9 (3)
C1—C2—C8124.6 (3)C16—C13—C14111.9 (2)
C3—C2—C8124.6 (2)C16—C13—C12112.0 (2)
C6—C3—C4111.9 (2)C14—C13—C12136.0 (3)
C6—C3—C2112.3 (2)C15—C14—C13110.0 (2)
C4—C3—C2135.9 (2)C15—C14—C19123.4 (3)
C5—C4—C3110.8 (2)C13—C14—C19126.5 (3)
C5—C4—C9124.2 (3)C14—C15—C20127.2 (3)
C3—C4—C9125.0 (2)C14—C15—S4114.8 (2)
C4—C5—C10123.0 (3)C20—C15—S4118.0 (2)
C4—C5—S2114.7 (2)C13—C16—S4114.5 (2)
C10—C5—S2122.2 (2)C13—C16—S3114.0 (2)
C3—C6—S1113.3 (2)S4—C16—S3131.48 (17)
C3—C6—S2113.8 (2)N3—C17—C11179.2 (4)
S1—C6—S2132.84 (17)C12—C18—H18A109.5
N1—C7—C1178.6 (4)C12—C18—H18B109.5
C2—C8—H8A109.5H18A—C18—H18B109.5
C2—C8—H8B109.5C12—C18—H18C109.5
H8A—C8—H8B109.5H18A—C18—H18C109.5
C2—C8—H8C109.5H18B—C18—H18C109.5
H8A—C8—H8C109.5C14—C19—H19A109.5
H8B—C8—H8C109.5C14—C19—H19B109.5
C4—C9—H9A109.5H19A—C19—H19B109.5
C4—C9—H9B109.5C14—C19—H19C109.5
H9A—C9—H9B109.5H19A—C19—H19C109.5
C4—C9—H9C109.5H19B—C19—H19C109.5
H9A—C9—H9C109.5N4—C20—C15177.4 (4)
C6—S1—C1—C20.4 (2)C16—S3—C11—C120.6 (2)
C6—S1—C1—C7−178.9 (2)C16—S3—C11—C17180.0 (2)
C7—C1—C2—C3179.1 (3)C17—C11—C12—C13−179.8 (3)
S1—C1—C2—C3−0.1 (3)S3—C11—C12—C13−0.4 (3)
C7—C1—C2—C80.5 (5)C17—C11—C12—C180.3 (5)
S1—C1—C2—C8−178.6 (2)S3—C11—C12—C18179.7 (2)
C1—C2—C3—C6−0.3 (3)C11—C12—C13—C160.0 (3)
C8—C2—C3—C6178.3 (2)C18—C12—C13—C16179.8 (2)
C1—C2—C3—C4−179.5 (3)C11—C12—C13—C14178.1 (3)
C8—C2—C3—C4−1.0 (5)C18—C12—C13—C14−2.0 (5)
C6—C3—C4—C5−0.6 (3)C16—C13—C14—C150.6 (3)
C2—C3—C4—C5178.7 (3)C12—C13—C14—C15−177.5 (3)
C6—C3—C4—C9179.9 (2)C16—C13—C14—C19−178.2 (2)
C2—C3—C4—C9−0.9 (5)C12—C13—C14—C193.7 (5)
C3—C4—C5—C10−176.6 (3)C13—C14—C15—C20178.6 (3)
C9—C4—C5—C103.0 (4)C19—C14—C15—C20−2.5 (5)
C3—C4—C5—S20.9 (3)C13—C14—C15—S4−0.4 (3)
C9—C4—C5—S2−179.5 (2)C19—C14—C15—S4178.5 (2)
C6—S2—C5—C4−0.8 (2)C16—S4—C15—C140.1 (2)
C6—S2—C5—C10176.8 (3)C16—S4—C15—C20−179.0 (2)
C4—C3—C6—S1180.00 (18)C14—C13—C16—S4−0.6 (3)
C2—C3—C6—S10.5 (3)C12—C13—C16—S4177.97 (17)
C4—C3—C6—S20.0 (3)C14—C13—C16—S3−178.12 (18)
C2—C3—C6—S2−179.51 (18)C12—C13—C16—S30.5 (3)
C1—S1—C6—C3−0.5 (2)C15—S4—C16—C130.3 (2)
C1—S1—C6—S2179.6 (2)C15—S4—C16—S3177.3 (2)
C5—S2—C6—C30.5 (2)C11—S3—C16—C13−0.6 (2)
C5—S2—C6—S1−179.6 (2)C11—S3—C16—S4−177.5 (2)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diethyl 3,4-bis(acetoxy-meth-yl)thieno[2,3-b]thio-phene-2,5-dicarboxyl-ate.

Authors:  B Gunasekaran; R Sureshbabu; A K Mohanakrishnan; G Chakkaravarthi; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-12

3.  Synthesis of Thieno[2,3-b]thiophene Containing Bis-Heterocycles-Novel Pharmacophores.

Authors:  Yahia Nasser Mabkhot; Assem Barakat; Abdullah Mohammed Al-Majid; Muhammad Iqbal Choudhary
Journal:  Int J Mol Sci       Date:  2013-03-12       Impact factor: 5.923

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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