Literature DB >> 24109337

N'-(2,4-Di-nitro-phen-yl)acetohydrazide monohydrate.

Manel Essid1, Houda Marouani, Salem S Al-Deyab, Mohamed Rzaigui.   

Abstract

In the crystal structure of the title compound, C8H8N4O5·H2O, the organic and lattice water mol-ecules are linked together via N-H⋯O and O-H⋯O hydrogen bonds. A C-H⋯O inter-action is also observed between the organic mol-ecules. These hydrogen bonds and inter-actions lead to the formation of a three-dimensional network. An intra-molecular N-H⋯O hydrogen bond also occurs. The dihedral angle between the acetyl group and the almost planar hydrazide moiety [maximum deviation from the least-squares plane is 0.209 (2) Å for one of the nitro O atoms] is 88.5 (3)°.

Entities:  

Year:  2013        PMID: 24109337      PMCID: PMC3793750          DOI: 10.1107/S1600536813018916

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of hydrazines and hydrazones, see: Zahid & Sherazi (1997 ▶); Monfared et al. (2007 ▶). For a related crystal structure, see: Okabe et al. (1993 ▶). For hydrogen-bond graph-set motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C8H8N4O5·H2O M = 258.20 Monoclinic, a = 7.702 (2) Å b = 7.057 (3) Å c = 21.550 (4) Å β = 109.044 (19)° V = 1107.3 (6) Å3 Z = 4 Ag Kα radiation λ = 0.56083 Å μ = 0.08 mm−1 T = 293 K 0.5 × 0.4 × 0.3 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 7469 measured reflections 5411 independent reflections 2771 reflections with I > 2σ(I) R int = 0.064 2 standard reflections every 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.195 S = 0.98 5411 reflections 181 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813018916/pv2637sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018916/pv2637Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813018916/pv2637Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H8N4O5·H2OF(000) = 536
Mr = 258.20Dx = 1.549 Mg m3
Monoclinic, P21/cAg Kα radiation, λ = 0.56083 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 7.702 (2) Åθ = 9–11°
b = 7.057 (3) ŵ = 0.08 mm1
c = 21.550 (4) ÅT = 293 K
β = 109.044 (19)°Prism, yellow
V = 1107.3 (6) Å30.5 × 0.4 × 0.3 mm
Z = 4
Enraf–Nonius CAD-4 diffractometerRint = 0.064
Radiation source: fine-focus sealed tubeθmax = 28.0°, θmin = 2.2°
Graphite monochromatorh = −12→12
non–profiled ω scansk = −11→2
7469 measured reflectionsl = −36→14
5411 independent reflections2 standard reflections every 120 min
2771 reflections with I > 2σ(I) intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.071H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.195w = 1/[σ2(Fo2) + (0.0627P)2 + 0.2081P] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max = 0.004
5411 reflectionsΔρmax = 0.25 e Å3
181 parametersΔρmin = −0.23 e Å3
3 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.027 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
OW0.8341 (3)0.6774 (3)0.23696 (8)0.0526 (5)
H1W0.784 (4)0.583 (3)0.2497 (13)0.088 (11)*
H2W0.827 (4)0.672 (5)0.1972 (6)0.091 (11)*
H2N0.894 (4)0.171 (4)0.1927 (14)0.073 (9)*
H1N0.762 (3)−0.050 (4)0.2501 (11)0.052 (7)*
C10.6447 (3)0.1614 (3)0.12985 (10)0.0332 (4)
N20.7775 (3)0.1390 (3)0.18850 (8)0.0416 (5)
C20.6778 (3)0.2383 (3)0.07398 (10)0.0347 (5)
C40.3649 (3)0.2020 (3)0.00937 (10)0.0387 (5)
N30.8583 (3)0.2980 (3)0.07563 (10)0.0467 (5)
N40.2219 (3)0.2185 (3)−0.05403 (10)0.0496 (5)
C30.5376 (3)0.2593 (3)0.01484 (10)0.0383 (5)
H30.56150.3125−0.02100.046*
N10.7353 (3)0.0698 (3)0.24205 (9)0.0410 (5)
C60.4620 (3)0.1034 (3)0.12134 (10)0.0385 (5)
H60.43490.05150.15680.046*
C50.3250 (3)0.1218 (3)0.06262 (11)0.0422 (5)
H50.20650.08150.05800.051*
O50.6823 (3)0.3600 (3)0.27355 (9)0.0607 (5)
C70.6972 (3)0.1892 (3)0.28405 (10)0.0388 (5)
O40.2556 (3)0.3098 (3)−0.09698 (8)0.0683 (6)
O20.8788 (3)0.3578 (3)0.02501 (9)0.0723 (6)
O10.9859 (2)0.2867 (3)0.12714 (9)0.0685 (6)
C80.6708 (3)0.1000 (4)0.34342 (10)0.0492 (6)
H8A0.76720.14030.38200.074*
H8B0.6741−0.03550.33970.074*
H8C0.55420.13780.34650.074*
O30.0748 (3)0.1398 (3)−0.06187 (10)0.0722 (6)
U11U22U33U12U13U23
OW0.0634 (11)0.0483 (11)0.0435 (10)−0.0030 (9)0.0139 (9)0.0001 (8)
C10.0400 (11)0.0272 (10)0.0339 (10)0.0000 (9)0.0142 (9)−0.0027 (9)
N20.0431 (10)0.0511 (12)0.0333 (9)−0.0026 (10)0.0161 (8)0.0035 (9)
C20.0404 (11)0.0309 (11)0.0367 (10)−0.0045 (9)0.0179 (9)−0.0028 (9)
C40.0432 (12)0.0331 (11)0.0358 (10)0.0044 (10)0.0074 (9)−0.0024 (9)
N30.0510 (12)0.0503 (12)0.0443 (10)−0.0083 (10)0.0234 (10)0.0013 (10)
N40.0566 (13)0.0416 (11)0.0436 (11)0.0072 (10)0.0068 (10)−0.0066 (10)
C30.0543 (14)0.0305 (11)0.0339 (10)−0.0001 (10)0.0194 (10)0.0016 (9)
N10.0534 (11)0.0387 (11)0.0342 (9)0.0053 (9)0.0188 (8)0.0067 (9)
C60.0458 (12)0.0372 (12)0.0390 (11)−0.0009 (10)0.0226 (10)0.0023 (10)
C50.0395 (12)0.0386 (13)0.0498 (13)0.0002 (10)0.0166 (10)−0.0039 (10)
O50.0877 (13)0.0382 (10)0.0690 (12)0.0093 (9)0.0431 (11)0.0063 (9)
C70.0399 (11)0.0404 (13)0.0378 (11)0.0004 (10)0.0152 (9)0.0037 (10)
O40.0883 (14)0.0697 (13)0.0383 (9)0.0014 (11)0.0090 (9)0.0087 (10)
O20.0695 (12)0.1000 (16)0.0573 (11)−0.0166 (11)0.0342 (10)0.0137 (11)
O10.0465 (10)0.1019 (16)0.0551 (11)−0.0231 (10)0.0138 (9)0.0105 (11)
C80.0548 (14)0.0557 (16)0.0397 (12)0.0029 (12)0.0188 (11)0.0065 (11)
O30.0496 (10)0.0774 (14)0.0732 (13)−0.0013 (11)−0.0025 (9)−0.0012 (11)
OW—H1W0.856 (10)N4—O31.223 (3)
OW—H2W0.841 (9)N4—O41.224 (3)
C1—N21.351 (3)C3—H30.9300
C1—C21.418 (3)N1—C71.338 (3)
C1—C61.419 (3)N1—H1N0.88 (3)
N2—N11.386 (2)C6—C51.364 (3)
N2—H2N0.90 (3)C6—H60.9300
C2—C31.384 (3)C5—H50.9300
C2—N31.442 (3)O5—C71.225 (3)
C4—C31.358 (3)C7—C81.498 (3)
C4—C51.400 (3)C8—H8A0.9600
C4—N41.453 (3)C8—H8B0.9600
N3—O11.222 (2)C8—H8C0.9600
N3—O21.227 (2)
H1W—OW—H2W114 (2)C4—C3—H3120.1
N2—C1—C2123.22 (18)C2—C3—H3120.1
N2—C1—C6120.24 (18)C7—N1—N2120.3 (2)
C2—C1—C6116.53 (18)C7—N1—H1N124.5 (16)
C1—N2—N1120.55 (18)N2—N1—H1N113.5 (16)
C1—N2—H2N119.4 (18)C5—C6—C1121.78 (19)
N1—N2—H2N120.0 (18)C5—C6—H6119.1
C3—C2—C1121.36 (18)C1—C6—H6119.1
C3—C2—N3116.61 (18)C6—C5—C4119.25 (19)
C1—C2—N3122.03 (18)C6—C5—H5120.4
C3—C4—C5121.3 (2)C4—C5—H5120.4
C3—C4—N4118.6 (2)O5—C7—N1121.5 (2)
C5—C4—N4120.1 (2)O5—C7—C8122.7 (2)
O1—N3—O2122.08 (19)N1—C7—C8115.7 (2)
O1—N3—C2119.13 (17)C7—C8—H8A109.5
O2—N3—C2118.79 (19)C7—C8—H8B109.5
O3—N4—O4123.4 (2)H8A—C8—H8B109.5
O3—N4—C4118.5 (2)C7—C8—H8C109.5
O4—N4—C4118.1 (2)H8A—C8—H8C109.5
C4—C3—C2119.74 (19)H8B—C8—H8C109.5
D—H···AD—HH···AD···AD—H···A
OW—H1W···O50.86 (1)1.91 (1)2.759 (3)175 (3)
OW—H2W···O4i0.84 (1)2.05 (1)2.868 (3)165 (3)
N1—H1N···OWii0.88 (3)2.04 (3)2.883 (3)160 (2)
N2—H2N···O10.90 (3)1.96 (3)2.607 (2)128 (2)
N2—H2N···OWiii0.90 (3)2.15 (3)2.910 (3)142 (2)
C6—H6···O5iv0.932.403.310 (3)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
OW—H1W⋯O50.86 (1)1.91 (1)2.759 (3)175 (3)
OW—H2W⋯O4i 0.84 (1)2.05 (1)2.868 (3)165 (3)
N1—H1N⋯OW ii 0.88 (3)2.04 (3)2.883 (3)160 (2)
N2—H2N⋯O10.90 (3)1.96 (3)2.607 (2)128 (2)
N2—H2N⋯OW iii 0.90 (3)2.15 (3)2.910 (3)142 (2)
C6—H6⋯O5iv 0.932.403.310 (3)165

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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