| Literature DB >> 24109337 |
Manel Essid1, Houda Marouani, Salem S Al-Deyab, Mohamed Rzaigui.
Abstract
In the crystal structure of the title compound, C8H8N4O5·H2O, the organic and lattice water mol-ecules are linked together via N-H⋯O and O-H⋯O hydrogen bonds. A C-H⋯O inter-action is also observed between the organic mol-ecules. These hydrogen bonds and inter-actions lead to the formation of a three-dimensional network. An intra-molecular N-H⋯O hydrogen bond also occurs. The dihedral angle between the acetyl group and the almost planar hydrazide moiety [maximum deviation from the least-squares plane is 0.209 (2) Å for one of the nitro O atoms] is 88.5 (3)°.Entities:
Year: 2013 PMID: 24109337 PMCID: PMC3793750 DOI: 10.1107/S1600536813018916
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H8N4O5·H2O | |
| Monoclinic, | Ag |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| θ = 9–11° | |
| µ = 0.08 mm−1 | |
| β = 109.044 (19)° | Prism, yellow |
| 0.5 × 0.4 × 0.3 mm | |
| Enraf–Nonius CAD-4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 28.0°, θmin = 2.2° |
| Graphite monochromator | |
| non–profiled ω scans | |
| 7469 measured reflections | |
| 5411 independent reflections | 2 standard reflections every 120 min |
| 2771 reflections with | intensity decay: 1% |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.004 | |
| 5411 reflections | Δρmax = 0.25 e Å−3 |
| 181 parameters | Δρmin = −0.23 e Å−3 |
| 3 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.027 (4) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| OW | 0.8341 (3) | 0.6774 (3) | 0.23696 (8) | 0.0526 (5) | |
| H1W | 0.784 (4) | 0.583 (3) | 0.2497 (13) | 0.088 (11)* | |
| H2W | 0.827 (4) | 0.672 (5) | 0.1972 (6) | 0.091 (11)* | |
| H2N | 0.894 (4) | 0.171 (4) | 0.1927 (14) | 0.073 (9)* | |
| H1N | 0.762 (3) | −0.050 (4) | 0.2501 (11) | 0.052 (7)* | |
| C1 | 0.6447 (3) | 0.1614 (3) | 0.12985 (10) | 0.0332 (4) | |
| N2 | 0.7775 (3) | 0.1390 (3) | 0.18850 (8) | 0.0416 (5) | |
| C2 | 0.6778 (3) | 0.2383 (3) | 0.07398 (10) | 0.0347 (5) | |
| C4 | 0.3649 (3) | 0.2020 (3) | 0.00937 (10) | 0.0387 (5) | |
| N3 | 0.8583 (3) | 0.2980 (3) | 0.07563 (10) | 0.0467 (5) | |
| N4 | 0.2219 (3) | 0.2185 (3) | −0.05403 (10) | 0.0496 (5) | |
| C3 | 0.5376 (3) | 0.2593 (3) | 0.01484 (10) | 0.0383 (5) | |
| H3 | 0.5615 | 0.3125 | −0.0210 | 0.046* | |
| N1 | 0.7353 (3) | 0.0698 (3) | 0.24205 (9) | 0.0410 (5) | |
| C6 | 0.4620 (3) | 0.1034 (3) | 0.12134 (10) | 0.0385 (5) | |
| H6 | 0.4349 | 0.0515 | 0.1568 | 0.046* | |
| C5 | 0.3250 (3) | 0.1218 (3) | 0.06262 (11) | 0.0422 (5) | |
| H5 | 0.2065 | 0.0815 | 0.0580 | 0.051* | |
| O5 | 0.6823 (3) | 0.3600 (3) | 0.27355 (9) | 0.0607 (5) | |
| C7 | 0.6972 (3) | 0.1892 (3) | 0.28405 (10) | 0.0388 (5) | |
| O4 | 0.2556 (3) | 0.3098 (3) | −0.09698 (8) | 0.0683 (6) | |
| O2 | 0.8788 (3) | 0.3578 (3) | 0.02501 (9) | 0.0723 (6) | |
| O1 | 0.9859 (2) | 0.2867 (3) | 0.12714 (9) | 0.0685 (6) | |
| C8 | 0.6708 (3) | 0.1000 (4) | 0.34342 (10) | 0.0492 (6) | |
| H8A | 0.7672 | 0.1403 | 0.3820 | 0.074* | |
| H8B | 0.6741 | −0.0355 | 0.3397 | 0.074* | |
| H8C | 0.5542 | 0.1378 | 0.3465 | 0.074* | |
| O3 | 0.0748 (3) | 0.1398 (3) | −0.06187 (10) | 0.0722 (6) |
| OW | 0.0634 (11) | 0.0483 (11) | 0.0435 (10) | −0.0030 (9) | 0.0139 (9) | 0.0001 (8) |
| C1 | 0.0400 (11) | 0.0272 (10) | 0.0339 (10) | 0.0000 (9) | 0.0142 (9) | −0.0027 (9) |
| N2 | 0.0431 (10) | 0.0511 (12) | 0.0333 (9) | −0.0026 (10) | 0.0161 (8) | 0.0035 (9) |
| C2 | 0.0404 (11) | 0.0309 (11) | 0.0367 (10) | −0.0045 (9) | 0.0179 (9) | −0.0028 (9) |
| C4 | 0.0432 (12) | 0.0331 (11) | 0.0358 (10) | 0.0044 (10) | 0.0074 (9) | −0.0024 (9) |
| N3 | 0.0510 (12) | 0.0503 (12) | 0.0443 (10) | −0.0083 (10) | 0.0234 (10) | 0.0013 (10) |
| N4 | 0.0566 (13) | 0.0416 (11) | 0.0436 (11) | 0.0072 (10) | 0.0068 (10) | −0.0066 (10) |
| C3 | 0.0543 (14) | 0.0305 (11) | 0.0339 (10) | −0.0001 (10) | 0.0194 (10) | 0.0016 (9) |
| N1 | 0.0534 (11) | 0.0387 (11) | 0.0342 (9) | 0.0053 (9) | 0.0188 (8) | 0.0067 (9) |
| C6 | 0.0458 (12) | 0.0372 (12) | 0.0390 (11) | −0.0009 (10) | 0.0226 (10) | 0.0023 (10) |
| C5 | 0.0395 (12) | 0.0386 (13) | 0.0498 (13) | 0.0002 (10) | 0.0166 (10) | −0.0039 (10) |
| O5 | 0.0877 (13) | 0.0382 (10) | 0.0690 (12) | 0.0093 (9) | 0.0431 (11) | 0.0063 (9) |
| C7 | 0.0399 (11) | 0.0404 (13) | 0.0378 (11) | 0.0004 (10) | 0.0152 (9) | 0.0037 (10) |
| O4 | 0.0883 (14) | 0.0697 (13) | 0.0383 (9) | 0.0014 (11) | 0.0090 (9) | 0.0087 (10) |
| O2 | 0.0695 (12) | 0.1000 (16) | 0.0573 (11) | −0.0166 (11) | 0.0342 (10) | 0.0137 (11) |
| O1 | 0.0465 (10) | 0.1019 (16) | 0.0551 (11) | −0.0231 (10) | 0.0138 (9) | 0.0105 (11) |
| C8 | 0.0548 (14) | 0.0557 (16) | 0.0397 (12) | 0.0029 (12) | 0.0188 (11) | 0.0065 (11) |
| O3 | 0.0496 (10) | 0.0774 (14) | 0.0732 (13) | −0.0013 (11) | −0.0025 (9) | −0.0012 (11) |
| OW—H1W | 0.856 (10) | N4—O3 | 1.223 (3) |
| OW—H2W | 0.841 (9) | N4—O4 | 1.224 (3) |
| C1—N2 | 1.351 (3) | C3—H3 | 0.9300 |
| C1—C2 | 1.418 (3) | N1—C7 | 1.338 (3) |
| C1—C6 | 1.419 (3) | N1—H1N | 0.88 (3) |
| N2—N1 | 1.386 (2) | C6—C5 | 1.364 (3) |
| N2—H2N | 0.90 (3) | C6—H6 | 0.9300 |
| C2—C3 | 1.384 (3) | C5—H5 | 0.9300 |
| C2—N3 | 1.442 (3) | O5—C7 | 1.225 (3) |
| C4—C3 | 1.358 (3) | C7—C8 | 1.498 (3) |
| C4—C5 | 1.400 (3) | C8—H8A | 0.9600 |
| C4—N4 | 1.453 (3) | C8—H8B | 0.9600 |
| N3—O1 | 1.222 (2) | C8—H8C | 0.9600 |
| N3—O2 | 1.227 (2) | ||
| H1W—OW—H2W | 114 (2) | C4—C3—H3 | 120.1 |
| N2—C1—C2 | 123.22 (18) | C2—C3—H3 | 120.1 |
| N2—C1—C6 | 120.24 (18) | C7—N1—N2 | 120.3 (2) |
| C2—C1—C6 | 116.53 (18) | C7—N1—H1N | 124.5 (16) |
| C1—N2—N1 | 120.55 (18) | N2—N1—H1N | 113.5 (16) |
| C1—N2—H2N | 119.4 (18) | C5—C6—C1 | 121.78 (19) |
| N1—N2—H2N | 120.0 (18) | C5—C6—H6 | 119.1 |
| C3—C2—C1 | 121.36 (18) | C1—C6—H6 | 119.1 |
| C3—C2—N3 | 116.61 (18) | C6—C5—C4 | 119.25 (19) |
| C1—C2—N3 | 122.03 (18) | C6—C5—H5 | 120.4 |
| C3—C4—C5 | 121.3 (2) | C4—C5—H5 | 120.4 |
| C3—C4—N4 | 118.6 (2) | O5—C7—N1 | 121.5 (2) |
| C5—C4—N4 | 120.1 (2) | O5—C7—C8 | 122.7 (2) |
| O1—N3—O2 | 122.08 (19) | N1—C7—C8 | 115.7 (2) |
| O1—N3—C2 | 119.13 (17) | C7—C8—H8A | 109.5 |
| O2—N3—C2 | 118.79 (19) | C7—C8—H8B | 109.5 |
| O3—N4—O4 | 123.4 (2) | H8A—C8—H8B | 109.5 |
| O3—N4—C4 | 118.5 (2) | C7—C8—H8C | 109.5 |
| O4—N4—C4 | 118.1 (2) | H8A—C8—H8C | 109.5 |
| C4—C3—C2 | 119.74 (19) | H8B—C8—H8C | 109.5 |
| H··· | ||||
| O | 0.86 (1) | 1.91 (1) | 2.759 (3) | 175 (3) |
| O | 0.84 (1) | 2.05 (1) | 2.868 (3) | 165 (3) |
| N1—H1 | 0.88 (3) | 2.04 (3) | 2.883 (3) | 160 (2) |
| N2—H2 | 0.90 (3) | 1.96 (3) | 2.607 (2) | 128 (2) |
| N2—H2 | 0.90 (3) | 2.15 (3) | 2.910 (3) | 142 (2) |
| C6—H6···O5iv | 0.93 | 2.40 | 3.310 (3) | 165 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O | 0.86 (1) | 1.91 (1) | 2.759 (3) | 175 (3) |
| O | 0.84 (1) | 2.05 (1) | 2.868 (3) | 165 (3) |
| N1—H1 | 0.88 (3) | 2.04 (3) | 2.883 (3) | 160 (2) |
| N2—H2 | 0.90 (3) | 1.96 (3) | 2.607 (2) | 128 (2) |
| N2—H2 | 0.90 (3) | 2.15 (3) | 2.910 (3) | 142 (2) |
| C6—H6⋯O5iv | 0.93 | 2.40 | 3.310 (3) | 165 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .