Literature DB >> 24109332

Ethyl 2-(5-meth-oxy-2-methyl-1H-indol-3-yl)acetate.

Shaaban K Mohamed1, Joel T Mague, Mehmet Akkurt, Alaa A Hassan, Mustafa R Albayati.   

Abstract

In the title compound, C14H17NO3, the nine-membered 1H-indole ring system is essentially planar [maximum deviation = 0.019 (1) Å]. In the crystal, mol-ecules are linked via N-H⋯O hydrogen bonds, forming chains along [001]. These chains are linked via C-H⋯O hydrogen bonds and C-H⋯π inter-actions, forming a two-dimensional network lying parallel to the ac plane.

Entities:  

Year:  2013        PMID: 24109332      PMCID: PMC3793745          DOI: 10.1107/S1600536813018618

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For medicinal applications of the drug indomethacin (systematic name: 2-{1-[(4-chloro­phen­yl)carbon­yl]-5-meth­oxy-2-methyl-1H-indol-3-yl}acetic acid), see: Paneth (1995 ▶); McIntyre et al. (2001 ▶); Abou-Ghannam et al. (2012 ▶). For the synthesis and reactions of indomethacin with other non-steroidal anti-inflammatory mol­ecules, see: Mohamed et al. (2012 ▶).

Experimental

Crystal data

C14H17NO3 M = 247.29 Monoclinic, a = 7.8117 (5) Å b = 17.1953 (12) Å c = 9.9003 (7) Å β = 106.756 (1)° V = 1273.39 (15) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.23 × 0.21 × 0.06 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶) T min = 0.84, T max = 1.00 22947 measured reflections 3374 independent reflections 2889 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.117 S = 1.08 3374 reflections 170 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg & Putz, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813018618/su2618sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018618/su2618Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813018618/su2618Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H17NO3F(000) = 528
Mr = 247.29Dx = 1.290 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9989 reflections
a = 7.8117 (5) Åθ = 2.4–29.1°
b = 17.1953 (12) ŵ = 0.09 mm1
c = 9.9003 (7) ÅT = 150 K
β = 106.756 (1)°Plate, colourless
V = 1273.39 (15) Å30.23 × 0.21 × 0.06 mm
Z = 4
Bruker SMART APEX CCD diffractometer3374 independent reflections
Radiation source: fine-focus sealed tube2889 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
Detector resolution: 8.3660 pixels mm-1θmax = 29.1°, θmin = 2.4°
φ and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −23→23
Tmin = 0.84, Tmax = 1.00l = −13→13
22947 measured reflections
Refinement on F2Primary atom site location: difference Fourier map
Least-squares matrix: fullSecondary atom site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: difference Fourier map
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.08 W = 1/[Σ2(Fo2) + (0.0539P)2 + 0.3155P] where P = (Fo2 + 2Fc2)/3
3374 reflections(Δ/σ)max < 0.001
170 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.24 e Å3
Experimental. Spectroscopic data for the title compound: IR (KBr cm-1): (C=O ester 1728), (NH 3317), (C—H aliphatic, 2833–2924), (C—H, Ar, 2975–3002). 1H-NMR: (DMSO-D6) δ at 1.3(t, 3H, CH3 of ethyl group), 4.0(q, 2H, –CH2 aliphatic in ethyl group), 2.3(s, 3H, CH3), 3.4(s, –CH2), 3.7(s, 3H, –OCH3), 10.8(s, 1H, –NH), 6.8(s, 1H, Ar), 6.6(d, 1H, Ar), 7.2(d, 1H, Ar). 13C-NMR: 171 (C=O ester), 11(CH3 in indole), 14(CH3 of ethyl group), 29(–CH2), 55 (–OCH3), 59(–CH2 of ethyl group). 99, 103, 109, 110, 128, 129, 133,152 (8 C, aromatics). There are two signals at 29 and 59 p.p.m. oriented downward in the DEPT spectrum confirming the existence of two –CH2 groups.
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.17116 (13)0.36046 (6)−0.24184 (10)0.0376 (3)
O20.75724 (12)0.08270 (5)−0.02263 (9)0.0312 (3)
O30.75501 (11)0.01325 (4)0.16773 (9)0.0251 (2)
N10.65214 (13)0.29386 (6)0.27056 (11)0.0264 (3)
C10.47230 (14)0.25588 (6)0.05968 (12)0.0216 (3)
C20.34868 (15)0.26677 (6)−0.07390 (13)0.0240 (3)
C30.29070 (16)0.34165 (7)−0.11378 (13)0.0282 (3)
C40.35262 (18)0.40558 (7)−0.02372 (15)0.0336 (4)
C50.47322 (17)0.39589 (7)0.10729 (15)0.0309 (3)
C60.53295 (15)0.32062 (6)0.14800 (13)0.0245 (3)
C70.09045 (18)0.29785 (9)−0.33106 (15)0.0367 (4)
C80.66375 (15)0.21415 (7)0.26458 (12)0.0243 (3)
C90.55670 (14)0.18869 (6)0.13595 (12)0.0220 (3)
C100.77677 (16)0.16917 (8)0.38672 (13)0.0312 (4)
C110.52395 (15)0.10556 (6)0.08854 (13)0.0258 (3)
C120.68958 (14)0.06698 (6)0.06967 (12)0.0224 (3)
C130.91945 (15)−0.02529 (7)0.16271 (13)0.0272 (3)
C140.98064 (19)−0.07392 (8)0.29348 (16)0.0395 (4)
H10.700 (2)0.3250 (10)0.347 (2)0.052 (5)*
H20.306200.22390−0.135000.0290*
H40.310300.45630−0.054100.0400*
H50.514400.439000.168000.0370*
H7A0.183000.26750−0.356100.0550*
H7B0.006000.31840−0.417000.0550*
H7C0.026600.26440−0.281600.0550*
H10A0.726400.117000.387100.0470*
H10B0.779600.196000.474700.0470*
H10C0.898500.165000.378600.0470*
H11A0.427800.10380−0.002000.0310*
H11B0.482500.076100.159100.0310*
H13A1.011700.013700.160000.0330*
H13B0.89690−0.058400.077600.0330*
H14A1.00740−0.040200.376700.0590*
H14B1.08850−0.102700.292400.0590*
H14C0.88610−0.110700.296900.0590*
U11U22U33U12U13U23
O10.0347 (5)0.0333 (5)0.0417 (5)0.0089 (4)0.0059 (4)0.0110 (4)
O20.0383 (5)0.0288 (4)0.0283 (4)0.0066 (4)0.0124 (4)0.0065 (3)
O30.0260 (4)0.0219 (4)0.0277 (4)0.0049 (3)0.0084 (3)0.0047 (3)
N10.0275 (5)0.0268 (5)0.0265 (5)−0.0049 (4)0.0104 (4)−0.0073 (4)
C10.0206 (5)0.0194 (5)0.0273 (5)−0.0005 (4)0.0111 (4)−0.0010 (4)
C20.0233 (5)0.0217 (5)0.0283 (6)0.0017 (4)0.0093 (4)−0.0001 (4)
C30.0258 (5)0.0269 (6)0.0340 (6)0.0052 (4)0.0122 (5)0.0067 (5)
C40.0348 (6)0.0200 (5)0.0503 (8)0.0051 (5)0.0191 (6)0.0048 (5)
C50.0352 (6)0.0196 (5)0.0432 (7)−0.0024 (5)0.0198 (6)−0.0048 (5)
C60.0251 (5)0.0222 (5)0.0299 (6)−0.0027 (4)0.0140 (4)−0.0039 (4)
C70.0297 (6)0.0455 (8)0.0335 (7)0.0111 (5)0.0071 (5)0.0055 (6)
C80.0227 (5)0.0268 (5)0.0255 (5)−0.0017 (4)0.0104 (4)−0.0018 (4)
C90.0199 (5)0.0205 (5)0.0265 (5)−0.0002 (4)0.0080 (4)−0.0006 (4)
C100.0282 (6)0.0394 (7)0.0249 (6)0.0023 (5)0.0058 (5)0.0005 (5)
C110.0216 (5)0.0191 (5)0.0345 (6)−0.0002 (4)0.0047 (4)−0.0003 (4)
C120.0239 (5)0.0164 (5)0.0243 (5)−0.0006 (4)0.0027 (4)−0.0016 (4)
C130.0244 (5)0.0247 (5)0.0323 (6)0.0060 (4)0.0080 (5)0.0028 (5)
C140.0364 (7)0.0369 (7)0.0444 (8)0.0134 (6)0.0106 (6)0.0145 (6)
O1—C31.3789 (16)C11—C121.5128 (16)
O1—C71.4198 (18)C13—C141.4990 (19)
O2—C121.2108 (15)C2—H20.9500
O3—C121.3309 (13)C4—H40.9500
O3—C131.4590 (15)C5—H50.9500
N1—C61.3782 (16)C7—H7A0.9800
N1—C81.3760 (16)C7—H7B0.9800
N1—H10.914 (18)C7—H7C0.9800
C1—C21.4072 (17)C10—H10A0.9800
C1—C61.4105 (15)C10—H10B0.9800
C1—C91.4327 (15)C10—H10C0.9800
C2—C31.3841 (16)C11—H11A0.9900
C3—C41.4102 (18)C11—H11B0.9900
C4—C51.376 (2)C13—H13A0.9900
C5—C61.3953 (16)C13—H13B0.9900
C8—C91.3779 (16)C14—H14A0.9800
C8—C101.4914 (17)C14—H14B0.9800
C9—C111.5033 (15)C14—H14C0.9800
C3—O1—C7117.11 (11)C5—C4—H4119.00
C12—O3—C13116.57 (9)C4—C5—H5121.00
C6—N1—C8109.32 (10)C6—C5—H5121.00
C6—N1—H1123.0 (11)O1—C7—H7A109.00
C8—N1—H1127.1 (11)O1—C7—H7B109.00
C2—C1—C6119.63 (10)O1—C7—H7C109.00
C6—C1—C9106.77 (10)H7A—C7—H7B109.00
C2—C1—C9133.59 (10)H7A—C7—H7C109.00
C1—C2—C3118.12 (10)H7B—C7—H7C109.00
O1—C3—C2124.03 (11)C8—C10—H10A109.00
O1—C3—C4114.61 (11)C8—C10—H10B109.00
C2—C3—C4121.36 (12)C8—C10—H10C109.00
C3—C4—C5121.23 (11)H10A—C10—H10B109.00
C4—C5—C6117.76 (12)H10A—C10—H10C109.00
C1—C6—C5121.90 (11)H10B—C10—H10C109.00
N1—C6—C5130.45 (11)C9—C11—H11A109.00
N1—C6—C1107.65 (9)C9—C11—H11B109.00
N1—C8—C9109.04 (10)C12—C11—H11A109.00
N1—C8—C10120.84 (11)C12—C11—H11B109.00
C9—C8—C10130.11 (11)H11A—C11—H11B108.00
C1—C9—C8107.18 (10)O3—C13—H13A110.00
C8—C9—C11126.44 (10)O3—C13—H13B110.00
C1—C9—C11126.24 (10)C14—C13—H13A110.00
C9—C11—C12112.39 (10)C14—C13—H13B110.00
O2—C12—O3123.10 (11)H13A—C13—H13B109.00
O2—C12—C11124.77 (10)C13—C14—H14A110.00
O3—C12—C11112.13 (10)C13—C14—H14B109.00
O3—C13—C14106.78 (10)C13—C14—H14C110.00
C1—C2—H2121.00H14A—C14—H14B109.00
C3—C2—H2121.00H14A—C14—H14C109.00
C3—C4—H4119.00H14B—C14—H14C109.00
C7—O1—C3—C26.53 (18)C6—C1—C9—C8−0.25 (13)
C7—O1—C3—C4−173.81 (12)C6—C1—C9—C11175.68 (11)
C13—O3—C12—O22.08 (16)C1—C2—C3—O1179.49 (11)
C13—O3—C12—C11−177.50 (9)C1—C2—C3—C4−0.15 (19)
C12—O3—C13—C14171.98 (10)O1—C3—C4—C5−179.64 (13)
C8—N1—C6—C1−2.16 (14)C2—C3—C4—C50.0 (2)
C8—N1—C6—C5177.77 (13)C3—C4—C5—C60.3 (2)
C6—N1—C8—C92.03 (14)C4—C5—C6—N1179.64 (13)
C6—N1—C8—C10−176.93 (11)C4—C5—C6—C1−0.4 (2)
C6—C1—C2—C3−0.02 (17)N1—C8—C9—C1−1.07 (13)
C9—C1—C2—C3178.39 (13)N1—C8—C9—C11−176.98 (11)
C2—C1—C6—N1−179.74 (11)C10—C8—C9—C1177.77 (12)
C2—C1—C6—C50.33 (18)C10—C8—C9—C111.9 (2)
C9—C1—C6—N11.47 (13)C1—C9—C11—C12117.42 (13)
C9—C1—C6—C5−178.47 (12)C8—C9—C11—C12−67.42 (15)
C2—C1—C9—C8−178.81 (13)C9—C11—C12—O2−69.51 (15)
C2—C1—C9—C11−2.9 (2)C9—C11—C12—O3110.07 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.914 (18)2.013 (18)2.8987 (14)162.7 (16)
C7—H7B···O2ii0.982.573.4271 (18)146
C13—H13A···O1iii0.992.553.4236 (16)148
C7—H7A···Cg1iv0.982.993.9550 (16)169
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2i 0.914 (18)2.013 (18)2.8987 (14)162.7 (16)
C7—H7B⋯O2ii 0.982.573.4271 (18)146
C13—H13A⋯O1iii 0.992.553.4236 (16)148
C7—H7ACg1iv 0.982.993.9550 (16)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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