Literature DB >> 24109331

1,4-Bis(2-diazo-acet-yl)piperazine.

Asmund Kaupang1, Carl Henrik Görbitz, Tore Bonge-Hansen.   

Abstract

The asymmetric unit of the title compound, C8H10N6O2, contains one-half mol-ecule, which is completed by a crystallographic center of symmetry. The piperazine ring adopts a chair conformation. In the crystal, weak C-H⋯O inter-actions link the mol-ecules into layers parallel to the bc plane. The crystal packing also exhibits short N⋯N contacts of 3.0467 (16) Å between the terminal diazo N atoms from neighbouring mol-ecules.

Entities:  

Year:  2013        PMID: 24109331      PMCID: PMC3793744          DOI: 10.1107/S1600536813018801

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures in the Cambridge Structural Database (Version 5.34 of November 2012; Allen, 2002 ▶), see: Kaupang (2010 ▶); Kaupang et al. (2010 ▶, 2011 ▶); Aliev et al. (1980 ▶); Fitzgerald & Jensen (1978 ▶); Hope & Black (1972 ▶). For normal bond lengths in organic compounds, see: Allen et al. (1987 ▶). For synthetic details, see: Kaupang & Bonge-Hansen (2013 ▶); Kaupang (2010 ▶); Toma et al. (2007 ▶). For the synthesis of other diazo­acetamides with a 1,4-di­aza six-membered ring, see: Kaupang (2010 ▶); Mickelson et al. (1996 ▶). For the synthesis of other diazo­acetamides, see: Ouihia et al. (1993 ▶). For the Chemical Abstracts Service, see: American Chemical Society (2008 ▶). For graph-set notation for hydrogen-bonding patterns, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C8H10N6O2 M = 222.22 Monoclinic, a = 4.0630 (7) Å b = 9.0941 (15) Å c = 13.230 (2) Å β = 94.453 (2)° V = 487.38 (14) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 105 K 1.4 × 0.2 × 0.2 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.859, T max = 0.977 4255 measured reflections 1190 independent reflections 1013 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.090 S = 1.04 1190 reflections 82 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT-Plus (Bruker, 2007 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813018801/cv5412sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018801/cv5412Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813018801/cv5412Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10N6O2F(000) = 232
Mr = 222.22Dx = 1.514 Mg m3
Monoclinic, P21/cMelting point: 382 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 4.0630 (7) ÅCell parameters from 1727 reflections
b = 9.0941 (15) Åθ = 2.7–28.7°
c = 13.230 (2) ŵ = 0.12 mm1
β = 94.453 (2)°T = 105 K
V = 487.38 (14) Å3Needle, yellow
Z = 21.4 × 0.2 × 0.2 mm
Bruker APEXII CCD diffractometer1190 independent reflections
Radiation source: fine-focus sealed tube1013 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
Detector resolution: 8.3 pixels mm-1θmax = 28.7°, θmin = 2.7°
Sets of exposures each taken over 0.5° ω rotation scansh = −5→5
Absorption correction: multi-scan (SADABS; Bruker, 2007)k = −11→11
Tmin = 0.859, Tmax = 0.977l = −17→17
4255 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0478P)2 + 0.1317P] where P = (Fo2 + 2Fc2)/3
1190 reflections(Δ/σ)max < 0.001
82 parametersΔρmax = 0.30 e Å3
3 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1936 (3)0.09488 (12)0.31650 (8)0.0164 (2)
C20.2433 (3)−0.01250 (13)0.23807 (8)0.0206 (3)
H210.165 (3)−0.1064 (14)0.2306 (11)0.025*
C3−0.0658 (3)−0.10152 (12)0.41721 (8)0.0168 (2)
H310.016 (3)−0.1708 (14)0.3686 (10)0.020*
H32−0.308 (3)−0.1005 (15)0.4067 (10)0.020*
C4−0.0370 (3)0.15403 (11)0.47597 (8)0.0169 (2)
H41−0.27910.16880.46850.020*
H420.07010.24950.46380.020*
N10.0575 (2)0.04673 (10)0.40139 (7)0.0165 (2)
N20.4038 (2)0.03769 (10)0.16317 (7)0.0208 (2)
N30.5432 (3)0.08327 (13)0.10006 (8)0.0295 (3)
O10.2787 (2)0.22436 (9)0.30680 (6)0.0208 (2)
U11U22U33U12U13U23
C10.0158 (5)0.0172 (5)0.0158 (5)0.0018 (4)−0.0009 (4)0.0016 (4)
C20.0285 (6)0.0176 (5)0.0162 (5)−0.0020 (4)0.0047 (4)0.0010 (4)
C30.0204 (5)0.0141 (5)0.0162 (5)−0.0021 (4)0.0026 (4)−0.0006 (4)
C40.0202 (5)0.0142 (5)0.0167 (5)0.0009 (4)0.0030 (4)−0.0012 (4)
N10.0221 (4)0.0131 (4)0.0145 (4)−0.0008 (3)0.0035 (3)−0.0006 (3)
N20.0264 (5)0.0189 (5)0.0171 (5)0.0024 (4)0.0021 (4)−0.0006 (4)
N30.0395 (6)0.0282 (6)0.0222 (5)−0.0010 (5)0.0110 (5)0.0007 (4)
O10.0282 (4)0.0154 (4)0.0193 (4)−0.0016 (3)0.0047 (3)0.0017 (3)
C1—O11.2367 (14)C3—H310.978 (12)
C1—N11.3621 (13)C3—H320.985 (12)
C1—C21.4504 (16)C4—N11.4602 (13)
C2—N21.3099 (14)C4—H410.9900
C2—H210.915 (12)C4—H420.9900
C3—N11.4589 (13)N2—N31.1239 (14)
C3—C4i1.5193 (15)
O1—C1—N1121.76 (10)H31—C3—H32107.6 (11)
O1—C1—C2120.75 (10)N1—C4—C3i110.54 (9)
N1—C1—C2117.48 (10)N1—C4—H41109.5
N2—C2—C1114.31 (10)C3i—C4—H41109.5
N2—C2—H21115.7 (9)N1—C4—H42109.5
C1—C2—H21129.7 (9)C3i—C4—H42109.5
N1—C3—C4i110.57 (9)H41—C4—H42108.1
N1—C3—H31111.3 (8)C1—N1—C3125.53 (9)
C4i—C3—H31109.1 (8)C1—N1—C4119.16 (9)
N1—C3—H32108.8 (8)C3—N1—C4114.17 (8)
C4i—C3—H32109.5 (8)N3—N2—C2178.58 (12)
O1—C1—C2—N24.86 (16)C2—C1—N1—C4−171.95 (9)
N1—C1—C2—N2−173.69 (9)C4i—C3—N1—C1137.76 (10)
O1—C1—N1—C3176.58 (10)C4i—C3—N1—C4−54.61 (12)
C2—C1—N1—C3−4.88 (15)C3i—C4—N1—C1−136.92 (9)
O1—C1—N1—C49.51 (15)C3i—C4—N1—C354.59 (12)
D—H···AD—HH···AD···AD—H···A
C2—H21···O1ii0.92 (1)2.39 (1)3.2219 (15)151 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H21⋯O1i 0.92 (1)2.39 (1)3.2219 (15)151 (1)

Symmetry code: (i) .

  7 in total

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Authors:  Frank H Allen
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5.  tert-Butyl 4-(2-diazo-acet-yl)piperazine-1-carboxyl-ate.

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6.  N,N'-ditosylhydrazine: a convenient reagent for facile synthesis of diazoacetates.

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7.  2-Diazo-1-(1,1-dioxothio-morpholin-4-yl)ethanone.

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