Literature DB >> 24109315

(Z)-Ethyl 2-cyano-3-(1H-imidazol-2-yl)acrylate.

Rajesh G Kalkhambkar1, Mahesh Kumar, D Gayathri, Jeongsu Oh, Yeon Tae Jeong.   

Abstract

The crystal structure of the title compound, C9H9N3O2, features N-H⋯N and C-H⋯O inter-actions. The N-H⋯N inter-action generates a chain running along the a axis and the C-H⋯O inter-action generates a chain along the c axis. An intra-molecular C-H⋯O inter-action is also observed.

Entities:  

Year:  2013        PMID: 24109315      PMCID: PMC3793728          DOI: 10.1107/S1600536813018278

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background references and the biological importance of related compounds, see: Bigi et al. (1999 ▶); Yu et al. (2000 ▶). For the synthesis, see: Knoevenagel (1898 ▶); Yadav et al. (2004 ▶).

Experimental

Crystal data

C9H9N3O2 M = 191.19 Orthorhombic, a = 10.0768 (7) Å b = 12.0387 (8) Å c = 7.7047 (6) Å V = 934.67 (12) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.4 × 0.23 × 0.2 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.980, T max = 0.984 7118 measured reflections 1436 independent reflections 1189 reflections with ( > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.145 S = 0.83 1436 reflections 128 parameters 1 restraint H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813018278/fj2635sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018278/fj2635Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813018278/fj2635Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N3O2F(000) = 400
Mr = 191.19Dx = 1.359 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acθ = 2.6–25.0°
a = 10.0768 (7) ŵ = 0.10 mm1
b = 12.0387 (8) ÅT = 293 K
c = 7.7047 (6) ÅNeedle, pale yellow
V = 934.67 (12) Å30.4 × 0.23 × 0.2 mm
Z = 4
Bruker SMART CCD area-detector diffractometer1436 independent reflections
Radiation source: fine-focus sealed tube1189 reflections with ( > 2σ(I)
Graphite monochromatorRint = 0.033
phi and ω scansθmax = 30.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −13→14
Tmin = 0.980, Tmax = 0.984k = −16→12
7118 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 0.83w = 1/[σ2(Fo2) + (0.1215P)2 + 0.160P] where P = (Fo2 + 2Fc2)/3
1436 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.33 e Å3
1 restraintΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1765 (3)−0.1284 (2)−0.3293 (4)0.0457 (6)
H10.1447−0.1956−0.37190.055*
C20.3054 (2)−0.0942 (2)−0.3241 (4)0.0447 (6)
H20.3770−0.1355−0.36470.054*
C30.1905 (2)0.03689 (18)−0.2134 (3)0.0364 (5)
C40.1407 (2)0.13759 (19)−0.1392 (4)0.0394 (5)
H40.04870.1416−0.13080.047*
C50.20598 (19)0.22724 (19)−0.0798 (4)0.0366 (4)
C60.1238 (2)0.32086 (19)−0.0127 (4)0.0416 (5)
C70.1271 (3)0.4938 (2)0.1330 (5)0.0623 (9)
H7A0.06240.52200.05090.075*
H7B0.08060.47010.23680.075*
C80.2242 (4)0.5808 (3)0.1760 (6)0.0696 (10)
H8A0.29170.55030.24990.104*
H8B0.18020.64060.23500.104*
H8C0.26410.60820.07130.104*
C90.3471 (2)0.23680 (19)−0.0740 (4)0.0421 (5)
N10.10482 (18)−0.04511 (16)−0.2601 (3)0.0420 (5)
H1A0.0200−0.0440−0.24770.050*
N20.31525 (19)0.00888 (17)−0.2512 (3)0.0396 (5)
N30.4589 (2)0.2480 (2)−0.0668 (5)0.0642 (8)
O10.00530 (18)0.32337 (16)−0.0221 (4)0.0626 (7)
O20.19908 (17)0.40053 (15)0.0574 (3)0.0515 (5)
U11U22U33U12U13U23
C10.0384 (11)0.0307 (12)0.0680 (15)0.0007 (9)−0.0019 (11)−0.0053 (12)
C20.0371 (11)0.0332 (12)0.0637 (15)0.0045 (9)0.0035 (10)−0.0040 (12)
C30.0309 (9)0.0250 (10)0.0533 (13)−0.0030 (8)0.0008 (8)0.0027 (9)
C40.0323 (9)0.0308 (11)0.0551 (12)−0.0001 (8)0.0024 (10)0.0029 (9)
C50.0348 (9)0.0251 (9)0.0500 (12)0.0025 (7)−0.0003 (9)0.0015 (9)
C60.0371 (10)0.0286 (11)0.0591 (14)−0.0003 (8)0.0065 (10)0.0011 (10)
C70.0554 (16)0.0366 (14)0.095 (2)0.0014 (11)0.0195 (16)−0.0130 (15)
C80.086 (3)0.0436 (15)0.079 (2)−0.0112 (15)0.017 (2)−0.0204 (16)
C90.0397 (11)0.0264 (10)0.0602 (14)0.0028 (8)−0.0018 (11)−0.0017 (10)
N10.0291 (8)0.0292 (9)0.0677 (13)−0.0027 (7)0.0001 (9)−0.0027 (10)
N20.0323 (9)0.0297 (10)0.0566 (11)−0.0022 (7)0.0014 (9)0.0001 (8)
N30.0388 (10)0.0502 (14)0.103 (2)0.0028 (9)−0.0041 (14)−0.0151 (15)
O10.0395 (9)0.0418 (10)0.1065 (19)0.0051 (8)0.0059 (10)−0.0154 (11)
O20.0434 (9)0.0291 (8)0.0819 (15)−0.0001 (6)0.0067 (9)−0.0126 (9)
C1—N11.346 (3)C6—O11.197 (3)
C1—C21.363 (3)C6—O21.337 (3)
C1—H10.9300C7—C81.472 (5)
C2—N21.366 (3)C7—O21.458 (3)
C2—H20.9300C7—H7A0.9700
C3—N21.334 (3)C7—H7B0.9700
C3—N11.360 (3)C8—H8A0.9600
C3—C41.431 (3)C8—H8B0.9600
C4—C51.344 (3)C8—H8C0.9600
C4—H40.9300C9—N31.135 (3)
C5—C91.428 (3)N1—H1A0.8600
C5—C61.491 (3)
N1—C1—C2105.9 (2)C8—C7—O2107.9 (3)
N1—C1—H1127.0C8—C7—H7A110.1
C2—C1—H1127.0O2—C7—H7A110.1
N2—C2—C1110.8 (2)C8—C7—H7B110.1
N2—C2—H2124.6O2—C7—H7B110.1
C1—C2—H2124.6H7A—C7—H7B108.4
N2—C3—N1110.9 (2)C7—C8—H8A109.5
N2—C3—C4129.2 (2)C7—C8—H8B109.5
N1—C3—C4119.9 (2)H8A—C8—H8B109.5
C5—C4—C3130.1 (2)C7—C8—H8C109.5
C5—C4—H4114.9H8A—C8—H8C109.5
C3—C4—H4114.9H8B—C8—H8C109.5
C4—C5—C9124.3 (2)N3—C9—C5177.6 (3)
C4—C5—C6116.95 (19)C1—N1—C3107.74 (18)
C9—C5—C6118.8 (2)C1—N1—H1A126.1
O1—C6—O2124.9 (2)C3—N1—H1A126.1
O1—C6—C5123.5 (2)C3—N2—C2104.54 (19)
O2—C6—C5111.56 (19)C6—O2—C7115.6 (2)
N1—C1—C2—N20.6 (4)C2—C1—N1—C3−0.5 (3)
N2—C3—C4—C5−4.1 (5)N2—C3—N1—C10.2 (3)
N1—C3—C4—C5177.9 (3)C4—C3—N1—C1178.6 (3)
C3—C4—C5—C9−2.6 (5)N1—C3—N2—C20.1 (3)
C3—C4—C5—C6178.8 (3)C4—C3—N2—C2−178.1 (3)
C4—C5—C6—O1−6.1 (5)C1—C2—N2—C3−0.4 (3)
C9—C5—C6—O1175.1 (3)O1—C6—O2—C72.7 (5)
C4—C5—C6—O2174.2 (3)C5—C6—O2—C7−177.6 (3)
C9—C5—C6—O2−4.5 (4)C8—C7—O2—C6−170.5 (3)
D—H···AD—HH···AD···AD—H···A
C4—H4···O10.932.382.771 (3)105
N1—H1A···N2i0.862.112.951 (3)167
C1—H1···O1ii0.932.453.328 (4)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯O10.932.382.771 (3)105
N1—H1A⋯N2i 0.862.112.951 (3)167
C1—H1⋯O1ii 0.932.453.328 (4)158

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Montmorillonite KSF as an Inorganic, Water Stable, and Reusable Catalyst for the Knoevenagel Synthesis of Coumarin-3-carboxylic Acids.

Authors:  Franca Bigi; Luca Chesini; Raimondo Maggi; Giovanni Sartori
Journal:  J Org Chem       Date:  1999-02-05       Impact factor: 4.354

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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