| Literature DB >> 24109315 |
Rajesh G Kalkhambkar1, Mahesh Kumar, D Gayathri, Jeongsu Oh, Yeon Tae Jeong.
Abstract
The crystal structure of the title compound, C9H9N3O2, features N-H⋯N and C-H⋯O inter-actions. The N-H⋯N inter-action generates a chain running along the a axis and the C-H⋯O inter-action generates a chain along the c axis. An intra-molecular C-H⋯O inter-action is also observed.Entities:
Year: 2013 PMID: 24109315 PMCID: PMC3793728 DOI: 10.1107/S1600536813018278
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H9N3O2 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2ac | θ = 2.6–25.0° |
| µ = 0.10 mm−1 | |
| Needle, pale yellow | |
| 0.4 × 0.23 × 0.2 mm | |
| Bruker SMART CCD area-detector diffractometer | 1436 independent reflections |
| Radiation source: fine-focus sealed tube | 1189 reflections with ( > 2σ( |
| Graphite monochromator | |
| phi and ω scans | θmax = 30.0°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 7118 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1436 reflections | (Δ/σ)max < 0.001 |
| 128 parameters | Δρmax = 0.33 e Å−3 |
| 1 restraint | Δρmin = −0.22 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.1765 (3) | −0.1284 (2) | −0.3293 (4) | 0.0457 (6) | |
| H1 | 0.1447 | −0.1956 | −0.3719 | 0.055* | |
| C2 | 0.3054 (2) | −0.0942 (2) | −0.3241 (4) | 0.0447 (6) | |
| H2 | 0.3770 | −0.1355 | −0.3647 | 0.054* | |
| C3 | 0.1905 (2) | 0.03689 (18) | −0.2134 (3) | 0.0364 (5) | |
| C4 | 0.1407 (2) | 0.13759 (19) | −0.1392 (4) | 0.0394 (5) | |
| H4 | 0.0487 | 0.1416 | −0.1308 | 0.047* | |
| C5 | 0.20598 (19) | 0.22724 (19) | −0.0798 (4) | 0.0366 (4) | |
| C6 | 0.1238 (2) | 0.32086 (19) | −0.0127 (4) | 0.0416 (5) | |
| C7 | 0.1271 (3) | 0.4938 (2) | 0.1330 (5) | 0.0623 (9) | |
| H7A | 0.0624 | 0.5220 | 0.0509 | 0.075* | |
| H7B | 0.0806 | 0.4701 | 0.2368 | 0.075* | |
| C8 | 0.2242 (4) | 0.5808 (3) | 0.1760 (6) | 0.0696 (10) | |
| H8A | 0.2917 | 0.5503 | 0.2499 | 0.104* | |
| H8B | 0.1802 | 0.6406 | 0.2350 | 0.104* | |
| H8C | 0.2641 | 0.6082 | 0.0713 | 0.104* | |
| C9 | 0.3471 (2) | 0.23680 (19) | −0.0740 (4) | 0.0421 (5) | |
| N1 | 0.10482 (18) | −0.04511 (16) | −0.2601 (3) | 0.0420 (5) | |
| H1A | 0.0200 | −0.0440 | −0.2477 | 0.050* | |
| N2 | 0.31525 (19) | 0.00888 (17) | −0.2512 (3) | 0.0396 (5) | |
| N3 | 0.4589 (2) | 0.2480 (2) | −0.0668 (5) | 0.0642 (8) | |
| O1 | 0.00530 (18) | 0.32337 (16) | −0.0221 (4) | 0.0626 (7) | |
| O2 | 0.19908 (17) | 0.40053 (15) | 0.0574 (3) | 0.0515 (5) |
| C1 | 0.0384 (11) | 0.0307 (12) | 0.0680 (15) | 0.0007 (9) | −0.0019 (11) | −0.0053 (12) |
| C2 | 0.0371 (11) | 0.0332 (12) | 0.0637 (15) | 0.0045 (9) | 0.0035 (10) | −0.0040 (12) |
| C3 | 0.0309 (9) | 0.0250 (10) | 0.0533 (13) | −0.0030 (8) | 0.0008 (8) | 0.0027 (9) |
| C4 | 0.0323 (9) | 0.0308 (11) | 0.0551 (12) | −0.0001 (8) | 0.0024 (10) | 0.0029 (9) |
| C5 | 0.0348 (9) | 0.0251 (9) | 0.0500 (12) | 0.0025 (7) | −0.0003 (9) | 0.0015 (9) |
| C6 | 0.0371 (10) | 0.0286 (11) | 0.0591 (14) | −0.0003 (8) | 0.0065 (10) | 0.0011 (10) |
| C7 | 0.0554 (16) | 0.0366 (14) | 0.095 (2) | 0.0014 (11) | 0.0195 (16) | −0.0130 (15) |
| C8 | 0.086 (3) | 0.0436 (15) | 0.079 (2) | −0.0112 (15) | 0.017 (2) | −0.0204 (16) |
| C9 | 0.0397 (11) | 0.0264 (10) | 0.0602 (14) | 0.0028 (8) | −0.0018 (11) | −0.0017 (10) |
| N1 | 0.0291 (8) | 0.0292 (9) | 0.0677 (13) | −0.0027 (7) | 0.0001 (9) | −0.0027 (10) |
| N2 | 0.0323 (9) | 0.0297 (10) | 0.0566 (11) | −0.0022 (7) | 0.0014 (9) | 0.0001 (8) |
| N3 | 0.0388 (10) | 0.0502 (14) | 0.103 (2) | 0.0028 (9) | −0.0041 (14) | −0.0151 (15) |
| O1 | 0.0395 (9) | 0.0418 (10) | 0.1065 (19) | 0.0051 (8) | 0.0059 (10) | −0.0154 (11) |
| O2 | 0.0434 (9) | 0.0291 (8) | 0.0819 (15) | −0.0001 (6) | 0.0067 (9) | −0.0126 (9) |
| C1—N1 | 1.346 (3) | C6—O1 | 1.197 (3) |
| C1—C2 | 1.363 (3) | C6—O2 | 1.337 (3) |
| C1—H1 | 0.9300 | C7—C8 | 1.472 (5) |
| C2—N2 | 1.366 (3) | C7—O2 | 1.458 (3) |
| C2—H2 | 0.9300 | C7—H7A | 0.9700 |
| C3—N2 | 1.334 (3) | C7—H7B | 0.9700 |
| C3—N1 | 1.360 (3) | C8—H8A | 0.9600 |
| C3—C4 | 1.431 (3) | C8—H8B | 0.9600 |
| C4—C5 | 1.344 (3) | C8—H8C | 0.9600 |
| C4—H4 | 0.9300 | C9—N3 | 1.135 (3) |
| C5—C9 | 1.428 (3) | N1—H1A | 0.8600 |
| C5—C6 | 1.491 (3) | ||
| N1—C1—C2 | 105.9 (2) | C8—C7—O2 | 107.9 (3) |
| N1—C1—H1 | 127.0 | C8—C7—H7A | 110.1 |
| C2—C1—H1 | 127.0 | O2—C7—H7A | 110.1 |
| N2—C2—C1 | 110.8 (2) | C8—C7—H7B | 110.1 |
| N2—C2—H2 | 124.6 | O2—C7—H7B | 110.1 |
| C1—C2—H2 | 124.6 | H7A—C7—H7B | 108.4 |
| N2—C3—N1 | 110.9 (2) | C7—C8—H8A | 109.5 |
| N2—C3—C4 | 129.2 (2) | C7—C8—H8B | 109.5 |
| N1—C3—C4 | 119.9 (2) | H8A—C8—H8B | 109.5 |
| C5—C4—C3 | 130.1 (2) | C7—C8—H8C | 109.5 |
| C5—C4—H4 | 114.9 | H8A—C8—H8C | 109.5 |
| C3—C4—H4 | 114.9 | H8B—C8—H8C | 109.5 |
| C4—C5—C9 | 124.3 (2) | N3—C9—C5 | 177.6 (3) |
| C4—C5—C6 | 116.95 (19) | C1—N1—C3 | 107.74 (18) |
| C9—C5—C6 | 118.8 (2) | C1—N1—H1A | 126.1 |
| O1—C6—O2 | 124.9 (2) | C3—N1—H1A | 126.1 |
| O1—C6—C5 | 123.5 (2) | C3—N2—C2 | 104.54 (19) |
| O2—C6—C5 | 111.56 (19) | C6—O2—C7 | 115.6 (2) |
| N1—C1—C2—N2 | 0.6 (4) | C2—C1—N1—C3 | −0.5 (3) |
| N2—C3—C4—C5 | −4.1 (5) | N2—C3—N1—C1 | 0.2 (3) |
| N1—C3—C4—C5 | 177.9 (3) | C4—C3—N1—C1 | 178.6 (3) |
| C3—C4—C5—C9 | −2.6 (5) | N1—C3—N2—C2 | 0.1 (3) |
| C3—C4—C5—C6 | 178.8 (3) | C4—C3—N2—C2 | −178.1 (3) |
| C4—C5—C6—O1 | −6.1 (5) | C1—C2—N2—C3 | −0.4 (3) |
| C9—C5—C6—O1 | 175.1 (3) | O1—C6—O2—C7 | 2.7 (5) |
| C4—C5—C6—O2 | 174.2 (3) | C5—C6—O2—C7 | −177.6 (3) |
| C9—C5—C6—O2 | −4.5 (4) | C8—C7—O2—C6 | −170.5 (3) |
| H··· | ||||
| C4—H4···O1 | 0.93 | 2.38 | 2.771 (3) | 105 |
| N1—H1 | 0.86 | 2.11 | 2.951 (3) | 167 |
| C1—H1···O1ii | 0.93 | 2.45 | 3.328 (4) | 158 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C4—H4⋯O1 | 0.93 | 2.38 | 2.771 (3) | 105 |
| N1—H1 | 0.86 | 2.11 | 2.951 (3) | 167 |
| C1—H1⋯O1ii | 0.93 | 2.45 | 3.328 (4) | 158 |
Symmetry codes: (i) ; (ii) .