Literature DB >> 24109314

2,2'-{[2-(2-Chloro-phen-yl)-4-methyl-imidazolidine-1,3-di-yl]bis-(methyl-ene)}diphenol.

Augusto Rivera1, Lorena Cárdenas, Jaime Ríos-Motta, Monika Kučeraková, Michal Dušek.   

Abstract

In the title compound, C24H25ClN2O2, the 2-hy-droxy-benzyl substituents and the 2-chloro-phenyl group occupy the sterically preferred equatorial positions, whereas the methyl group occupies the axial position. The imidazolidine ring adopts an envelope conformation with one of the N atoms adjacent to the methylene group as the flap. The chloro-phenyl substit-uent approaches a nearly perpendicular orientation relative to the mean plane of the imidazolidine ring, making a dihedral angle of 73.44 (12)° and the Cl atom is almost coplanar with the C atom bearing the chloro-phenyl substituent [Cl-C-C-C torsion angle = 1.1 (3)°]. The hy-droxy-benzyl groups make dihedral angles of 71.23 (15) and 69.13 (19)° with the mean plane of the heterocyclic ring. The dihedral angle between the two hy-droxy-benzyl groups is 69.61 (12)°. The mol-ecular structure features two intra-molecular O-H⋯N hydrogen bonds with graph-set motif S(6) between the phenolic hydroxyl groups and N atoms.

Entities:  

Year:  2013        PMID: 24109314      PMCID: PMC3793727          DOI: 10.1107/S1600536813017923

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Rivera et al. (2012a ▶,b ▶). For the synthesis of the title compound, see: Rivera et al. (2013 ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond graph-set nomenclature, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C24H25ClN2O2 M = 408.9 Monoclinic, a = 7.0281 (2) Å b = 9.7903 (3) Å c = 30.3813 (6) Å β = 94.168 (2)° V = 2084.92 (10) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 120 K 0.24 × 0.15 × 0.08 mm

Data collection

Agilent Xcalibur (Atlas, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.392, T max = 1 25057 measured reflections 3732 independent reflections 3164 reflections with I > 3σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.081 S = 2.66 3732 reflections 268 parameters 1 restraint H-atom parameters constrained Δρmax = 1.29 e Å−3 Δρmin = −0.33 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis 2007 ▶); program(s) used to refine structure: JANA2006 (Petříček et al. 2006 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813017923/bx2443sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813017923/bx2443Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813017923/bx2443Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H25ClN2O2F(000) = 864
Mr = 408.9Dx = 1.302 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ycbCell parameters from 10626 reflections
a = 7.0281 (2) Åθ = 2.9–67.0°
b = 9.7903 (3) ŵ = 0.21 mm1
c = 30.3813 (6) ÅT = 120 K
β = 94.168 (2)°Polygon shape, white
V = 2084.92 (10) Å30.24 × 0.15 × 0.08 mm
Z = 4
Agilent Xcalibur (Atlas, Gemini ultra) diffractometer3732 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source3164 reflections with I > 3σ(I)
Mirror monochromatorRint = 0.034
Detector resolution: 10.3784 pixels mm-1θmax = 25.1°, θmin = 1.3°
ω scansh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −11→11
Tmin = 0.392, Tmax = 1l = −36→31
25057 measured reflections
Refinement on F94 constraints
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.081Weighting scheme based on measured s.u.'s w = 1/(σ2(F) + 0.0004F2)
S = 2.66(Δ/σ)max = 0.024
3732 reflectionsΔρmax = 1.29 e Å3
268 parametersΔρmin = −0.33 e Å3
1 restraint
Experimental. (CrysAlis PRO; Agilent, 2010) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
Cl10.47526 (9)0.37100 (7)0.066197 (19)0.0426 (2)
O11.1631 (3)−0.0315 (2)0.09734 (7)0.0521 (7)
N10.6652 (3)0.10467 (19)0.17016 (6)0.0276 (5)
N20.7887 (3)0.02087 (19)0.10763 (6)0.0281 (5)
O20.8058 (3)0.2490 (2)0.24193 (6)0.0533 (7)
C10.9092 (3)−0.1023 (2)0.04481 (7)0.0313 (7)
C20.7791 (3)0.2711 (2)0.11711 (7)0.0303 (6)
C30.9648 (4)0.2880 (2)0.13809 (7)0.0358 (7)
C40.8047 (4)0.5012 (3)0.08815 (8)0.0408 (8)
C61.0958 (4)−0.1154 (3)0.06367 (8)0.0373 (7)
C50.6590 (4)0.1942 (3)0.26237 (8)0.0398 (8)
C70.9840 (4)0.5144 (3)0.10888 (8)0.0439 (8)
C81.1541 (4)−0.3039 (3)0.01561 (7)0.0405 (8)
C90.7795 (3)0.0089 (2)0.05926 (7)0.0327 (7)
C100.5015 (4)0.1449 (3)0.23719 (8)0.0374 (7)
C111.2177 (4)−0.2147 (3)0.04910 (8)0.0420 (8)
C120.7072 (4)−0.0978 (2)0.12959 (7)0.0361 (7)
C130.3618 (4)0.0796 (3)0.25849 (9)0.0468 (9)
C140.5252 (4)0.1215 (3)0.32865 (8)0.0440 (9)
C150.8499 (4)−0.1925 (3)0.01111 (7)0.0375 (7)
C160.9707 (4)−0.2924 (3)−0.00355 (8)0.0415 (8)
C170.6776 (3)0.1362 (2)0.12301 (7)0.0286 (6)
C180.7034 (4)0.3801 (2)0.09253 (7)0.0334 (7)
C190.4922 (4)0.1602 (3)0.18752 (8)0.0410 (8)
C200.6855 (4)−0.0468 (2)0.17574 (8)0.0383 (8)
C210.6697 (4)0.1850 (3)0.30818 (8)0.0436 (8)
C220.3725 (5)0.0669 (3)0.30433 (9)0.0513 (10)
C231.0644 (4)0.4083 (3)0.13432 (8)0.0407 (8)
C240.8613 (5)−0.0821 (3)0.20628 (9)0.0509 (9)
H1c31.0219740.2143030.1552060.043*
H1c40.7494720.5748920.0707450.049*
H1c71.0542010.5975490.1057940.0527*
H1c81.237584−0.3734250.0058220.0486*
H1c90.8150690.0942960.0467060.0392*
H2c90.650655−0.0103540.048320.0392*
H1c111.345868−0.221670.0621550.0504*
H1c120.796755−0.1719140.1305350.0433*
H2c120.583691−0.1184230.1155810.0433*
H1c130.2542340.0416370.2414310.0562*
H1c140.5316980.115630.3602650.0528*
H1c150.722369−0.185392−0.0023350.045*
H1c160.926718−0.353119−0.0269180.0499*
H1c170.5555380.1462350.1069730.0344*
H1c190.3827650.1121640.1746490.0492*
H2c190.4800640.2550550.1798760.0492*
H1c200.579161−0.0873020.1889780.0459*
H1c210.7771320.2225410.3253960.0523*
H1c220.273750.0204250.318630.0616*
H1c231.1888410.4187160.14920.0489*
H1c240.871865−0.1795340.2091130.0611*
H2c240.973392−0.0466570.1940760.0611*
H3c240.848806−0.0423680.2348110.0611*
H11.042 (5)0.005 (4)0.1092 (11)0.0625*
H20.785 (5)0.212 (4)0.2108 (10)0.0639*
U11U22U33U12U13U23
Cl10.0468 (4)0.0437 (4)0.0364 (3)0.0097 (3)−0.0034 (2)0.0023 (2)
O10.0435 (11)0.0589 (13)0.0526 (11)−0.0001 (9)−0.0056 (8)−0.0247 (9)
N10.0304 (9)0.0255 (10)0.0272 (9)−0.0014 (7)0.0043 (7)0.0034 (7)
N20.0372 (10)0.0226 (9)0.0243 (9)−0.0034 (7)0.0009 (7)−0.0007 (7)
O20.0551 (12)0.0583 (13)0.0464 (11)−0.0161 (10)0.0039 (8)−0.0061 (9)
C10.0434 (13)0.0267 (12)0.0243 (10)−0.0071 (9)0.0052 (8)0.0018 (8)
C20.0372 (12)0.0283 (12)0.0259 (10)−0.0002 (9)0.0068 (8)−0.0010 (8)
C30.0466 (13)0.0259 (12)0.0361 (12)−0.0080 (10)0.0104 (10)−0.0046 (9)
C40.0672 (17)0.0270 (12)0.0306 (12)−0.0012 (11)0.0196 (11)−0.0022 (9)
C60.0465 (14)0.0359 (13)0.0295 (11)−0.0031 (10)0.0026 (9)−0.0035 (9)
C50.0427 (13)0.0392 (14)0.0384 (12)0.0076 (11)0.0093 (10)0.0087 (10)
C70.0622 (17)0.0301 (13)0.0420 (13)−0.0130 (12)0.0209 (11)−0.0062 (10)
C80.0570 (16)0.0358 (14)0.0304 (11)0.0025 (11)0.0143 (10)0.0024 (9)
C90.0434 (13)0.0281 (12)0.0258 (11)−0.0033 (9)−0.0021 (9)0.0003 (8)
C100.0397 (13)0.0395 (14)0.0337 (12)0.0115 (10)0.0073 (9)0.0046 (9)
C110.0479 (15)0.0433 (15)0.0349 (12)0.0027 (12)0.0047 (10)0.0007 (10)
C120.0491 (14)0.0249 (12)0.0344 (12)−0.0045 (10)0.0034 (10)0.0047 (9)
C130.0526 (16)0.0492 (16)0.0402 (14)0.0001 (13)0.0151 (11)−0.0013 (11)
C140.0668 (18)0.0326 (13)0.0342 (13)0.0154 (12)0.0142 (11)0.0040 (9)
C150.0483 (14)0.0361 (13)0.0282 (11)−0.0084 (11)0.0036 (9)−0.0035 (9)
C160.0624 (17)0.0344 (14)0.0291 (11)−0.0084 (12)0.0113 (10)−0.0072 (9)
C170.0296 (11)0.0293 (12)0.0266 (10)−0.0010 (9)−0.0002 (8)0.0019 (8)
C180.0453 (13)0.0308 (12)0.0250 (10)0.0022 (10)0.0092 (9)−0.0022 (8)
C190.0355 (12)0.0549 (16)0.0329 (12)0.0113 (11)0.0047 (9)0.0066 (10)
C200.0508 (14)0.0277 (12)0.0370 (12)−0.0068 (10)0.0080 (10)0.0035 (9)
C210.0529 (15)0.0400 (14)0.0379 (13)0.0119 (12)0.0042 (11)0.0043 (11)
C220.0700 (19)0.0444 (16)0.0423 (14)−0.0010 (14)0.0235 (13)0.0041 (12)
C230.0421 (13)0.0366 (14)0.0449 (13)−0.0096 (11)0.0121 (10)−0.0088 (10)
C240.0688 (19)0.0407 (16)0.0413 (14)0.0111 (13)−0.0097 (12)−0.0010 (11)
O1—C61.369 (3)C9—H1c90.96
N1—C171.474 (3)C9—H2c90.96
N1—C191.465 (3)C10—C131.373 (4)
N1—C201.498 (3)C10—C191.513 (3)
N2—C91.471 (3)C11—H1c110.96
N2—C121.476 (3)C12—C201.507 (3)
N2—C171.468 (3)C12—H1c120.96
O2—C51.353 (3)C12—H2c120.96
C1—C61.398 (3)C13—C221.395 (4)
C1—C91.506 (3)C13—H1c130.96
C1—C151.392 (3)C14—C211.377 (4)
C2—C31.420 (3)C14—C221.367 (4)
C2—C171.518 (3)C14—H1c140.96
C2—C181.386 (3)C15—C161.389 (4)
C3—C231.380 (4)C15—H1c150.96
C3—H1c30.96C16—H1c160.96
C4—C71.373 (4)C17—H1c170.96
C4—C181.394 (4)C19—H1c190.96
C4—H1c40.96C19—H2c190.96
C6—C111.389 (4)C20—C241.529 (4)
C5—C101.386 (3)C20—H1c200.96
C5—C211.391 (3)C21—H1c210.96
C7—C231.390 (4)C22—H1c220.96
C7—H1c70.96C23—H1c230.96
C8—C111.390 (4)C24—H1c240.96
C8—C161.380 (4)C24—H2c240.96
C8—H1c80.96C24—H3c240.96
C17—N1—C19112.41 (17)H1c12—C12—H2c12115.07
C17—N1—C20107.79 (17)C10—C13—C22121.6 (3)
C19—N1—C20113.64 (19)C10—C13—H1c13119.2
C9—N2—C12113.49 (17)C22—C13—H1c13119.2
C9—N2—C17113.18 (17)C21—C14—C22120.5 (2)
C12—N2—C17103.20 (17)C21—C14—H1c14119.73
C6—C1—C9121.1 (2)C22—C14—H1c14119.73
C6—C1—C15117.7 (2)C1—C15—C16121.6 (2)
C9—C1—C15121.1 (2)C1—C15—H1c15119.18
C3—C2—C17118.20 (19)C16—C15—H1c15119.18
C3—C2—C18117.2 (2)C8—C16—C15119.8 (2)
C17—C2—C18124.6 (2)C8—C16—H1c16120.12
C2—C3—C23121.2 (2)C15—C16—H1c16120.12
C2—C3—H1c3119.42N1—C17—N2102.62 (16)
C23—C3—H1c3119.42N1—C17—C2110.98 (17)
C7—C4—C18119.6 (2)N1—C17—H1c17113.65
C7—C4—H1c4120.18N2—C17—C2111.48 (18)
C18—C4—H1c4120.18N2—C17—H1c17113.17
O1—C6—C1120.9 (2)C2—C17—H1c17105.14
O1—C6—C11118.1 (2)C2—C18—C4121.8 (2)
C1—C6—C11121.0 (2)N1—C19—C10110.23 (19)
O2—C5—C10119.3 (2)N1—C19—H1c19109.47
O2—C5—C21119.8 (2)N1—C19—H2c19109.47
C10—C5—C21120.9 (2)C10—C19—H1c19109.47
C4—C7—C23120.5 (2)C10—C19—H2c19109.47
C4—C7—H1c7119.77H1c19—C19—H2c19108.7
C23—C7—H1c7119.76N1—C20—C12103.76 (18)
C11—C8—C16119.9 (2)N1—C20—C24111.0 (2)
C11—C8—H1c8120.06N1—C20—H1c20112.71
C16—C8—H1c8120.06C12—C20—C24111.0 (2)
N2—C9—C1111.43 (18)C12—C20—H1c20112.78
N2—C9—H1c9109.47C24—C20—H1c20105.75
N2—C9—H2c9109.47C5—C21—C14119.5 (2)
C1—C9—H1c9109.47C5—C21—H1c21120.23
C1—C9—H2c9109.47C14—C21—H1c21120.23
H1c9—C9—H2c9107.44C13—C22—C14119.2 (3)
C5—C10—C13118.1 (2)C13—C22—H1c22120.39
C5—C10—C19119.4 (2)C14—C22—H1c22120.39
C13—C10—C19122.4 (2)C3—C23—C7119.7 (2)
C6—C11—C8120.0 (2)C3—C23—H1c23120.14
C6—C11—H1c11120C7—C23—H1c23120.14
C8—C11—H1c11120C20—C24—H1c24109.47
N2—C12—C20103.23 (18)C20—C24—H2c24109.47
N2—C12—H1c12109.47C20—C24—H3c24109.47
N2—C12—H2c12109.47H1c24—C24—H2c24109.47
C20—C12—H1c12109.47H1c24—C24—H3c24109.47
C20—C12—H2c12109.47H2c24—C24—H3c24109.47
D—H···AD—HH···AD···AD—H···A
O1—H1···N21.01 (3)1.79 (3)2.721 (3)152 (3)
O2—H2···N11.01 (3)1.79 (3)2.723 (3)152 (3)
O1—H1···C91.01 (3)2.31 (3)2.883 (3)115 (2)
O2—H2···C191.01 (3)2.19 (4)2.796 (3)117 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N21.01 (3)1.79 (3)2.721 (3)152 (3)
O2—H2⋯N11.01 (3)1.79 (3)2.723 (3)152 (3)
  1 in total

1.  1,3-Dibenzyl-2-(2-chloro-phen-yl)-4-methyl-imidazolidine.

Authors:  Augusto Rivera; Lorena Cardenas; Jaime Ríos-Motta; Václav Eigner; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-24
  1 in total
  1 in total

1.  2,2'-{[2-(2-Hy-droxy-phen-yl)-4-methyl-imidazolidine-1,3-di-yl]bis-(methyl-ene)}diphenol.

Authors:  Augusto Rivera; Lorena Cárdenas; Jaime Ríos-Motta; Monika Kučeráková; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-20
  1 in total

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